Wall clock time and date at job start Tue Mar 31 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 C 1.52995 * 109.47098 * 239.99354 * 2 1 3 5 5 C 1.53001 * 109.46646 * 119.99821 * 2 1 3 6 6 H 1.09003 * 115.54952 * 274.33046 * 5 2 1 7 7 C 1.52999 * 117.51736 * 128.63007 * 5 2 1 8 8 C 1.53000 * 117.49932 * 60.00033 * 5 2 1 9 9 H 1.08999 * 117.50336 * 0.02562 * 8 5 2 10 10 C 1.50705 * 117.49907 * 215.00288 * 8 5 2 11 11 O 1.21286 * 119.99804 * 359.97438 * 10 8 5 12 12 N 1.34774 * 120.00141 * 180.02562 * 10 8 5 13 13 C 1.46499 * 119.99884 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85087 * 336.18504 * 13 12 10 15 15 C 1.53777 * 113.61486 * 107.49951 * 13 12 10 16 16 C 1.53785 * 87.08241 * 139.97730 * 15 13 12 17 17 H 1.09002 * 113.61570 * 220.01842 * 16 15 13 18 18 N 1.46500 * 113.68813 * 89.12417 * 16 15 13 19 19 C 1.36936 * 119.99618 * 105.94148 * 18 16 15 20 20 H 1.07990 * 120.00427 * 359.97438 * 19 18 16 21 21 C 1.38824 * 119.99622 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00063 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99662 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47100 * 90.00073 * 23 21 19 25 25 H 1.48504 * 109.47148 * 209.99685 * 23 21 19 26 26 H 1.48493 * 109.47533 * 329.99863 * 23 21 19 27 27 C 1.53781 * 87.08241 * 334.56547 * 16 15 13 28 28 H 1.08994 * 109.47133 * 300.00345 * 1 2 3 29 29 H 1.09006 * 109.46259 * 60.00089 * 1 2 3 30 30 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46948 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47051 * 299.99735 * 3 2 1 33 33 H 1.09004 * 109.47254 * 59.99642 * 3 2 1 34 34 H 1.09002 * 109.47718 * 300.00355 * 4 2 1 35 35 H 1.09006 * 109.47111 * 60.01079 * 4 2 1 36 36 H 1.09004 * 109.46925 * 180.02562 * 4 2 1 37 37 H 1.09007 * 117.49655 * 145.03008 * 7 5 2 38 38 H 1.08995 * 117.49995 * 0.02562 * 7 5 2 39 39 H 0.97004 * 120.00019 * 359.97438 * 12 10 8 40 40 H 1.08999 * 113.61947 * 25.43156 * 15 13 12 41 41 H 1.08997 * 113.61348 * 254.52371 * 15 13 12 42 42 H 0.96998 * 120.00149 * 285.93056 * 18 16 15 43 43 H 0.96996 * 120.00147 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.61578 * 139.97748 * 27 16 15 45 45 H 1.09001 * 113.61682 * 270.80327 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2493 6 1 2.1266 -0.1060 2.1449 7 6 3.0742 -1.8313 1.0520 8 6 1.6356 -2.1852 1.4344 9 1 1.0067 -2.6347 0.6659 10 6 1.3876 -2.6661 2.8409 11 8 1.5113 -1.9012 3.7740 12 7 1.0295 -3.9465 3.0620 13 6 0.7879 -4.4138 4.4293 14 1 1.3033 -3.8135 5.1791 15 6 -0.6979 -4.6542 4.7447 16 6 -0.2504 -5.9066 5.5167 17 1 -0.9089 -6.7640 5.3773 18 7 0.0593 -5.6502 6.9255 19 6 -0.8072 -6.0614 7.9028 20 1 -1.7191 -6.5742 7.6351 21 6 -0.5135 -5.8189 9.2377 22 7 0.5981 -5.1943 9.5640 23 14 -1.6960 -6.3791 10.5709 24 1 -1.3415 -7.7558 11.0003 25 1 -1.6038 -5.4591 11.7329 26 1 -3.0825 -6.3680 10.0394 27 6 0.9896 -5.9280 4.6074 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7490 -1.2491 35 1 1.6769 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 3.8413 -1.9464 1.8179 38 1 3.3919 -2.0477 0.0321 39 1 0.9310 -4.5583 2.3158 40 1 -1.3008 -4.8763 3.8642 41 1 -1.1396 -3.8853 5.3784 42 1 0.8783 -5.1894 7.1659 43 1 0.8036 -5.0252 10.4968 44 1 1.9101 -6.1873 5.1303 45 1 0.8485 -6.4995 3.6900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020384117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:55 Heat of formation + Delta-G solvation = 3.015328 kcal Electronic energy + Delta-G solvation = -21867.769560 eV Core-core repulsion = 18693.377678 eV Total energy + Delta-G solvation = -3174.391882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31494 -38.92801 -37.55970 -34.00519 -33.95786 -32.53395 -29.70463 -27.70614 -27.52009 -25.39676 -25.08952 -23.73314 -23.07297 -22.21048 -20.15172 -18.74268 -18.54145 -17.37698 -17.22088 -16.02823 -15.69276 -14.84808 -14.75970 -14.50660 -14.32385 -13.96755 -13.89451 -13.13647 -12.93961 -12.80756 -12.68314 -12.57031 -12.05618 -11.98643 -11.94974 -11.87358 -11.65674 -11.40749 -11.26426 -10.87194 -10.82574 -10.77885 -10.41331 -10.24948 -10.17067 -10.11750 -9.86893 -9.69959 -9.47648 -8.90026 -8.64239 -6.99207 -5.77970 -3.07986 2.63126 3.31204 3.43826 3.48760 3.50964 3.72489 4.36557 4.49771 4.57291 4.61764 4.78516 4.88527 4.92878 5.03809 5.14243 5.27419 5.28645 5.36203 5.41555 5.41791 5.46386 5.49946 5.52805 5.66303 5.67578 5.77959 5.79345 5.89117 5.92282 6.00431 6.02441 6.10834 6.11062 6.20000 6.25623 6.40307 6.65923 6.75178 6.81955 7.06727 7.70048 7.75162 8.40248 8.45540 9.50924 10.07483 10.41504 11.44304 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034825 B = 0.002856 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.837967 B = 9802.760819 C = 9989.294064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.139 4.139 4 C -0.146 4.146 5 C -0.108 4.108 6 H 0.117 0.883 7 C -0.154 4.154 8 C -0.186 4.186 9 H 0.120 0.880 10 C 0.537 3.463 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.125 3.875 14 H 0.112 0.888 15 C -0.184 4.184 16 C 0.172 3.828 17 H 0.067 0.933 18 N -0.706 5.706 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.164 4.164 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.396 0.604 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.072 0.928 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 7.123 -24.277 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 C -0.196 4.196 4 C -0.203 4.203 5 C -0.126 4.126 6 H 0.135 0.865 7 C -0.192 4.192 8 C -0.207 4.207 9 H 0.137 0.863 10 C 0.323 3.677 11 O -0.416 6.416 12 N -0.364 5.364 13 C 0.022 3.978 14 H 0.130 0.870 15 C -0.227 4.227 16 C 0.058 3.942 17 H 0.085 0.915 18 N -0.344 5.344 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.203 4.203 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.258 7.599 -23.426 24.842 hybrid contribution -0.465 -0.475 0.469 0.814 sum 2.793 7.125 -22.957 24.199 Atomic orbital electron populations 1.21857 0.94152 1.01981 1.01790 1.20104 0.95632 0.95287 0.93008 1.21833 1.01121 0.94788 1.01843 1.22027 1.01178 1.00249 0.96844 1.22441 1.01140 0.89340 0.99727 0.86482 1.23199 0.90685 1.02215 1.03058 1.22291 1.01099 1.01234 0.96108 0.86260 1.19689 0.76235 0.82261 0.89500 1.90720 1.51539 1.54709 1.44650 1.46052 1.69734 1.10885 1.09693 1.22631 0.97687 0.94870 0.82658 0.86976 1.24309 0.95275 1.02641 1.00425 1.20909 0.93652 0.94692 0.84903 0.91493 1.42198 1.25080 1.68525 0.98639 1.19267 1.01024 1.30946 0.86350 0.90934 1.24791 0.97699 1.01067 0.97262 1.69666 1.24737 1.46300 1.17090 0.86158 0.80238 0.77856 0.81730 1.21652 1.21728 1.20691 1.23877 1.01448 0.94554 1.00462 0.92309 0.92705 0.92612 0.92473 0.92613 0.92374 0.92551 0.92597 0.92139 0.88427 0.87403 0.77065 0.91327 0.91088 0.77977 0.93365 0.90915 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.31 37.16 0.31 -0.85 16 2 C -0.04 -0.32 0.88 -154.51 -0.14 -0.46 16 3 C -0.14 -1.03 8.46 37.16 0.31 -0.72 16 4 C -0.15 -0.94 7.07 37.16 0.26 -0.68 16 5 C -0.11 -1.10 4.66 -90.62 -0.42 -1.52 16 6 H 0.12 1.47 7.64 -51.93 -0.40 1.08 16 7 C -0.15 -1.42 9.27 -26.73 -0.25 -1.66 16 8 C -0.19 -1.96 5.04 -91.77 -0.46 -2.43 16 9 H 0.12 1.01 7.07 -51.93 -0.37 0.64 16 10 C 0.54 8.02 7.61 -10.98 -0.08 7.93 16 11 O -0.54 -10.63 15.86 5.55 0.09 -10.54 16 12 N -0.71 -9.74 5.35 -53.01 -0.28 -10.03 16 13 C 0.13 2.14 4.13 -67.11 -0.28 1.86 16 14 H 0.11 2.32 7.46 -51.93 -0.39 1.93 16 15 C -0.18 -3.32 7.68 -25.92 -0.20 -3.52 16 16 C 0.17 3.40 4.55 -67.12 -0.31 3.09 16 17 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 18 N -0.71 -17.93 5.31 -52.63 -0.28 -18.21 16 19 C -0.24 -6.86 9.97 -15.06 -0.15 -7.01 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C -0.16 -2.63 7.57 -25.91 -0.20 -2.83 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.46 7.29 -51.93 -0.38 0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.35 7.07 -51.93 -0.37 -0.02 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.37 6.97 -51.93 -0.36 0.00 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.11 0.75 5.85 -51.93 -0.30 0.45 16 39 H 0.40 4.04 8.73 -40.82 -0.36 3.68 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.39 10.50 7.90 -40.82 -0.32 10.18 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -32.56 360.95 -8.88 -41.44 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.86 Total: 11.38 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.69 Total: -9.22 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.16 Total: -56.04 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.56 -8.88 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020384117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.459 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds