Wall clock time and date at job start Tue Mar 31 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47515 * 2 1 4 4 H 1.08994 * 110.05701 * 306.37396 * 3 2 1 5 5 C 1.54268 * 110.03245 * 67.78749 * 3 2 1 6 6 C 1.55238 * 104.23372 * 142.89497 * 5 3 2 7 7 C 1.54890 * 102.58884 * 322.08670 * 6 5 3 8 8 C 1.53877 * 110.03416 * 184.95539 * 3 2 1 9 9 H 1.08997 * 110.03204 * 121.42874 * 8 3 2 10 10 C 1.50694 * 110.07144 * 0.02562 * 8 3 2 11 11 O 1.21276 * 120.00636 * 275.02054 * 10 8 3 12 12 N 1.34780 * 119.99737 * 95.01801 * 10 8 3 13 13 C 1.46504 * 119.99928 * 179.97438 * 12 10 8 14 14 H 1.08993 * 112.84794 * 23.81157 * 13 12 10 15 15 C 1.53787 * 113.61269 * 155.00507 * 13 12 10 16 16 C 1.53775 * 87.07934 * 139.98157 * 15 13 12 17 17 H 1.09003 * 113.61051 * 220.01750 * 16 15 13 18 18 N 1.46501 * 113.61547 * 89.11722 * 16 15 13 19 19 C 1.36930 * 120.00397 * 154.99464 * 18 16 15 20 20 H 1.08004 * 120.00204 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00456 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99905 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47145 * 60.00467 * 23 21 19 25 25 H 1.48501 * 109.46660 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46937 * 300.00009 * 23 21 19 27 27 C 1.53775 * 87.08536 * 334.56589 * 16 15 13 28 28 H 1.09003 * 109.47198 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47165 * 59.99403 * 1 2 3 30 30 H 1.08996 * 109.47632 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47198 * 239.99868 * 2 1 3 32 32 H 1.09004 * 109.46543 * 120.00212 * 2 1 3 33 33 H 1.08998 * 110.49173 * 261.57614 * 5 3 2 34 34 H 1.09004 * 110.48614 * 24.21903 * 5 3 2 35 35 H 1.08997 * 110.89877 * 203.79741 * 6 5 3 36 36 H 1.09004 * 110.76629 * 80.31421 * 6 5 3 37 37 H 1.09000 * 110.48686 * 279.18981 * 7 6 5 38 38 H 1.08993 * 110.48975 * 156.67179 * 7 6 5 39 39 H 0.97002 * 120.00466 * 0.02562 * 12 10 8 40 40 H 1.09006 * 113.60902 * 254.53305 * 15 13 12 41 41 H 1.09003 * 113.61209 * 25.34605 * 15 13 12 42 42 H 0.97003 * 120.00001 * 334.99988 * 18 16 15 43 43 H 0.96991 * 120.00325 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.61791 * 270.88414 * 27 16 15 45 45 H 1.09003 * 113.61654 * 139.98071 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5923 1.9973 -0.8244 5 6 1.6997 2.1233 1.3418 6 6 2.9302 3.0227 1.6364 7 6 4.1117 2.1497 1.1454 8 6 3.5737 1.4592 -0.1249 9 1 3.8701 2.0222 -1.0099 10 6 4.1012 0.0502 -0.2094 11 8 4.3129 -0.5800 0.8050 12 7 4.3376 -0.5098 -1.4123 13 6 4.8510 -1.8795 -1.4945 14 1 4.6192 -2.4722 -0.6096 15 6 4.5095 -2.5871 -2.8165 16 6 5.9293 -3.1765 -2.7766 17 1 6.4179 -3.2044 -3.7506 18 7 6.0159 -4.4504 -2.0584 19 6 7.0210 -5.3336 -2.3495 20 1 7.7503 -5.0909 -3.1083 21 6 7.1034 -6.5404 -1.6686 22 7 6.2150 -6.8361 -0.7435 23 14 8.4751 -7.7449 -2.0652 24 1 9.7885 -7.1001 -1.8123 25 1 8.3404 -8.9486 -1.2060 26 1 8.3861 -8.1438 -3.4928 27 6 6.3256 -1.9601 -1.9234 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 0.7991 2.7295 1.2444 34 1 1.5758 1.3778 2.1273 35 1 3.0171 3.2253 2.7038 36 1 2.8746 3.9518 1.0690 37 1 4.3773 1.4084 1.8991 38 1 4.9727 2.7733 0.9050 39 1 4.1686 -0.0058 -2.2237 40 1 3.7230 -3.3357 -2.7206 41 1 4.3428 -1.9021 -3.6479 42 1 5.3611 -4.6684 -1.3767 43 1 6.2723 -7.6795 -0.2680 44 1 6.6568 -1.1039 -2.5109 45 1 7.0053 -2.2025 -1.1065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020554274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:15 Heat of formation + Delta-G solvation = -30.101900 kcal Electronic energy + Delta-G solvation = -22500.437641 eV Core-core repulsion = 19324.609688 eV Total energy + Delta-G solvation = -3175.827953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49721 -38.63449 -37.03535 -33.99608 -33.25638 -32.58648 -29.97215 -29.12260 -27.73083 -25.08025 -24.49637 -23.20705 -22.73559 -21.31951 -20.70420 -19.44326 -18.42220 -17.36253 -16.79815 -16.17923 -15.79758 -14.88155 -14.83013 -14.74741 -14.36501 -13.97660 -13.59786 -13.36682 -13.11478 -12.76931 -12.59424 -12.23400 -12.08151 -11.92879 -11.72868 -11.53836 -11.39015 -11.18253 -10.98650 -10.85636 -10.81342 -10.75647 -10.64061 -10.55497 -10.23217 -10.14768 -9.84413 -9.69182 -9.37962 -8.89206 -8.61138 -6.99052 -5.77652 -3.07718 2.83278 3.41647 3.44523 3.48658 3.50033 4.31680 4.40673 4.52121 4.57488 4.95736 5.04998 5.06632 5.14975 5.19865 5.26219 5.30740 5.37573 5.41357 5.43015 5.47633 5.50237 5.55643 5.68108 5.73172 5.88277 5.89943 5.91203 5.98210 6.01896 6.05819 6.11431 6.15819 6.23385 6.26774 6.32269 6.41981 6.66710 6.76064 6.82926 7.07561 7.69650 7.76698 8.40546 8.47942 9.51145 10.07764 10.41803 11.44506 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.003361 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.998383 B = 8329.252526 C = 8493.174473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.112 4.112 9 H 0.086 0.914 10 C 0.521 3.479 11 O -0.537 6.537 12 N -0.720 5.720 13 C 0.126 3.874 14 H 0.112 0.888 15 C -0.164 4.164 16 C 0.171 3.829 17 H 0.067 0.933 18 N -0.705 5.705 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.184 4.184 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.394 0.606 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 21.152 -0.669 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.152 4.152 8 C -0.134 4.134 9 H 0.104 0.896 10 C 0.308 3.692 11 O -0.414 6.414 12 N -0.370 5.370 13 C 0.022 3.978 14 H 0.130 0.870 15 C -0.204 4.204 16 C 0.058 3.942 17 H 0.085 0.915 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.226 4.226 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.228 0.772 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.220 0.780 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.841 20.519 0.016 22.757 hybrid contribution 0.485 -0.452 -0.422 0.786 sum -9.357 20.067 -0.406 22.145 Atomic orbital electron populations 1.21750 0.95714 1.01684 1.01415 1.21862 0.96117 0.95670 1.03339 1.21695 0.92264 0.96856 0.98521 0.90493 1.22509 0.97666 0.98508 0.96818 1.22539 0.94724 0.97849 1.00968 1.22364 0.97588 0.98812 0.96416 1.22055 0.96738 0.93859 1.00709 0.89573 1.20403 0.76681 0.88454 0.83710 1.90703 1.51913 1.63862 1.34925 1.46234 1.66736 1.16236 1.07783 1.22598 0.94863 0.81298 0.99057 0.87016 1.23890 1.00757 0.99667 0.96118 1.20908 0.92595 0.85903 0.94774 0.91473 1.42181 1.33432 1.14602 1.44142 1.19228 1.04793 0.96739 1.16971 0.91001 1.24779 0.98956 0.98223 0.98758 1.69654 1.36671 1.24441 1.27025 0.86239 0.81659 0.80647 0.77450 1.21186 1.21658 1.21202 1.24305 0.96000 1.00538 1.01795 0.92759 0.93026 0.92718 0.91533 0.90713 0.91677 0.91108 0.91356 0.91625 0.89534 0.91594 0.77219 0.90982 0.90427 0.77979 0.93318 0.91377 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.77 37.16 0.36 -1.02 16 2 C -0.13 -1.48 4.12 -26.73 -0.11 -1.59 16 3 C -0.07 -0.70 2.93 -89.50 -0.26 -0.96 16 4 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.12 -1.02 5.54 -24.88 -0.14 -1.16 16 6 C -0.12 -1.02 6.93 -24.55 -0.17 -1.19 16 7 C -0.11 -1.19 6.30 -25.07 -0.16 -1.34 16 8 C -0.11 -1.17 3.29 -90.65 -0.30 -1.46 16 9 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 10 C 0.52 7.44 4.67 -10.99 -0.05 7.38 16 11 O -0.54 -10.12 14.57 5.56 0.08 -10.04 16 12 N -0.72 -9.50 4.89 -53.01 -0.26 -9.76 16 13 C 0.13 2.10 4.12 -67.11 -0.28 1.82 16 14 H 0.11 2.28 7.46 -51.93 -0.39 1.89 16 15 C -0.16 -2.62 7.58 -25.92 -0.20 -2.81 16 16 C 0.17 3.38 4.56 -67.12 -0.31 3.07 16 17 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 18 N -0.71 -17.84 5.31 -52.64 -0.28 -18.12 16 19 C -0.25 -6.88 9.97 -15.06 -0.15 -7.03 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C -0.18 -3.29 7.68 -25.92 -0.20 -3.49 16 28 H 0.05 0.46 7.51 -51.93 -0.39 0.07 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.80 6.88 -51.93 -0.36 0.44 16 32 H 0.07 1.04 7.05 -51.93 -0.37 0.68 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 1.13 6.91 -51.93 -0.36 0.77 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.39 3.94 8.72 -40.82 -0.36 3.58 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 42 H 0.39 10.46 7.90 -40.82 -0.32 10.14 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -31.93 353.77 -9.45 -41.38 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.98 Total: 11.63 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.05 Total: -10.19 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.19 Total: -55.59 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.93 -9.45 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020554274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.280 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds