Wall clock time and date at job start Tue Mar 31 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 C 1.52995 * 109.47098 * 239.99354 * 2 1 3 5 5 C 1.53001 * 109.46646 * 119.99821 * 2 1 3 6 6 H 1.09003 * 115.54952 * 274.33046 * 5 2 1 7 7 C 1.52999 * 117.51736 * 128.63007 * 5 2 1 8 8 C 1.53000 * 117.49932 * 60.00033 * 5 2 1 9 9 H 1.08999 * 117.50336 * 0.02562 * 8 5 2 10 10 C 1.50705 * 117.49907 * 215.00288 * 8 5 2 11 11 O 1.21286 * 119.99804 * 359.97438 * 10 8 5 12 12 N 1.34774 * 120.00141 * 180.02562 * 10 8 5 13 13 C 1.46499 * 119.99884 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85087 * 336.18504 * 13 12 10 15 15 C 1.53777 * 113.61486 * 107.49951 * 13 12 10 16 16 C 1.53785 * 87.08241 * 139.97730 * 15 13 12 17 17 H 1.09002 * 113.61570 * 220.01842 * 16 15 13 18 18 N 1.46500 * 113.68813 * 89.12417 * 16 15 13 19 19 C 1.36936 * 119.99618 * 105.94148 * 18 16 15 20 20 H 1.07990 * 120.00427 * 359.97438 * 19 18 16 21 21 C 1.38824 * 119.99622 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00063 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99662 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47100 * 90.00073 * 23 21 19 25 25 H 1.48504 * 109.47148 * 209.99685 * 23 21 19 26 26 H 1.48493 * 109.47533 * 329.99863 * 23 21 19 27 27 C 1.53781 * 87.08241 * 334.56547 * 16 15 13 28 28 H 1.08994 * 109.47133 * 300.00345 * 1 2 3 29 29 H 1.09006 * 109.46259 * 60.00089 * 1 2 3 30 30 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46948 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47051 * 299.99735 * 3 2 1 33 33 H 1.09004 * 109.47254 * 59.99642 * 3 2 1 34 34 H 1.09002 * 109.47718 * 300.00355 * 4 2 1 35 35 H 1.09006 * 109.47111 * 60.01079 * 4 2 1 36 36 H 1.09004 * 109.46925 * 180.02562 * 4 2 1 37 37 H 1.09007 * 117.49655 * 145.03008 * 7 5 2 38 38 H 1.08995 * 117.49995 * 0.02562 * 7 5 2 39 39 H 0.97004 * 120.00019 * 359.97438 * 12 10 8 40 40 H 1.08999 * 113.61947 * 25.43156 * 15 13 12 41 41 H 1.08997 * 113.61348 * 254.52371 * 15 13 12 42 42 H 0.96998 * 120.00149 * 285.93056 * 18 16 15 43 43 H 0.96996 * 120.00147 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.61578 * 139.97748 * 27 16 15 45 45 H 1.09001 * 113.61682 * 270.80327 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2493 6 1 2.1266 -0.1060 2.1449 7 6 3.0742 -1.8313 1.0520 8 6 1.6356 -2.1852 1.4344 9 1 1.0067 -2.6347 0.6659 10 6 1.3876 -2.6661 2.8409 11 8 1.5113 -1.9012 3.7740 12 7 1.0295 -3.9465 3.0620 13 6 0.7879 -4.4138 4.4293 14 1 1.3033 -3.8135 5.1791 15 6 -0.6979 -4.6542 4.7447 16 6 -0.2504 -5.9066 5.5167 17 1 -0.9089 -6.7640 5.3773 18 7 0.0593 -5.6502 6.9255 19 6 -0.8072 -6.0614 7.9028 20 1 -1.7191 -6.5742 7.6351 21 6 -0.5135 -5.8189 9.2377 22 7 0.5981 -5.1943 9.5640 23 14 -1.6960 -6.3791 10.5709 24 1 -1.3415 -7.7558 11.0003 25 1 -1.6038 -5.4591 11.7329 26 1 -3.0825 -6.3680 10.0394 27 6 0.9896 -5.9280 4.6074 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7490 -1.2491 35 1 1.6769 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 3.8413 -1.9464 1.8179 38 1 3.3919 -2.0477 0.0321 39 1 0.9310 -4.5583 2.3158 40 1 -1.3008 -4.8763 3.8642 41 1 -1.1396 -3.8853 5.3784 42 1 0.8783 -5.1894 7.1659 43 1 0.8036 -5.0252 10.4968 44 1 1.9101 -6.1873 5.1303 45 1 0.8485 -6.4995 3.6900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020384117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:55 Heat of formation + Delta-G solvation = -18.369963 kcal Electronic energy + Delta-G solvation = -21868.696895 eV Core-core repulsion = 18693.377678 eV Total energy + Delta-G solvation = -3175.319218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41767 -40.11028 -38.77739 -35.73884 -34.78510 -34.15995 -31.67874 -28.25597 -28.11143 -26.81326 -26.53083 -25.50693 -23.85801 -23.57906 -21.33500 -20.16624 -19.39686 -19.26083 -18.29516 -17.40672 -16.70766 -16.54050 -15.90295 -15.80963 -15.59984 -15.11063 -14.91128 -14.61417 -14.38550 -13.86345 -13.61235 -13.49646 -13.33115 -13.29924 -13.15222 -12.81680 -12.63996 -12.56193 -12.46111 -12.18975 -12.07027 -11.94399 -11.84626 -11.72454 -11.47943 -11.37841 -11.17651 -10.92992 -10.90776 -10.70424 -9.97661 -9.05184 -7.97498 -5.27577 1.45802 1.48326 1.49982 1.56750 2.19076 2.53926 2.86498 3.34349 3.59388 3.63784 3.75609 3.82014 3.84053 3.89300 4.00253 4.17934 4.27437 4.28311 4.32618 4.33468 4.61583 4.74736 4.79862 4.81615 4.83441 4.84276 4.95986 4.98095 5.01425 5.10181 5.13181 5.15181 5.20681 5.23534 5.24069 5.31545 5.40607 5.49514 5.50714 5.57259 5.68578 6.24943 6.63378 7.29223 7.32673 8.05429 8.26782 9.26210 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034825 B = 0.002856 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.837967 B = 9802.760819 C = 9989.294064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.116 4.116 6 H 0.082 0.918 7 C -0.137 4.137 8 C -0.183 4.183 9 H 0.153 0.847 10 C 0.529 3.471 11 O -0.598 6.598 12 N -0.697 5.697 13 C 0.130 3.870 14 H 0.065 0.935 15 C -0.171 4.171 16 C 0.151 3.849 17 H 0.079 0.921 18 N -0.724 5.724 19 C -0.244 4.244 20 H 0.083 0.917 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.978 3.022 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.267 1.267 27 C -0.136 4.136 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.419 0.581 40 H 0.107 0.893 41 H 0.031 0.969 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.060 0.940 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 5.669 -27.861 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.135 4.135 6 H 0.100 0.900 7 C -0.174 4.174 8 C -0.204 4.204 9 H 0.170 0.830 10 C 0.318 3.682 11 O -0.479 6.479 12 N -0.347 5.347 13 C 0.024 3.976 14 H 0.083 0.917 15 C -0.213 4.213 16 C 0.040 3.960 17 H 0.097 0.903 18 N -0.362 5.362 19 C -0.375 4.375 20 H 0.101 0.899 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.192 1.192 27 C -0.175 4.175 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.159 0.841 39 H 0.257 0.743 40 H 0.125 0.875 41 H 0.050 0.950 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.509 6.097 -27.105 27.895 hybrid contribution -0.251 0.017 1.516 1.537 sum 2.259 6.114 -25.589 26.406 Atomic orbital electron populations 1.21874 0.94391 1.02070 1.01525 1.20103 0.95390 0.95371 0.92721 1.21845 1.01314 0.94705 1.01802 1.22018 1.01620 1.00561 0.95879 1.22429 1.02260 0.89138 0.99666 0.90004 1.23299 0.89363 1.00476 1.04243 1.22283 1.02870 1.01517 0.93716 0.82953 1.20526 0.74931 0.81945 0.90843 1.90706 1.53982 1.56263 1.46954 1.45810 1.68919 1.11065 1.08934 1.22176 0.96587 0.95224 0.83579 0.91661 1.24184 0.96079 1.00271 1.00783 1.21251 0.96223 0.95652 0.82874 0.90291 1.42411 1.24282 1.68643 1.00860 1.19721 1.01269 1.29402 0.87138 0.89939 1.25673 0.99601 1.02184 0.99756 1.69843 1.26944 1.48576 1.16971 0.85076 0.78684 0.77160 0.78456 1.20986 1.22547 1.19197 1.23721 0.98880 0.93823 1.01110 0.94365 0.91200 0.92323 0.92202 0.91183 0.93891 0.91631 0.91545 0.91459 0.90003 0.84079 0.74332 0.87513 0.94985 0.79755 0.94031 0.92124 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.31 71.98 0.60 -1.50 16 2 C -0.04 -0.51 0.88 -52.18 -0.05 -0.55 16 3 C -0.14 -1.93 8.46 71.98 0.61 -1.32 16 4 C -0.14 -1.31 7.07 71.98 0.51 -0.80 16 5 C -0.12 -2.29 4.66 -10.79 -0.05 -2.34 16 6 H 0.08 2.22 7.64 -2.39 -0.02 2.20 16 7 C -0.14 -2.23 9.27 30.59 0.28 -1.94 16 8 C -0.18 -3.51 5.04 -11.54 -0.06 -3.57 16 9 H 0.15 1.93 7.07 -2.39 -0.02 1.91 16 10 C 0.53 15.67 7.61 87.66 0.67 16.34 16 11 O -0.60 -24.90 15.86 -3.05 -0.05 -24.94 16 12 N -0.70 -17.80 5.35 -440.02 -2.36 -20.16 16 13 C 0.13 4.40 4.13 45.52 0.19 4.58 16 14 H 0.07 2.88 7.46 -2.39 -0.02 2.86 16 15 C -0.17 -6.05 7.68 31.12 0.24 -5.81 16 16 C 0.15 5.84 4.55 45.52 0.21 6.05 16 17 H 0.08 2.87 8.11 -2.39 -0.02 2.85 16 18 N -0.72 -37.67 5.31 -320.44 -1.70 -39.38 16 19 C -0.24 -13.79 9.97 84.04 0.84 -12.95 16 20 H 0.08 4.40 7.83 -2.92 -0.02 4.37 16 21 C -0.08 -4.73 5.50 84.87 0.47 -4.27 16 22 N -0.97 -61.85 13.06 21.66 0.28 -61.57 16 23 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 27 C -0.14 -4.10 7.57 31.12 0.24 -3.86 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.82 7.29 -2.39 -0.02 0.81 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.50 7.07 -2.39 -0.02 0.48 16 35 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.07 0.54 6.97 -2.38 -0.02 0.53 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.14 1.39 5.85 -2.39 -0.01 1.37 16 39 H 0.42 6.88 8.73 -92.71 -0.81 6.07 16 40 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.37 21.17 7.90 -92.71 -0.73 20.44 16 43 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.13 2.64 8.12 -2.39 -0.02 2.62 16 Total: -1.00 -75.77 360.95 2.32 -73.44 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.57 Total: 35.44 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.69 Total: -11.96 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -3.78 Total: -121.11 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -75.77 2.32 -73.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020384117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.073 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds