Wall clock time and date at job start Tue Mar 31 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46932 * 2 1 4 4 H 1.08997 * 110.53554 * 307.61143 * 3 2 1 5 5 C 1.54966 * 110.53152 * 70.24019 * 3 2 1 6 6 C 1.54890 * 102.77717 * 156.56930 * 5 3 2 7 7 C 1.54270 * 104.19246 * 322.08265 * 6 5 3 8 8 C 1.53870 * 106.59879 * 23.61219 * 7 6 5 9 9 H 1.09000 * 110.03075 * 240.65989 * 8 7 6 10 10 C 1.50702 * 110.03365 * 119.28303 * 8 7 6 11 11 O 1.21283 * 120.00262 * 242.09212 * 10 8 7 12 12 N 1.34777 * 119.99928 * 61.81117 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09001 * 112.84905 * 23.81116 * 13 12 10 15 15 C 1.53781 * 113.61433 * 155.00089 * 13 12 10 16 16 C 1.53785 * 87.07861 * 139.98479 * 15 13 12 17 17 H 1.08998 * 113.61517 * 219.93252 * 16 15 13 18 18 N 1.46503 * 113.61631 * 89.11845 * 16 15 13 19 19 C 1.36939 * 120.00443 * 154.99903 * 18 16 15 20 20 H 1.08000 * 119.99669 * 359.97438 * 19 18 16 21 21 C 1.38801 * 120.00202 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00200 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00117 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47564 * 90.00001 * 23 21 19 25 25 H 1.48499 * 109.47138 * 210.00201 * 23 21 19 26 26 H 1.48498 * 109.47074 * 329.99668 * 23 21 19 27 27 C 1.53780 * 87.08273 * 334.56699 * 16 15 13 28 28 H 1.09005 * 109.47384 * 300.00093 * 1 2 3 29 29 H 1.08996 * 109.47204 * 60.00388 * 1 2 3 30 30 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08988 * 109.47685 * 239.99835 * 2 1 3 32 32 H 1.09008 * 109.46979 * 119.99337 * 2 1 3 33 33 H 1.09001 * 110.71976 * 38.25588 * 5 3 2 34 34 H 1.09005 * 110.92228 * 274.98027 * 5 3 2 35 35 H 1.08996 * 110.48255 * 203.40693 * 6 5 3 36 36 H 1.08996 * 110.48194 * 80.76126 * 6 5 3 37 37 H 1.08997 * 110.03154 * 264.32125 * 7 6 5 38 38 H 1.09006 * 110.06850 * 142.91950 * 7 6 5 39 39 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 40 40 H 1.08996 * 113.61616 * 254.52774 * 15 13 12 41 41 H 1.08990 * 113.61736 * 25.43826 * 15 13 12 42 42 H 0.97008 * 119.99626 * 334.99808 * 18 16 15 43 43 H 0.96996 * 120.00370 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.61656 * 270.88591 * 27 16 15 45 45 H 1.09004 * 113.61428 * 139.97892 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5801 2.0107 -0.8086 5 6 1.7585 2.1185 1.3658 6 6 2.8168 3.2485 1.4133 7 6 4.0711 2.6192 0.7725 8 6 3.5771 1.4718 -0.1259 9 1 3.9976 0.5249 0.2128 10 6 3.9730 1.7295 -1.5569 11 8 3.1191 1.8652 -2.4074 12 7 5.2760 1.8150 -1.8907 13 6 5.6608 2.0715 -3.2808 14 1 4.8776 2.5704 -3.8516 15 6 7.0431 2.7297 -3.4259 16 6 7.2676 1.8084 -4.6365 17 1 8.2788 1.4062 -4.6976 18 7 6.8057 2.3810 -5.9034 19 6 7.3609 1.9670 -7.0848 20 1 8.1396 1.2187 -7.0825 21 6 6.9228 2.5091 -8.2851 22 7 7.4561 2.1109 -9.4207 23 14 5.5764 3.8040 -8.2891 24 1 6.1873 5.1537 -8.1887 25 1 4.7985 3.7054 -9.5501 26 1 4.6730 3.5822 -7.1316 27 6 6.2574 0.8450 -3.9912 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.9092 1.4135 2.1833 34 1 0.7503 2.5320 1.3951 35 1 3.0196 3.5380 2.4443 36 1 2.4827 4.1086 0.8331 37 1 4.7306 2.2290 1.5477 38 1 4.5980 3.3621 0.1736 39 1 5.9591 1.7065 -1.2106 40 1 6.9979 3.7875 -3.6847 41 1 7.7138 2.5254 -2.5914 42 1 6.1065 3.0534 -5.9054 43 1 7.1503 2.4900 -10.2595 44 1 6.7133 0.1255 -3.3113 45 1 5.5780 0.3814 -4.7065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020554271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:03 Heat of formation + Delta-G solvation = -51.807897 kcal Electronic energy + Delta-G solvation = -22277.769584 eV Core-core repulsion = 19101.000389 eV Total energy + Delta-G solvation = -3176.769196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47483 -39.99660 -38.29559 -35.83288 -34.50918 -33.85471 -32.36127 -30.21110 -28.46858 -26.55896 -26.27545 -24.60183 -23.62948 -22.41034 -21.20903 -20.75143 -20.28689 -19.57932 -18.10603 -17.52385 -16.61248 -16.54199 -16.19245 -15.94320 -15.37765 -15.33564 -14.79659 -14.71099 -14.57251 -14.04226 -13.91892 -13.86133 -13.70196 -13.34122 -12.92653 -12.86967 -12.64165 -12.53119 -12.27170 -12.16002 -11.90961 -11.86411 -11.79950 -11.66841 -11.51837 -11.46390 -11.33265 -11.26175 -10.97101 -10.63781 -9.97379 -9.34745 -8.07337 -5.40579 1.33441 1.35991 1.42142 1.66170 2.25590 2.42884 3.22621 3.46018 3.47553 3.63485 3.67358 3.77688 3.82869 4.11885 4.21697 4.23292 4.27637 4.33357 4.44721 4.51158 4.67268 4.70905 4.72986 4.78864 4.81583 4.84143 4.95547 4.97053 5.03914 5.08423 5.12289 5.19416 5.22736 5.24235 5.27807 5.29693 5.40766 5.44188 5.57826 5.64989 5.76181 6.18517 6.64212 7.02689 7.33862 7.79901 7.95992 9.13986 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.003535 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.788503 B = 7917.999240 C = 8259.737841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.084 4.084 4 H 0.056 0.944 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.112 4.112 8 C -0.105 4.105 9 H 0.122 0.878 10 C 0.508 3.492 11 O -0.593 6.593 12 N -0.702 5.702 13 C 0.127 3.873 14 H 0.071 0.929 15 C -0.136 4.136 16 C 0.152 3.848 17 H 0.078 0.922 18 N -0.738 5.738 19 C -0.232 4.232 20 H 0.065 0.935 21 C -0.059 4.059 22 N -0.980 5.980 23 Si 0.947 3.053 24 H -0.272 1.272 25 H -0.294 1.294 26 H -0.266 1.266 27 C -0.172 4.172 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.418 0.582 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.363 0.637 43 H 0.259 0.741 44 H 0.106 0.894 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 -0.621 30.532 31.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.103 4.103 4 H 0.074 0.926 5 C -0.149 4.149 6 C -0.163 4.163 7 C -0.149 4.149 8 C -0.126 4.126 9 H 0.140 0.860 10 C 0.296 3.704 11 O -0.473 6.473 12 N -0.353 5.353 13 C 0.021 3.979 14 H 0.089 0.911 15 C -0.176 4.176 16 C 0.042 3.958 17 H 0.096 0.904 18 N -0.379 5.379 19 C -0.362 4.362 20 H 0.083 0.917 21 C -0.251 4.251 22 N -0.630 5.630 23 Si 0.775 3.225 24 H -0.198 1.198 25 H -0.221 1.221 26 H -0.191 1.191 27 C -0.214 4.214 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.196 0.804 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.639 -0.624 29.771 31.005 hybrid contribution -0.624 0.569 -1.090 1.378 sum -9.263 -0.055 28.681 30.140 Atomic orbital electron populations 1.21750 0.95495 1.01841 1.01643 1.21529 0.96456 0.95433 1.01621 1.21975 0.92718 0.96989 0.98588 0.92568 1.22569 0.99042 0.97488 0.95801 1.22368 0.94843 0.97633 1.01470 1.22172 0.98646 0.95690 0.98431 1.22119 0.98022 1.02650 0.89795 0.86040 1.21431 0.82309 0.74726 0.91890 1.90687 1.51370 1.51862 1.53369 1.45892 1.07442 1.72080 1.09868 1.22227 0.95844 0.97312 0.82483 0.91056 1.23747 0.95196 0.99594 0.99015 1.21218 0.96485 0.94079 0.84045 0.90398 1.42577 1.44845 1.48246 1.02276 1.19104 1.14982 1.17742 0.84417 0.91684 1.25412 1.02238 1.02535 0.94921 1.69855 1.47321 1.48212 0.97661 0.85525 0.79864 0.80100 0.76991 1.19751 1.22103 1.19093 1.24171 0.99829 0.97894 0.99531 0.91321 0.94495 0.92195 0.94263 0.89838 0.89374 0.91438 0.89311 0.93147 0.87855 0.92079 0.74434 0.91237 0.85333 0.80409 0.93241 0.87546 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.79 71.98 0.70 -1.75 16 2 C -0.11 -1.95 5.28 30.60 0.16 -1.79 16 3 C -0.08 -1.57 2.18 -9.69 -0.02 -1.59 16 4 H 0.06 1.50 6.89 -2.39 -0.02 1.49 16 5 C -0.11 -1.41 5.68 31.91 0.18 -1.23 16 6 C -0.13 -1.53 6.83 31.67 0.22 -1.31 16 7 C -0.11 -1.33 6.38 31.32 0.20 -1.13 16 8 C -0.10 -1.77 2.87 -10.82 -0.03 -1.80 16 9 H 0.12 1.49 7.84 -2.39 -0.02 1.47 16 10 C 0.51 13.39 6.93 87.66 0.61 13.99 16 11 O -0.59 -22.38 15.01 -3.04 -0.05 -22.42 16 12 N -0.70 -15.70 5.21 -440.03 -2.29 -17.99 16 13 C 0.13 3.81 4.12 45.52 0.19 4.00 16 14 H 0.07 2.74 7.46 -2.39 -0.02 2.72 16 15 C -0.14 -3.61 7.58 31.12 0.24 -3.37 16 16 C 0.15 5.52 4.56 45.52 0.21 5.73 16 17 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 18 N -0.74 -35.21 5.11 -320.45 -1.64 -36.85 16 19 C -0.23 -13.39 10.45 84.03 0.88 -12.51 16 20 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 21 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 22 N -0.98 -63.78 13.97 21.65 0.30 -63.47 16 23 Si 0.95 47.55 27.74 68.60 1.90 49.46 16 24 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 26 H -0.27 -12.71 6.52 99.48 0.65 -12.07 16 27 C -0.17 -5.66 7.68 31.12 0.24 -5.43 16 28 H 0.07 0.90 7.56 -2.38 -0.02 0.89 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.04 8.02 -2.38 -0.02 1.02 16 33 H 0.09 0.79 7.97 -2.39 -0.02 0.77 16 34 H 0.07 0.86 8.06 -2.38 -0.02 0.85 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.85 7.60 -2.38 -0.02 0.84 16 39 H 0.42 5.80 8.71 -92.71 -0.81 4.99 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.13 2.29 8.12 -2.39 -0.02 2.27 16 42 H 0.36 17.18 5.76 -92.70 -0.53 16.64 16 43 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 44 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -76.63 355.31 2.03 -74.60 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.43 Total: 27.98 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.23 Total: -11.30 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.63 Total: -118.31 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.90 Total: 49.46 kcal Total: -76.63 2.03 -74.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020554271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.794 kcal (2) G-P(sol) polarization free energy of solvation -76.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds