Wall clock time and date at job start Tue Mar 31 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 C 1.53002 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.55723 * 29.31973 * 4 3 2 6 6 C 1.52995 * 117.50537 * 243.62529 * 4 3 2 7 7 C 1.53000 * 60.00111 * 252.51072 * 6 4 3 8 8 H 1.09006 * 117.49903 * 107.51185 * 7 6 4 9 9 C 1.50699 * 117.49724 * 252.50796 * 7 6 4 10 10 O 1.21275 * 119.99750 * 68.61266 * 9 7 6 11 11 N 1.34773 * 119.99710 * 248.60323 * 9 7 6 12 12 C 1.46929 * 120.62690 * 179.97438 * 11 9 7 13 13 C 1.53197 * 108.77709 * 233.58950 * 12 11 9 14 14 C 1.53037 * 109.31428 * 305.36793 * 13 12 11 15 15 N 1.46493 * 109.46330 * 181.38278 * 14 13 12 16 16 C 1.36936 * 120.00314 * 154.99825 * 15 14 13 17 17 H 1.08001 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 179.72505 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.53044 * 109.53905 * 61.36187 * 14 13 12 25 25 C 1.46921 * 120.63598 * 359.97438 * 11 9 7 26 26 H 1.09002 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46970 * 299.99622 * 1 2 3 28 28 H 1.08997 * 109.46932 * 59.99681 * 1 2 3 29 29 H 1.08998 * 109.47313 * 240.00663 * 2 1 3 30 30 H 1.08998 * 109.47157 * 119.99816 * 2 1 3 31 31 H 1.09004 * 109.47016 * 60.00406 * 3 2 1 32 32 H 1.08993 * 109.47547 * 300.00393 * 3 2 1 33 33 H 1.08999 * 117.50081 * 145.01755 * 6 4 3 34 34 H 1.09004 * 117.51498 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.58610 * 113.80592 * 12 11 9 36 36 H 1.08996 * 109.70804 * 353.45109 * 12 11 9 37 37 H 1.08998 * 109.49613 * 185.41517 * 13 12 11 38 38 H 1.09004 * 109.49583 * 65.31697 * 13 12 11 39 39 H 1.09000 * 109.46077 * 301.36183 * 14 13 12 40 40 H 0.97000 * 120.00040 * 334.99957 * 15 14 13 41 41 H 0.96999 * 119.99889 * 180.27497 * 19 18 16 42 42 H 1.09000 * 109.49340 * 58.58645 * 24 14 13 43 43 H 1.09002 * 109.49830 * 178.68353 * 24 14 13 44 44 H 1.08999 * 109.58823 * 246.19624 * 25 11 9 45 45 H 1.09002 * 109.58292 * 6.61578 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5852 -0.4806 6 6 4.2760 2.0457 1.2166 7 6 4.2765 2.7946 -0.1176 8 1 3.6515 3.6843 -0.1955 9 6 5.5696 2.8388 -0.8902 10 8 6.0123 1.8264 -1.3898 11 7 6.2338 4.0036 -1.0261 12 6 7.4959 4.0625 -1.7760 13 6 8.5677 4.7028 -0.8881 14 6 8.0679 6.0612 -0.3911 15 7 9.1035 6.6911 0.4315 16 6 9.1376 8.0535 0.5648 17 1 8.4006 8.6637 0.0637 18 6 10.1192 8.6504 1.3438 19 7 10.1552 9.9603 1.4675 20 14 11.3943 7.5952 2.2100 21 1 10.9000 7.2319 3.5624 22 1 11.6324 6.3595 1.4216 23 1 12.6639 8.3552 2.3345 24 6 6.8012 5.8658 0.4453 25 6 5.7097 5.2386 -0.4272 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 5.2110 1.5850 1.5355 34 1 3.6508 2.4429 2.0163 35 1 7.3592 4.6637 -2.6749 36 1 7.8057 3.0551 -2.0539 37 1 9.4827 4.8403 -1.4641 38 1 8.7682 4.0546 -0.0350 39 1 7.8438 6.7003 -1.2451 40 1 9.7652 6.1431 0.8819 41 1 10.8435 10.3777 2.0086 42 1 7.0184 5.2066 1.2858 43 1 6.4590 6.8311 0.8184 44 1 5.4271 5.9359 -1.2159 45 1 4.8396 5.0062 0.1868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996972526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:07 Heat of formation + Delta-G solvation = -35.014105 kcal Electronic energy + Delta-G solvation = -22051.303494 eV Core-core repulsion = 18875.262531 eV Total energy + Delta-G solvation = -3176.040962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43020 -39.26147 -37.94491 -36.24603 -34.75135 -33.91143 -32.19918 -31.50622 -28.44517 -26.88294 -25.18808 -24.31986 -23.35330 -22.73900 -21.72214 -21.32077 -20.01388 -19.34132 -18.39446 -17.08852 -16.72556 -16.28168 -16.03540 -15.87060 -15.54782 -15.30168 -14.96771 -14.84492 -14.58335 -14.17265 -14.04915 -13.67828 -13.56949 -13.28957 -13.06918 -12.94757 -12.87288 -12.66019 -12.22935 -12.18579 -12.07498 -12.03469 -11.91605 -11.79085 -11.64885 -11.35749 -11.17086 -11.03275 -10.84545 -10.72661 -9.70132 -9.31005 -8.01646 -5.34595 1.37903 1.39541 1.45462 1.47209 1.95192 2.48284 2.86327 3.29642 3.39769 3.53242 3.74670 3.81134 3.89832 4.04418 4.08218 4.17549 4.22136 4.30847 4.34212 4.37187 4.39742 4.58655 4.66011 4.73959 4.78941 4.81684 4.85284 4.89650 4.95061 4.98030 5.02829 5.04918 5.08575 5.22889 5.26159 5.38336 5.42778 5.46527 5.53833 5.60402 5.78463 6.22576 6.40193 7.08207 7.13328 7.84920 8.03124 9.19630 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032004 B = 0.003124 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.690071 B = 8959.950252 C = 9187.801949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.116 4.116 5 H 0.094 0.906 6 C -0.139 4.139 7 C -0.197 4.197 8 H 0.148 0.852 9 C 0.538 3.462 10 O -0.589 6.589 11 N -0.604 5.604 12 C 0.120 3.880 13 C -0.130 4.130 14 C 0.175 3.825 15 N -0.753 5.753 16 C -0.223 4.223 17 H 0.062 0.938 18 C -0.065 4.065 19 N -0.983 5.983 20 Si 0.951 3.049 21 H -0.281 1.281 22 H -0.255 1.255 23 H -0.298 1.298 24 C -0.141 4.141 25 C 0.115 3.885 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.363 0.637 41 H 0.257 0.743 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.176 -18.675 -2.801 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.121 4.121 4 C -0.135 4.135 5 H 0.112 0.888 6 C -0.176 4.176 7 C -0.217 4.217 8 H 0.166 0.834 9 C 0.329 3.671 10 O -0.470 6.470 11 N -0.335 5.335 12 C -0.003 4.003 13 C -0.169 4.169 14 C 0.067 3.933 15 N -0.396 5.396 16 C -0.354 4.354 17 H 0.080 0.920 18 C -0.256 4.256 19 N -0.634 5.634 20 Si 0.779 3.221 21 H -0.207 1.207 22 H -0.180 1.180 23 H -0.225 1.225 24 C -0.182 4.182 25 C -0.007 4.007 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.195 0.805 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.988 -18.960 -3.116 26.320 hybrid contribution 1.459 0.131 0.605 1.585 sum -16.529 -18.829 -2.511 25.180 Atomic orbital electron populations 1.21770 0.95028 1.01973 1.02143 1.21498 0.96344 0.96263 1.01941 1.21235 0.90147 0.97730 1.03020 1.22433 0.95842 0.94172 1.01004 0.88800 1.23172 1.02803 1.01201 0.90467 1.22385 0.96612 1.00093 1.02623 0.83424 1.20243 0.85553 0.82052 0.79272 1.90634 1.70172 1.35006 1.51236 1.48169 1.23396 1.08887 1.53095 1.21518 0.82753 1.01917 0.94134 1.22101 0.98850 0.96065 0.99908 1.20402 0.88142 0.92200 0.92510 1.42853 1.34351 1.03082 1.59291 1.19028 1.10215 0.82955 1.23217 0.91989 1.25446 1.01607 0.96526 1.02009 1.69872 1.37612 1.09886 1.46018 0.85468 0.78840 0.78787 0.79014 1.20705 1.17995 1.22507 1.22420 0.96404 1.00533 0.98846 1.21901 0.96823 0.84673 0.97314 0.92475 0.92166 0.92619 0.92673 0.91853 0.90133 0.91165 0.89805 0.85267 0.89996 0.89835 0.90341 0.92453 0.93234 0.80456 0.93462 0.92720 0.91666 0.89980 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.50 5.89 30.60 0.18 -1.32 16 3 C -0.08 -1.05 5.50 30.60 0.17 -0.88 16 4 C -0.12 -2.03 5.25 -10.79 -0.06 -2.08 16 5 H 0.09 2.10 7.60 -2.39 -0.02 2.08 16 6 C -0.14 -2.31 9.88 30.59 0.30 -2.01 16 7 C -0.20 -3.71 4.69 -11.54 -0.05 -3.77 16 8 H 0.15 2.06 6.81 -2.38 -0.02 2.04 16 9 C 0.54 14.39 7.48 87.66 0.66 15.04 16 10 O -0.59 -20.04 15.67 -3.01 -0.05 -20.09 16 11 N -0.60 -15.27 2.97 -818.96 -2.43 -17.70 16 12 C 0.12 3.15 6.43 86.36 0.56 3.71 16 13 C -0.13 -3.88 5.55 30.67 0.17 -3.71 16 14 C 0.18 6.18 2.73 45.02 0.12 6.30 16 15 N -0.75 -33.93 4.92 -322.82 -1.59 -35.52 16 16 C -0.22 -12.30 10.41 84.03 0.87 -11.42 16 17 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 18 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 19 N -0.98 -62.22 13.97 21.65 0.30 -61.92 16 20 Si 0.95 45.31 27.74 68.60 1.90 47.21 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.26 -11.07 6.51 99.48 0.65 -10.42 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 C -0.14 -4.26 5.66 30.67 0.17 -4.09 16 25 C 0.12 2.56 6.30 86.36 0.54 3.10 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.80 7.87 -2.39 -0.02 0.78 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.13 1.50 8.03 -2.38 -0.02 1.48 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.33 7.01 -2.39 -0.02 2.31 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 1.82 8.08 -2.39 -0.02 1.81 16 40 H 0.36 16.03 5.65 -92.71 -0.52 15.50 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.11 1.85 5.67 -2.39 -0.01 1.84 16 Total: -1.00 -69.87 356.13 3.32 -66.55 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.37 Total: 26.68 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.82 Total: -5.22 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.72 Total: -115.14 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Total: -69.87 3.32 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996972526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.540 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds