Wall clock time and date at job start Tue Mar 31 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 C 1.53004 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56237 * 29.30509 * 4 3 2 6 6 C 1.53000 * 117.49802 * 243.61767 * 4 3 2 7 7 C 1.52999 * 117.49802 * 174.99496 * 4 3 2 8 8 H 1.08999 * 117.51963 * 0.02562 * 7 4 3 9 9 C 1.50700 * 117.49650 * 214.97396 * 7 4 3 10 10 O 1.21271 * 120.00279 * 359.97438 * 9 7 4 11 11 N 1.34776 * 119.99811 * 179.97438 * 9 7 4 12 12 C 1.46930 * 120.63037 * 359.97438 * 11 9 7 13 13 C 1.53186 * 108.77576 * 233.62883 * 12 11 9 14 14 C 1.53045 * 109.31590 * 305.36535 * 13 12 11 15 15 C 1.53041 * 109.53408 * 61.36576 * 14 13 12 16 16 H 1.09002 * 109.50018 * 58.58675 * 15 14 13 17 17 N 1.46502 * 109.52245 * 178.66740 * 15 14 13 18 18 C 1.36941 * 120.00039 * 274.91954 * 17 15 14 19 19 H 1.07992 * 119.99806 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99603 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00365 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99618 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46742 * 120.00024 * 22 20 18 25 25 H 1.48496 * 109.47349 * 240.00272 * 22 20 18 26 26 C 1.46929 * 120.63231 * 180.02562 * 11 9 7 27 27 H 1.09001 * 109.46958 * 300.00390 * 1 2 3 28 28 H 1.08999 * 109.47340 * 60.00265 * 1 2 3 29 29 H 1.08998 * 109.47736 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46870 * 239.99061 * 2 1 3 31 31 H 1.09007 * 109.47099 * 120.00003 * 2 1 3 32 32 H 1.08988 * 109.47267 * 59.99656 * 3 2 1 33 33 H 1.09007 * 109.46896 * 299.99512 * 3 2 1 34 34 H 1.08997 * 117.50127 * 145.01532 * 6 4 3 35 35 H 1.08999 * 117.51638 * 359.97438 * 6 4 3 36 36 H 1.08992 * 109.58769 * 353.41995 * 12 11 9 37 37 H 1.09008 * 109.58247 * 113.70087 * 12 11 9 38 38 H 1.09000 * 109.49625 * 65.32030 * 13 12 11 39 39 H 1.09000 * 109.49684 * 185.38136 * 13 12 11 40 40 H 1.08997 * 109.45985 * 301.34439 * 14 13 12 41 41 H 1.09001 * 109.45708 * 181.38466 * 14 13 12 42 42 H 0.97002 * 119.99612 * 94.91224 * 17 15 14 43 43 H 0.96997 * 120.00083 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58283 * 6.57760 * 26 11 9 45 45 H 1.09002 * 109.70060 * 246.22531 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 4.0401 0.5850 -0.4822 6 6 4.2770 2.0452 1.2149 7 6 4.2765 2.7943 -0.1191 8 1 3.6516 3.6841 -0.1962 9 6 5.5690 2.8386 -0.8927 10 8 6.0116 1.8261 -1.3925 11 7 6.2332 4.0034 -1.0291 12 6 5.7094 5.2384 -0.4298 13 6 5.6139 6.3124 -1.5179 14 6 6.9778 6.4711 -2.1937 15 6 7.3789 5.1497 -2.8533 16 1 6.6213 4.8622 -3.5824 17 7 8.6698 5.3108 -3.5272 18 6 8.7192 5.8082 -4.8021 19 1 7.8067 6.0813 -5.3109 20 6 9.9424 5.9614 -5.4403 21 7 11.0546 5.6290 -4.8199 22 14 10.0098 6.6392 -7.1797 23 1 8.6323 6.9343 -7.6497 24 1 10.8150 7.8868 -7.1938 25 1 10.6355 5.6359 -8.0780 26 6 7.4942 4.0625 -1.7808 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8898 33 1 1.6767 1.9562 -0.8901 34 1 5.2121 1.5844 1.5331 35 1 3.6524 2.4424 2.0151 36 1 4.7197 5.0512 -0.0133 37 1 6.3809 5.5744 0.3604 38 1 4.8729 6.0141 -2.2595 39 1 5.3176 7.2602 -1.0685 40 1 7.7232 6.7454 -1.4473 41 1 6.9188 7.2522 -2.9517 42 1 9.4894 5.0653 -3.0701 43 1 11.9092 5.7357 -5.2660 44 1 7.6821 3.0995 -2.2555 45 1 8.3144 4.3026 -1.1042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000134730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:36 Heat of formation + Delta-G solvation = -38.182866 kcal Electronic energy + Delta-G solvation = -22075.308967 eV Core-core repulsion = 18899.130597 eV Total energy + Delta-G solvation = -3176.178370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43782 -39.21972 -37.87510 -36.22489 -34.73297 -33.80466 -32.77606 -30.31706 -28.39379 -26.74752 -26.01904 -24.18508 -23.39868 -22.76602 -21.56831 -21.19821 -19.87828 -19.16884 -18.36571 -17.08200 -16.81611 -16.29053 -16.03678 -15.64541 -15.45224 -15.27651 -15.08811 -14.85127 -14.69300 -14.11206 -13.94573 -13.74859 -13.57766 -13.08597 -13.00932 -12.89910 -12.87151 -12.36356 -12.21997 -12.18269 -12.10192 -11.92819 -11.85246 -11.73893 -11.69247 -11.60037 -11.15043 -10.95905 -10.86302 -10.74967 -9.69497 -9.06108 -7.98444 -5.28361 1.43857 1.45810 1.46488 1.55631 1.91206 2.53689 2.86247 3.34273 3.43270 3.71714 3.77922 3.86100 3.98645 4.03047 4.09562 4.20326 4.22663 4.29143 4.33500 4.33884 4.41061 4.59630 4.67139 4.75872 4.81530 4.85038 4.86734 4.92813 4.97552 5.00418 5.06629 5.10445 5.16518 5.23898 5.38427 5.39188 5.41348 5.43714 5.50567 5.54560 5.57516 6.23286 6.43736 7.14819 7.28931 8.01261 8.25980 9.25152 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.003170 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.407905 B = 8830.354177 C = 9092.944852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.126 4.126 5 H 0.085 0.915 6 C -0.128 4.128 7 C -0.192 4.192 8 H 0.156 0.844 9 C 0.531 3.469 10 O -0.597 6.597 11 N -0.601 5.601 12 C 0.105 3.895 13 C -0.125 4.125 14 C -0.128 4.128 15 C 0.168 3.832 16 H 0.029 0.971 17 N -0.736 5.736 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.118 3.882 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.116 -3.325 16.554 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.145 4.145 5 H 0.104 0.896 6 C -0.165 4.165 7 C -0.212 4.212 8 H 0.173 0.827 9 C 0.321 3.679 10 O -0.479 6.479 11 N -0.332 5.332 12 C -0.016 4.016 13 C -0.163 4.163 14 C -0.168 4.168 15 C 0.059 3.941 16 H 0.047 0.953 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.222 1.222 26 C -0.006 4.006 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.139 0.861 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.951 -3.770 16.123 27.496 hybrid contribution 1.385 0.112 -1.385 1.961 sum -20.567 -3.659 14.739 25.566 Atomic orbital electron populations 1.21762 0.94883 1.01952 1.02224 1.21506 0.96458 0.96444 1.01794 1.21220 0.89900 0.97606 1.03159 1.22459 0.96054 0.94195 1.01746 0.89639 1.23209 1.02700 1.00448 0.90144 1.22356 0.95811 1.00256 1.02809 0.82699 1.20539 0.85694 0.82095 0.79539 1.90662 1.70237 1.35665 1.51314 1.48132 1.22992 1.09519 1.52581 1.22121 1.01696 0.82315 0.95449 1.21909 0.96136 1.00142 0.98132 1.22074 0.97500 0.97868 0.99393 1.20615 0.87579 0.93835 0.92097 0.95303 1.42508 1.03411 1.77117 1.14599 1.19575 0.92735 1.33286 0.91439 0.90901 1.25583 0.95152 1.03423 1.02617 1.69824 0.97374 1.55891 1.38858 0.85065 0.77745 0.77203 0.79701 1.19079 1.21648 1.22172 1.21547 0.86076 0.99214 0.93780 0.91732 0.92816 0.92591 0.93313 0.91609 0.89328 0.91543 0.89775 0.84196 0.86088 0.89846 0.92034 0.87717 0.92487 0.93510 0.79512 0.93935 0.92491 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.67 5.89 30.59 0.18 -1.49 16 3 C -0.08 -1.07 5.50 30.59 0.17 -0.90 16 4 C -0.13 -2.37 5.25 -10.79 -0.06 -2.42 16 5 H 0.09 2.18 7.60 -2.39 -0.02 2.16 16 6 C -0.13 -1.94 9.88 30.59 0.30 -1.64 16 7 C -0.19 -3.74 4.85 -11.54 -0.06 -3.79 16 8 H 0.16 2.02 6.56 -2.39 -0.02 2.00 16 9 C 0.53 16.43 7.48 87.66 0.66 17.09 16 10 O -0.60 -24.65 15.67 -3.00 -0.05 -24.70 16 11 N -0.60 -17.72 2.97 -819.01 -2.43 -20.15 16 12 C 0.11 2.06 6.35 86.36 0.55 2.61 16 13 C -0.12 -2.77 6.08 30.67 0.19 -2.59 16 14 C -0.13 -4.30 5.47 30.62 0.17 -4.13 16 15 C 0.17 6.98 2.92 45.05 0.13 7.12 16 16 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 17 N -0.74 -38.59 5.13 -322.65 -1.65 -40.24 16 18 C -0.24 -13.63 9.93 84.03 0.83 -12.80 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 21 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 22 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 26 C 0.12 4.47 5.90 86.35 0.51 4.98 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.78 7.88 -2.39 -0.02 0.76 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.14 1.14 8.03 -2.39 -0.02 1.12 16 36 H 0.12 1.47 5.51 -2.39 -0.01 1.46 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.37 20.89 7.80 -92.71 -0.72 20.17 16 43 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.06 2.54 7.00 -2.39 -0.02 2.53 16 45 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -74.13 359.05 3.16 -70.98 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.23 Total: 28.06 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.75 Total: -2.85 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -3.81 Total: -120.63 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -74.13 3.16 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000134730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.794 kcal (2) G-P(sol) polarization free energy of solvation -74.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds