Wall clock time and date at job start Tue Mar 31 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 C 1.53004 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56237 * 29.30509 * 4 3 2 6 6 C 1.53000 * 117.49802 * 243.61767 * 4 3 2 7 7 C 1.52999 * 117.49802 * 174.99496 * 4 3 2 8 8 H 1.08999 * 117.51963 * 0.02562 * 7 4 3 9 9 C 1.50700 * 117.49650 * 214.97396 * 7 4 3 10 10 O 1.21271 * 120.00279 * 359.97438 * 9 7 4 11 11 N 1.34776 * 119.99811 * 179.97438 * 9 7 4 12 12 C 1.46930 * 120.63037 * 359.97438 * 11 9 7 13 13 C 1.53186 * 108.77576 * 233.62883 * 12 11 9 14 14 C 1.53045 * 109.31590 * 305.36535 * 13 12 11 15 15 C 1.53041 * 109.53408 * 61.36576 * 14 13 12 16 16 H 1.09002 * 109.50018 * 58.58675 * 15 14 13 17 17 N 1.46502 * 109.52245 * 178.66740 * 15 14 13 18 18 C 1.36941 * 120.00039 * 274.91954 * 17 15 14 19 19 H 1.07992 * 119.99806 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99603 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00365 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99618 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46742 * 120.00024 * 22 20 18 25 25 H 1.48496 * 109.47349 * 240.00272 * 22 20 18 26 26 C 1.46929 * 120.63231 * 180.02562 * 11 9 7 27 27 H 1.09001 * 109.46958 * 300.00390 * 1 2 3 28 28 H 1.08999 * 109.47340 * 60.00265 * 1 2 3 29 29 H 1.08998 * 109.47736 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46870 * 239.99061 * 2 1 3 31 31 H 1.09007 * 109.47099 * 120.00003 * 2 1 3 32 32 H 1.08988 * 109.47267 * 59.99656 * 3 2 1 33 33 H 1.09007 * 109.46896 * 299.99512 * 3 2 1 34 34 H 1.08997 * 117.50127 * 145.01532 * 6 4 3 35 35 H 1.08999 * 117.51638 * 359.97438 * 6 4 3 36 36 H 1.08992 * 109.58769 * 353.41995 * 12 11 9 37 37 H 1.09008 * 109.58247 * 113.70087 * 12 11 9 38 38 H 1.09000 * 109.49625 * 65.32030 * 13 12 11 39 39 H 1.09000 * 109.49684 * 185.38136 * 13 12 11 40 40 H 1.08997 * 109.45985 * 301.34439 * 14 13 12 41 41 H 1.09001 * 109.45708 * 181.38466 * 14 13 12 42 42 H 0.97002 * 119.99612 * 94.91224 * 17 15 14 43 43 H 0.96997 * 120.00083 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58283 * 6.57760 * 26 11 9 45 45 H 1.09002 * 109.70060 * 246.22531 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 4.0401 0.5850 -0.4822 6 6 4.2770 2.0452 1.2149 7 6 4.2765 2.7943 -0.1191 8 1 3.6516 3.6841 -0.1962 9 6 5.5690 2.8386 -0.8927 10 8 6.0116 1.8261 -1.3925 11 7 6.2332 4.0034 -1.0291 12 6 5.7094 5.2384 -0.4298 13 6 5.6139 6.3124 -1.5179 14 6 6.9778 6.4711 -2.1937 15 6 7.3789 5.1497 -2.8533 16 1 6.6213 4.8622 -3.5824 17 7 8.6698 5.3108 -3.5272 18 6 8.7192 5.8082 -4.8021 19 1 7.8067 6.0813 -5.3109 20 6 9.9424 5.9614 -5.4403 21 7 11.0546 5.6290 -4.8199 22 14 10.0098 6.6392 -7.1797 23 1 8.6323 6.9343 -7.6497 24 1 10.8150 7.8868 -7.1938 25 1 10.6355 5.6359 -8.0780 26 6 7.4942 4.0625 -1.7808 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8898 33 1 1.6767 1.9562 -0.8901 34 1 5.2121 1.5844 1.5331 35 1 3.6524 2.4424 2.0151 36 1 4.7197 5.0512 -0.0133 37 1 6.3809 5.5744 0.3604 38 1 4.8729 6.0141 -2.2595 39 1 5.3176 7.2602 -1.0685 40 1 7.7232 6.7454 -1.4473 41 1 6.9188 7.2522 -2.9517 42 1 9.4894 5.0653 -3.0701 43 1 11.9092 5.7357 -5.2660 44 1 7.6821 3.0995 -2.2555 45 1 8.3144 4.3026 -1.1042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000134730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:37 Heat of formation + Delta-G solvation = -18.870932 kcal Electronic energy + Delta-G solvation = -22074.471539 eV Core-core repulsion = 18899.130597 eV Total energy + Delta-G solvation = -3175.340942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25030 -38.06619 -36.73827 -34.48189 -34.05182 -32.14219 -31.23736 -28.62464 -27.65411 -25.56831 -24.21244 -22.94116 -22.12446 -22.02823 -20.76963 -19.82038 -18.65922 -17.25094 -17.17536 -15.84571 -15.40215 -15.36074 -14.65809 -14.40436 -14.16418 -14.02992 -13.65830 -13.51626 -13.39894 -12.96226 -12.84647 -12.69025 -12.39371 -12.21080 -12.14906 -11.55013 -11.27446 -11.14875 -11.02191 -10.93337 -10.90759 -10.65827 -10.43526 -10.36726 -10.32219 -10.09738 -10.04415 -9.73830 -9.52378 -8.91491 -8.36830 -6.98512 -5.77631 -3.07181 2.60711 3.10322 3.43297 3.49008 3.51145 3.71060 4.30380 4.56562 4.59119 4.60908 4.80447 4.86735 4.90261 5.01191 5.09240 5.19250 5.27832 5.30524 5.47180 5.49911 5.53962 5.55703 5.57117 5.61188 5.73001 5.75279 5.78910 5.80773 5.85255 5.97807 6.01188 6.06282 6.17074 6.19807 6.26537 6.40100 6.56024 6.73324 6.89137 7.05406 7.62302 7.70016 8.36339 8.40952 9.51596 10.06990 10.42153 11.44983 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.003170 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.407905 B = 8830.354177 C = 9092.944852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.188 4.188 8 H 0.123 0.877 9 C 0.541 3.459 10 O -0.544 6.544 11 N -0.601 5.601 12 C 0.108 3.892 13 C -0.134 4.134 14 C -0.137 4.137 15 C 0.169 3.831 16 H 0.049 0.951 17 N -0.722 5.722 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.106 3.894 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.092 0.908 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.143 -4.807 14.675 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.209 4.209 8 H 0.141 0.859 9 C 0.329 3.671 10 O -0.421 6.421 11 N -0.334 5.334 12 C -0.014 4.014 13 C -0.173 4.173 14 C -0.178 4.178 15 C 0.058 3.942 16 H 0.067 0.933 17 N -0.362 5.362 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.017 4.017 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.908 -5.282 14.212 24.236 hybrid contribution 0.481 0.642 -0.830 1.154 sum -18.427 -4.640 13.382 23.241 Atomic orbital electron populations 1.21781 0.95931 1.01596 1.01742 1.21503 0.95576 0.96552 1.02388 1.21237 0.91987 0.97335 1.02134 1.22452 0.94565 0.95726 1.01034 0.86445 1.23078 1.03055 1.02248 0.90262 1.22335 0.98065 0.98541 1.02007 0.85890 1.19608 0.84531 0.82978 0.80008 1.90685 1.68630 1.33755 1.49061 1.48023 1.24257 1.07894 1.53203 1.21784 0.99279 0.84597 0.95788 1.21947 0.99532 0.97831 0.98000 1.22278 0.94453 1.01162 0.99873 1.20464 0.90302 0.91359 0.92109 0.93260 1.42324 1.02030 1.77034 1.14855 1.19250 0.92693 1.34474 0.90440 0.91113 1.24754 0.95395 1.02187 0.98576 1.69670 0.97034 1.54050 1.37244 0.86114 0.77315 0.78225 0.84519 1.20551 1.21867 1.21816 1.21984 0.83844 1.01877 0.93971 0.92851 0.92717 0.92786 0.91724 0.91847 0.91711 0.91381 0.88369 0.87969 0.90142 0.91441 0.91889 0.91361 0.92476 0.91580 0.78203 0.93510 0.88989 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.91 5.89 -26.74 -0.16 -1.07 16 3 C -0.09 -0.71 5.50 -26.73 -0.15 -0.86 16 4 C -0.12 -1.22 5.25 -90.62 -0.48 -1.69 16 5 H 0.12 1.44 7.60 -51.93 -0.39 1.05 16 6 C -0.15 -1.37 9.88 -26.73 -0.26 -1.64 16 7 C -0.19 -2.10 4.85 -91.77 -0.45 -2.54 16 8 H 0.12 1.12 6.56 -51.93 -0.34 0.78 16 9 C 0.54 8.48 7.48 -10.99 -0.08 8.40 16 10 O -0.54 -10.71 15.67 5.56 0.09 -10.62 16 11 N -0.60 -9.16 2.97 -172.80 -0.51 -9.67 16 12 C 0.11 1.27 6.35 -3.71 -0.02 1.25 16 13 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 14 C -0.14 -2.36 5.47 -26.69 -0.15 -2.50 16 15 C 0.17 3.42 2.92 -67.83 -0.20 3.22 16 16 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 17 N -0.72 -18.24 5.13 -53.33 -0.27 -18.51 16 18 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 C 0.11 1.94 5.90 -3.73 -0.02 1.92 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 7.88 -51.94 -0.41 0.03 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.70 8.03 -51.93 -0.42 0.29 16 36 H 0.08 0.73 5.51 -51.93 -0.29 0.44 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.09 1.91 7.00 -51.93 -0.36 1.55 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -32.11 359.05 -9.58 -41.69 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.99 Total: 7.00 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.00 Total: -5.26 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.06 Total: -55.76 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.11 -9.58 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000134730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.821 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds