Wall clock time and date at job start Tue Mar 31 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47161 * 2 1 4 4 C 1.52997 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.08992 * 115.55014 * 29.32852 * 4 3 2 6 6 C 1.53075 * 117.50978 * 243.60228 * 4 3 2 7 7 C 1.52989 * 59.98624 * 252.52443 * 6 4 3 8 8 H 1.09007 * 117.49663 * 107.50160 * 7 6 4 9 9 C 1.50698 * 117.50059 * 252.49938 * 7 6 4 10 10 O 1.21286 * 119.99763 * 68.74800 * 9 7 6 11 11 N 1.34777 * 119.99974 * 248.74853 * 9 7 6 12 12 C 1.46503 * 119.99771 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.50036 * 35.05963 * 12 11 9 14 14 C 1.53043 * 109.49797 * 155.15992 * 12 11 9 15 15 C 1.53037 * 109.53544 * 181.31330 * 14 12 11 16 16 C 1.53629 * 109.24260 * 298.50851 * 15 14 12 17 17 N 1.46918 * 108.53968 * 54.86315 * 16 15 14 18 18 C 1.36945 * 120.63488 * 126.36855 * 17 16 15 19 19 H 1.08004 * 119.99300 * 331.54772 * 18 17 16 20 20 C 1.38804 * 120.00169 * 151.54498 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.08859 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.08813 * 20 18 17 23 23 H 1.48499 * 109.47137 * 59.99982 * 22 20 18 24 24 H 1.48496 * 109.47053 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46625 * 300.00079 * 22 20 18 26 26 C 1.46922 * 118.74045 * 306.08706 * 17 16 15 27 27 H 1.09005 * 109.47574 * 300.00101 * 1 2 3 28 28 H 1.09000 * 109.47189 * 60.00349 * 1 2 3 29 29 H 1.09003 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47213 * 239.99893 * 2 1 3 31 31 H 1.09000 * 109.47189 * 119.99651 * 2 1 3 32 32 H 1.09005 * 109.46959 * 59.99522 * 3 2 1 33 33 H 1.09000 * 109.46784 * 299.99899 * 3 2 1 34 34 H 1.09006 * 117.51166 * 145.04296 * 6 4 3 35 35 H 1.09002 * 117.49803 * 0.02562 * 6 4 3 36 36 H 0.96994 * 120.00086 * 359.97438 * 11 9 7 37 37 H 1.08994 * 109.46121 * 301.33715 * 14 12 11 38 38 H 1.09000 * 109.45526 * 61.29259 * 14 12 11 39 39 H 1.08995 * 109.50109 * 58.58577 * 15 14 12 40 40 H 1.09004 * 109.49335 * 178.65549 * 15 14 12 41 41 H 1.08998 * 109.74365 * 295.11890 * 16 15 14 42 42 H 1.09002 * 109.65895 * 174.55127 * 16 15 14 43 43 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.59505 * 173.65175 * 26 17 16 45 45 H 1.09005 * 109.59063 * 294.07910 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0398 0.5853 -0.4826 6 6 4.2775 2.0460 1.2153 7 6 4.2763 2.7946 -0.1190 8 1 3.6510 3.6841 -0.1965 9 6 5.5685 2.8391 -0.8931 10 8 6.0098 1.8270 -1.3951 11 7 6.2338 4.0035 -1.0275 12 6 7.4897 4.0468 -1.7805 13 1 7.4379 3.3476 -2.6150 14 6 7.7172 5.4634 -2.3134 15 6 9.0124 5.5019 -3.1277 16 6 10.1938 5.1326 -2.2177 17 7 9.9132 3.8331 -1.5923 18 6 10.8133 2.8052 -1.6851 19 1 11.4743 2.7415 -2.5369 20 6 10.8762 1.8452 -0.6845 21 7 10.3319 2.0824 0.4902 22 14 11.7333 0.2166 -1.0051 23 1 13.1553 0.4657 -1.3531 24 1 11.6622 -0.6285 0.2139 25 1 11.0631 -0.4821 -2.1311 26 6 8.6514 3.6592 -0.8600 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2130 1.5856 1.5333 35 1 3.6528 2.4425 2.0156 36 1 5.8807 4.8129 -0.6263 37 1 6.8799 5.7510 -2.9490 38 1 7.7933 6.1581 -1.4769 39 1 8.9466 4.7894 -3.9498 40 1 9.1614 6.5053 -3.5268 41 1 10.3146 5.8916 -1.4449 42 1 11.1058 5.0635 -2.8107 43 1 10.3762 1.4117 1.1896 44 1 8.5453 2.6176 -0.5568 45 1 8.6489 4.3005 0.0213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008453123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:27 Heat of formation + Delta-G solvation = -15.483479 kcal Electronic energy + Delta-G solvation = -22415.577232 eV Core-core repulsion = 19240.383181 eV Total energy + Delta-G solvation = -3175.194051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.74197 -37.82714 -36.63326 -34.05076 -33.89297 -32.60197 -30.02238 -29.00324 -27.50719 -25.23259 -24.10364 -22.19473 -22.04898 -21.43869 -20.48847 -19.72719 -19.09893 -16.96513 -16.71675 -15.57162 -15.34234 -14.92308 -14.72158 -14.13962 -14.01807 -13.89357 -13.52380 -13.32608 -12.94757 -12.81298 -12.42342 -12.29133 -12.20071 -12.05029 -11.85048 -11.42179 -11.10555 -10.99041 -10.95321 -10.73384 -10.67809 -10.45848 -10.24090 -10.16881 -9.98859 -9.93984 -9.91285 -9.48755 -9.24686 -8.46659 -8.39231 -6.61746 -5.72432 -3.16372 2.92496 3.44070 3.50662 3.52225 3.53523 3.98736 4.54689 4.59304 4.79662 4.84352 4.99904 5.04670 5.18637 5.28441 5.39519 5.41651 5.43466 5.57504 5.58319 5.64794 5.66471 5.70686 5.73867 5.78960 5.90376 6.03441 6.11498 6.12441 6.13794 6.17820 6.35815 6.38144 6.44762 6.54354 6.73469 6.80425 6.98294 7.02766 7.34362 7.76204 7.85996 8.03102 8.51630 8.75866 9.26277 9.90201 10.45364 11.35365 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.004356 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.025514 B = 6426.319874 C = 7639.846644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.122 4.122 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.187 4.187 8 H 0.118 0.882 9 C 0.537 3.463 10 O -0.534 6.534 11 N -0.718 5.718 12 C 0.116 3.884 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.131 4.131 16 C 0.142 3.858 17 N -0.589 5.589 18 C -0.257 4.257 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.168 3.832 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.392 0.608 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.094 0.906 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 4.085 -0.197 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.125 4.125 4 C -0.141 4.141 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.209 4.209 8 H 0.136 0.864 9 C 0.323 3.677 10 O -0.411 6.411 11 N -0.367 5.367 12 C 0.011 3.989 13 H 0.099 0.901 14 C -0.154 4.154 15 C -0.171 4.171 16 C 0.016 3.984 17 N -0.312 5.312 18 C -0.387 4.387 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.041 3.959 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.225 0.775 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -16.606 3.236 -0.421 16.923 hybrid contribution 0.268 -0.260 0.150 0.403 sum -16.338 2.975 -0.271 16.609 Atomic orbital electron populations 1.21780 0.96036 1.01521 1.01636 1.21509 0.95435 0.96676 1.02475 1.21223 0.92202 0.97192 1.01911 1.22441 0.94284 0.95825 1.01509 0.86445 1.23105 1.03202 1.02150 0.90155 1.22308 0.98068 0.98274 1.02219 0.86438 1.19555 0.84409 0.83592 0.80155 1.90729 1.68513 1.33676 1.48153 1.45995 1.24775 1.10271 1.55702 1.21963 0.83977 0.96737 0.96209 0.90147 1.21669 0.97819 0.96443 0.99424 1.22076 0.95978 1.00049 0.98991 1.21045 0.94850 0.88480 0.94051 1.43974 1.16649 1.08079 1.62465 1.19105 1.14898 1.02380 1.02310 0.91686 1.25042 0.99593 1.00074 0.94509 1.70008 1.48341 1.33795 1.02175 0.86370 0.79208 0.84003 0.77197 1.20896 1.21616 1.20874 1.21074 0.81805 1.02531 0.90455 0.92871 0.92825 0.92831 0.91748 0.91762 0.91796 0.91598 0.87983 0.88127 0.77508 0.93176 0.92299 0.92133 0.92696 0.96387 0.92625 0.93644 0.88831 0.96589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.11 5.89 -26.73 -0.16 -1.27 16 3 C -0.09 -0.84 5.50 -26.73 -0.15 -0.98 16 4 C -0.12 -1.53 5.25 -90.58 -0.48 -2.00 16 5 H 0.12 1.75 7.60 -51.93 -0.39 1.36 16 6 C -0.15 -1.84 9.88 -26.70 -0.26 -2.11 16 7 C -0.19 -2.48 5.91 -91.78 -0.54 -3.03 16 8 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 9 C 0.54 9.72 7.58 -10.99 -0.08 9.64 16 10 O -0.53 -12.29 15.92 5.55 0.09 -12.21 16 11 N -0.72 -12.11 5.08 -53.68 -0.27 -12.38 16 12 C 0.12 2.34 2.60 -67.80 -0.18 2.16 16 13 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 14 C -0.12 -1.91 5.35 -26.69 -0.14 -2.05 16 15 C -0.13 -2.27 6.10 -26.39 -0.16 -2.43 16 16 C 0.14 3.01 6.54 -3.49 -0.02 2.99 16 17 N -0.59 -15.29 2.99 -172.05 -0.51 -15.80 16 18 C -0.26 -7.36 9.58 -15.06 -0.14 -7.51 16 19 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 20 C 0.01 0.20 4.92 -17.43 -0.09 0.12 16 21 N -0.90 -27.19 11.20 55.49 0.62 -26.57 16 22 Si 0.90 22.85 29.59 -169.99 -5.03 17.82 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.17 4.20 4.87 -3.71 -0.02 4.18 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 36 H 0.39 5.20 8.60 -40.82 -0.35 4.84 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 2.75 6.06 -51.93 -0.31 2.44 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -33.09 359.86 -9.90 -42.99 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.16 Total: 3.80 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.05 Total: -3.07 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.17 Total: -54.76 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.09 -9.90 -42.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008453123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.504 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds