Wall clock time and date at job start Tue Mar 31 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 C 1.53002 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.55723 * 29.31973 * 4 3 2 6 6 C 1.52995 * 117.50537 * 243.62529 * 4 3 2 7 7 C 1.53000 * 60.00111 * 252.51072 * 6 4 3 8 8 H 1.09006 * 117.49903 * 107.51185 * 7 6 4 9 9 C 1.50699 * 117.49724 * 252.50796 * 7 6 4 10 10 O 1.21275 * 119.99750 * 68.61266 * 9 7 6 11 11 N 1.34773 * 119.99710 * 248.60323 * 9 7 6 12 12 C 1.46929 * 120.62690 * 179.97438 * 11 9 7 13 13 C 1.53197 * 108.77709 * 233.58950 * 12 11 9 14 14 C 1.53037 * 109.31428 * 305.36793 * 13 12 11 15 15 N 1.46493 * 109.46330 * 181.38278 * 14 13 12 16 16 C 1.36936 * 120.00314 * 154.99825 * 15 14 13 17 17 H 1.08001 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 179.72505 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.53044 * 109.53905 * 61.36187 * 14 13 12 25 25 C 1.46921 * 120.63598 * 359.97438 * 11 9 7 26 26 H 1.09002 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46970 * 299.99622 * 1 2 3 28 28 H 1.08997 * 109.46932 * 59.99681 * 1 2 3 29 29 H 1.08998 * 109.47313 * 240.00663 * 2 1 3 30 30 H 1.08998 * 109.47157 * 119.99816 * 2 1 3 31 31 H 1.09004 * 109.47016 * 60.00406 * 3 2 1 32 32 H 1.08993 * 109.47547 * 300.00393 * 3 2 1 33 33 H 1.08999 * 117.50081 * 145.01755 * 6 4 3 34 34 H 1.09004 * 117.51498 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.58610 * 113.80592 * 12 11 9 36 36 H 1.08996 * 109.70804 * 353.45109 * 12 11 9 37 37 H 1.08998 * 109.49613 * 185.41517 * 13 12 11 38 38 H 1.09004 * 109.49583 * 65.31697 * 13 12 11 39 39 H 1.09000 * 109.46077 * 301.36183 * 14 13 12 40 40 H 0.97000 * 120.00040 * 334.99957 * 15 14 13 41 41 H 0.96999 * 119.99889 * 180.27497 * 19 18 16 42 42 H 1.09000 * 109.49340 * 58.58645 * 24 14 13 43 43 H 1.09002 * 109.49830 * 178.68353 * 24 14 13 44 44 H 1.08999 * 109.58823 * 246.19624 * 25 11 9 45 45 H 1.09002 * 109.58292 * 6.61578 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5852 -0.4806 6 6 4.2760 2.0457 1.2166 7 6 4.2765 2.7946 -0.1176 8 1 3.6515 3.6843 -0.1955 9 6 5.5696 2.8388 -0.8902 10 8 6.0123 1.8264 -1.3898 11 7 6.2338 4.0036 -1.0261 12 6 7.4959 4.0625 -1.7760 13 6 8.5677 4.7028 -0.8881 14 6 8.0679 6.0612 -0.3911 15 7 9.1035 6.6911 0.4315 16 6 9.1376 8.0535 0.5648 17 1 8.4006 8.6637 0.0637 18 6 10.1192 8.6504 1.3438 19 7 10.1552 9.9603 1.4675 20 14 11.3943 7.5952 2.2100 21 1 10.9000 7.2319 3.5624 22 1 11.6324 6.3595 1.4216 23 1 12.6639 8.3552 2.3345 24 6 6.8012 5.8658 0.4453 25 6 5.7097 5.2386 -0.4272 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 5.2110 1.5850 1.5355 34 1 3.6508 2.4429 2.0163 35 1 7.3592 4.6637 -2.6749 36 1 7.8057 3.0551 -2.0539 37 1 9.4827 4.8403 -1.4641 38 1 8.7682 4.0546 -0.0350 39 1 7.8438 6.7003 -1.2451 40 1 9.7652 6.1431 0.8819 41 1 10.8435 10.3777 2.0086 42 1 7.0184 5.2066 1.2858 43 1 6.4590 6.8311 0.8184 44 1 5.4271 5.9359 -1.2159 45 1 4.8396 5.0062 0.1868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996972526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:07 Heat of formation + Delta-G solvation = -16.361719 kcal Electronic energy + Delta-G solvation = -22050.494665 eV Core-core repulsion = 18875.262531 eV Total energy + Delta-G solvation = -3175.232134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35317 -38.15294 -36.89615 -34.62248 -34.13318 -32.07135 -30.95168 -29.82690 -27.80337 -25.52343 -23.91167 -22.93175 -22.29220 -21.81657 -20.81390 -20.14625 -18.73127 -17.62636 -17.25300 -16.00198 -15.46472 -15.17397 -14.88799 -14.69702 -14.30942 -14.06098 -13.71298 -13.57785 -13.34997 -13.01085 -12.88979 -12.55647 -12.41055 -12.21922 -12.08590 -11.86678 -11.58536 -11.31145 -11.11917 -11.06226 -11.03503 -10.91267 -10.57132 -10.42437 -10.26940 -10.15304 -9.90376 -9.69321 -9.62313 -8.95813 -8.54160 -7.31625 -5.80874 -3.16711 2.49909 2.99653 3.35093 3.38576 3.43246 3.67759 4.25628 4.53710 4.55903 4.58733 4.76812 4.84379 4.86982 5.01414 5.08631 5.09567 5.22347 5.25377 5.34243 5.43307 5.46369 5.50579 5.53416 5.57133 5.59184 5.62613 5.74589 5.77418 5.85241 5.92610 5.93623 5.97244 6.08075 6.14664 6.15741 6.27959 6.36837 6.53559 6.78646 6.91739 7.48601 7.94687 8.22647 8.38298 9.16448 9.89354 10.09203 11.37304 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032004 B = 0.003124 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.690071 B = 8959.950252 C = 9187.801949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.189 4.189 8 H 0.124 0.876 9 C 0.544 3.456 10 O -0.552 6.552 11 N -0.603 5.603 12 C 0.116 3.884 13 C -0.142 4.142 14 C 0.183 3.817 15 N -0.749 5.749 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.277 1.277 23 H -0.291 1.291 24 C -0.151 4.151 25 C 0.107 3.893 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.708 -17.151 -3.161 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.134 0.866 6 C -0.184 4.184 7 C -0.210 4.210 8 H 0.142 0.858 9 C 0.333 3.667 10 O -0.431 6.431 11 N -0.335 5.335 12 C -0.006 4.006 13 C -0.181 4.181 14 C 0.074 3.926 15 N -0.390 5.390 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.203 1.203 23 H -0.217 1.217 24 C -0.192 4.192 25 C -0.016 4.016 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.482 -17.392 -3.454 24.209 hybrid contribution 1.060 -0.321 0.797 1.364 sum -15.422 -17.713 -2.658 23.636 Atomic orbital electron populations 1.21784 0.95900 1.01595 1.01795 1.21500 0.95610 0.96544 1.02319 1.21244 0.91973 0.97317 1.02212 1.22444 0.94576 0.95533 1.01234 0.86567 1.23086 1.03062 1.01983 0.90299 1.22318 0.97920 0.98567 1.02232 0.85824 1.19634 0.84691 0.82735 0.79691 1.90650 1.68963 1.33795 1.49648 1.48087 1.23592 1.08490 1.53353 1.21587 0.82903 1.02173 0.93981 1.22243 0.98196 0.97829 0.99836 1.20141 0.88158 0.91344 0.92991 1.42802 1.32959 1.04677 1.58605 1.19062 1.11918 0.81177 1.25231 0.89171 1.24679 0.98874 0.95365 1.00213 1.69701 1.36343 1.07834 1.44213 0.86553 0.82078 0.79905 0.79999 1.21137 1.20333 1.21739 1.22624 0.96604 1.01054 0.98870 1.21882 0.97410 0.85162 0.97114 0.92791 0.92759 0.92750 0.91837 0.91818 0.91598 0.91426 0.88365 0.87805 0.91413 0.89366 0.90499 0.92007 0.92542 0.80646 0.93043 0.92274 0.90148 0.91364 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.85 5.89 -26.73 -0.16 -1.01 16 3 C -0.09 -0.68 5.50 -26.73 -0.15 -0.83 16 4 C -0.12 -1.16 5.25 -90.62 -0.48 -1.63 16 5 H 0.12 1.32 7.60 -51.93 -0.39 0.93 16 6 C -0.15 -1.41 9.88 -26.73 -0.26 -1.67 16 7 C -0.19 -2.04 4.69 -91.77 -0.43 -2.47 16 8 H 0.12 1.12 6.81 -51.93 -0.35 0.77 16 9 C 0.54 7.74 7.48 -10.99 -0.08 7.65 16 10 O -0.55 -9.55 15.67 5.56 0.09 -9.47 16 11 N -0.60 -8.27 2.97 -172.78 -0.51 -8.78 16 12 C 0.12 1.63 6.43 -3.71 -0.02 1.60 16 13 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 14 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 15 N -0.75 -17.17 4.92 -53.39 -0.26 -17.43 16 16 C -0.24 -6.68 10.41 -15.06 -0.16 -6.84 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 20 Si 0.88 21.94 27.74 -169.99 -4.72 17.22 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.50 6.51 56.52 0.37 -6.13 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 C -0.15 -2.39 5.66 -26.62 -0.15 -2.54 16 25 C 0.11 1.34 6.30 -3.72 -0.02 1.32 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.28 7.01 -51.93 -0.36 0.92 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.36 8.28 5.65 -40.82 -0.23 8.04 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.84 5.67 -51.93 -0.29 0.55 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -31.95 356.13 -9.21 -41.15 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.97 Total: 6.21 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.97 Total: -6.16 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.00 Total: -54.33 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.95 -9.21 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996972526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.792 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds