Wall clock time and date at job start Tue Mar 31 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46932 * 2 1 4 4 H 1.08997 * 110.53554 * 307.61143 * 3 2 1 5 5 C 1.54966 * 110.53152 * 70.24019 * 3 2 1 6 6 C 1.54890 * 102.77717 * 156.56930 * 5 3 2 7 7 C 1.54270 * 104.19246 * 322.08265 * 6 5 3 8 8 C 1.53870 * 106.59879 * 23.61219 * 7 6 5 9 9 H 1.09000 * 110.03075 * 240.65989 * 8 7 6 10 10 C 1.50702 * 110.03365 * 119.28303 * 8 7 6 11 11 O 1.21283 * 120.00262 * 242.09212 * 10 8 7 12 12 N 1.34777 * 119.99928 * 61.81117 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09001 * 112.84905 * 23.81116 * 13 12 10 15 15 C 1.53781 * 113.61433 * 155.00089 * 13 12 10 16 16 C 1.53785 * 87.07861 * 139.98479 * 15 13 12 17 17 H 1.08998 * 113.61517 * 219.93252 * 16 15 13 18 18 N 1.46503 * 113.61631 * 89.11845 * 16 15 13 19 19 C 1.36939 * 120.00443 * 154.99903 * 18 16 15 20 20 H 1.08000 * 119.99669 * 359.97438 * 19 18 16 21 21 C 1.38801 * 120.00202 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00200 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00117 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47564 * 90.00001 * 23 21 19 25 25 H 1.48499 * 109.47138 * 210.00201 * 23 21 19 26 26 H 1.48498 * 109.47074 * 329.99668 * 23 21 19 27 27 C 1.53780 * 87.08273 * 334.56699 * 16 15 13 28 28 H 1.09005 * 109.47384 * 300.00093 * 1 2 3 29 29 H 1.08996 * 109.47204 * 60.00388 * 1 2 3 30 30 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08988 * 109.47685 * 239.99835 * 2 1 3 32 32 H 1.09008 * 109.46979 * 119.99337 * 2 1 3 33 33 H 1.09001 * 110.71976 * 38.25588 * 5 3 2 34 34 H 1.09005 * 110.92228 * 274.98027 * 5 3 2 35 35 H 1.08996 * 110.48255 * 203.40693 * 6 5 3 36 36 H 1.08996 * 110.48194 * 80.76126 * 6 5 3 37 37 H 1.08997 * 110.03154 * 264.32125 * 7 6 5 38 38 H 1.09006 * 110.06850 * 142.91950 * 7 6 5 39 39 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 40 40 H 1.08996 * 113.61616 * 254.52774 * 15 13 12 41 41 H 1.08990 * 113.61736 * 25.43826 * 15 13 12 42 42 H 0.97008 * 119.99626 * 334.99808 * 18 16 15 43 43 H 0.96996 * 120.00370 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.61656 * 270.88591 * 27 16 15 45 45 H 1.09004 * 113.61428 * 139.97892 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5801 2.0107 -0.8086 5 6 1.7585 2.1185 1.3658 6 6 2.8168 3.2485 1.4133 7 6 4.0711 2.6192 0.7725 8 6 3.5771 1.4718 -0.1259 9 1 3.9976 0.5249 0.2128 10 6 3.9730 1.7295 -1.5569 11 8 3.1191 1.8652 -2.4074 12 7 5.2760 1.8150 -1.8907 13 6 5.6608 2.0715 -3.2808 14 1 4.8776 2.5704 -3.8516 15 6 7.0431 2.7297 -3.4259 16 6 7.2676 1.8084 -4.6365 17 1 8.2788 1.4062 -4.6976 18 7 6.8057 2.3810 -5.9034 19 6 7.3609 1.9670 -7.0848 20 1 8.1396 1.2187 -7.0825 21 6 6.9228 2.5091 -8.2851 22 7 7.4561 2.1109 -9.4207 23 14 5.5764 3.8040 -8.2891 24 1 6.1873 5.1537 -8.1887 25 1 4.7985 3.7054 -9.5501 26 1 4.6730 3.5822 -7.1316 27 6 6.2574 0.8450 -3.9912 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.9092 1.4135 2.1833 34 1 0.7503 2.5320 1.3951 35 1 3.0196 3.5380 2.4443 36 1 2.4827 4.1086 0.8331 37 1 4.7306 2.2290 1.5477 38 1 4.5980 3.3621 0.1736 39 1 5.9591 1.7065 -1.2106 40 1 6.9979 3.7875 -3.6847 41 1 7.7138 2.5254 -2.5914 42 1 6.1065 3.0534 -5.9054 43 1 7.1503 2.4900 -10.2595 44 1 6.7133 0.1255 -3.3113 45 1 5.5780 0.3814 -4.7065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020554271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:04 Heat of formation + Delta-G solvation = -29.826805 kcal Electronic energy + Delta-G solvation = -22276.816413 eV Core-core repulsion = 19101.000389 eV Total energy + Delta-G solvation = -3175.816024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42631 -38.78542 -37.26448 -34.20070 -33.41850 -32.56069 -30.45527 -29.36343 -27.81001 -25.22445 -24.66596 -23.22990 -22.43821 -21.50220 -20.43563 -19.70837 -18.88191 -17.65070 -17.11571 -16.21965 -15.74692 -15.16987 -14.84511 -14.64811 -14.44526 -14.08313 -13.64689 -13.36863 -13.28121 -13.02302 -12.73720 -12.27043 -12.23873 -12.11812 -12.08491 -11.81847 -11.51615 -11.27508 -11.00943 -10.94831 -10.89469 -10.77352 -10.74382 -10.57553 -10.39220 -10.25498 -9.89932 -9.63496 -9.49862 -8.94745 -8.74998 -7.31240 -5.79587 -3.16305 2.72494 3.29139 3.38743 3.43518 3.46588 4.19445 4.32066 4.49349 4.58077 4.86428 4.88833 4.98247 5.01711 5.08530 5.10722 5.16376 5.21064 5.33561 5.37744 5.39088 5.42262 5.48594 5.59866 5.63565 5.69144 5.73245 5.76843 5.84425 5.91729 5.95788 5.99765 6.01143 6.10142 6.12974 6.25626 6.33427 6.51713 6.58644 6.69382 6.90672 7.63741 7.97000 8.35157 8.39756 9.17048 9.89575 10.07953 11.38300 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.003535 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.788503 B = 7917.999240 C = 8259.737841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.079 4.079 4 H 0.094 0.906 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.112 4.112 9 H 0.097 0.903 10 C 0.514 3.486 11 O -0.538 6.538 12 N -0.718 5.718 13 C 0.122 3.878 14 H 0.109 0.891 15 C -0.165 4.165 16 C 0.177 3.823 17 H 0.077 0.923 18 N -0.730 5.730 19 C -0.249 4.249 20 H 0.093 0.907 21 C 0.008 3.992 22 N -0.931 5.931 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.275 1.275 27 C -0.182 4.182 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.396 0.604 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.073 0.927 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -0.969 26.284 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.113 0.887 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.133 4.133 9 H 0.115 0.885 10 C 0.300 3.700 11 O -0.414 6.414 12 N -0.368 5.368 13 C 0.018 3.982 14 H 0.127 0.873 15 C -0.205 4.205 16 C 0.064 3.936 17 H 0.095 0.905 18 N -0.370 5.370 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.578 5.578 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.201 1.201 27 C -0.224 4.224 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.230 0.770 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.196 0.804 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.873 -0.966 25.421 26.942 hybrid contribution -0.593 0.779 0.176 0.994 sum -9.465 -0.188 25.597 27.292 Atomic orbital electron populations 1.21752 0.95757 1.01402 1.01866 1.21533 0.96135 0.95835 1.01726 1.22002 0.92536 0.96930 0.98328 0.88737 1.22594 0.98855 0.97273 0.96923 1.22342 0.95047 0.98300 1.00505 1.22134 0.98243 0.96732 0.98295 1.22053 0.98179 1.00614 0.92501 0.88505 1.20610 0.82704 0.76093 0.90544 1.90699 1.49833 1.49492 1.51417 1.46117 1.07026 1.72853 1.10819 1.22634 0.96224 0.98299 0.81088 0.87342 1.23908 0.95652 1.00777 1.00187 1.20862 0.96243 0.91978 0.84496 0.90510 1.42551 1.44787 1.47857 1.01794 1.19092 1.16556 1.19552 0.82642 0.88954 1.24665 0.99313 0.99656 0.95190 1.69696 1.45076 1.46057 0.97018 0.86596 0.82688 0.82449 0.77165 1.20943 1.21549 1.20133 1.24271 1.01094 0.97316 0.99753 0.92824 0.92536 0.92971 0.91852 0.92243 0.91449 0.91410 0.91480 0.91488 0.90974 0.91255 0.76989 0.91032 0.89897 0.80387 0.92948 0.90872 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.79 37.16 0.36 -0.93 16 2 C -0.11 -1.07 5.28 -26.73 -0.14 -1.21 16 3 C -0.08 -0.79 2.18 -88.92 -0.19 -0.98 16 4 H 0.09 1.21 6.89 -51.93 -0.36 0.85 16 5 C -0.12 -0.91 5.68 -24.70 -0.14 -1.06 16 6 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 7 C -0.12 -0.91 6.38 -25.61 -0.16 -1.07 16 8 C -0.11 -1.08 2.87 -90.66 -0.26 -1.34 16 9 H 0.10 0.79 7.84 -51.93 -0.41 0.39 16 10 C 0.51 7.04 6.93 -10.98 -0.08 6.96 16 11 O -0.54 -9.85 15.01 5.55 0.08 -9.76 16 12 N -0.72 -8.91 5.21 -53.02 -0.28 -9.19 16 13 C 0.12 1.91 4.12 -67.12 -0.28 1.63 16 14 H 0.11 2.06 7.46 -51.93 -0.39 1.67 16 15 C -0.17 -2.44 7.58 -25.92 -0.20 -2.63 16 16 C 0.18 3.31 4.56 -67.12 -0.31 3.01 16 17 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 18 N -0.73 -17.34 5.11 -52.64 -0.27 -17.61 16 19 C -0.25 -7.03 10.45 -15.06 -0.16 -7.19 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 21 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 23 Si 0.88 22.51 27.74 -169.99 -4.71 17.80 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 27 C -0.18 -3.09 7.68 -25.92 -0.20 -3.29 16 28 H 0.05 0.40 7.56 -51.93 -0.39 0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.69 8.14 -51.94 -0.42 0.27 16 32 H 0.06 0.47 8.02 -51.92 -0.42 0.05 16 33 H 0.07 0.45 7.97 -51.93 -0.41 0.04 16 34 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.60 7.60 -51.93 -0.39 0.20 16 39 H 0.40 3.62 8.71 -40.82 -0.36 3.26 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 0.97 8.12 -51.93 -0.42 0.54 16 42 H 0.36 8.61 5.76 -40.82 -0.24 8.38 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -33.06 355.31 -9.08 -42.14 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.02 Total: 8.94 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.01 Total: -9.06 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.23 Total: -55.40 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.06 -9.08 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020554271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.315 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds