Wall clock time and date at job start Tue Mar 31 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47515 * 2 1 4 4 H 1.08994 * 110.05701 * 306.37396 * 3 2 1 5 5 C 1.54268 * 110.03245 * 67.78749 * 3 2 1 6 6 C 1.55238 * 104.23372 * 142.89497 * 5 3 2 7 7 C 1.54890 * 102.58884 * 322.08670 * 6 5 3 8 8 C 1.53877 * 110.03416 * 184.95539 * 3 2 1 9 9 H 1.08997 * 110.03204 * 121.42874 * 8 3 2 10 10 C 1.50694 * 110.07144 * 0.02562 * 8 3 2 11 11 O 1.21276 * 120.00636 * 275.02054 * 10 8 3 12 12 N 1.34780 * 119.99737 * 95.01801 * 10 8 3 13 13 C 1.46504 * 119.99928 * 179.97438 * 12 10 8 14 14 H 1.08993 * 112.84794 * 23.81157 * 13 12 10 15 15 C 1.53787 * 113.61269 * 155.00507 * 13 12 10 16 16 C 1.53775 * 87.07934 * 139.98157 * 15 13 12 17 17 H 1.09003 * 113.61051 * 220.01750 * 16 15 13 18 18 N 1.46501 * 113.61547 * 89.11722 * 16 15 13 19 19 C 1.36930 * 120.00397 * 154.99464 * 18 16 15 20 20 H 1.08004 * 120.00204 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00456 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99905 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47145 * 60.00467 * 23 21 19 25 25 H 1.48501 * 109.46660 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46937 * 300.00009 * 23 21 19 27 27 C 1.53775 * 87.08536 * 334.56589 * 16 15 13 28 28 H 1.09003 * 109.47198 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47165 * 59.99403 * 1 2 3 30 30 H 1.08996 * 109.47632 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47198 * 239.99868 * 2 1 3 32 32 H 1.09004 * 109.46543 * 120.00212 * 2 1 3 33 33 H 1.08998 * 110.49173 * 261.57614 * 5 3 2 34 34 H 1.09004 * 110.48614 * 24.21903 * 5 3 2 35 35 H 1.08997 * 110.89877 * 203.79741 * 6 5 3 36 36 H 1.09004 * 110.76629 * 80.31421 * 6 5 3 37 37 H 1.09000 * 110.48686 * 279.18981 * 7 6 5 38 38 H 1.08993 * 110.48975 * 156.67179 * 7 6 5 39 39 H 0.97002 * 120.00466 * 0.02562 * 12 10 8 40 40 H 1.09006 * 113.60902 * 254.53305 * 15 13 12 41 41 H 1.09003 * 113.61209 * 25.34605 * 15 13 12 42 42 H 0.97003 * 120.00001 * 334.99988 * 18 16 15 43 43 H 0.96991 * 120.00325 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.61791 * 270.88414 * 27 16 15 45 45 H 1.09003 * 113.61654 * 139.98071 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5923 1.9973 -0.8244 5 6 1.6997 2.1233 1.3418 6 6 2.9302 3.0227 1.6364 7 6 4.1117 2.1497 1.1454 8 6 3.5737 1.4592 -0.1249 9 1 3.8701 2.0222 -1.0099 10 6 4.1012 0.0502 -0.2094 11 8 4.3129 -0.5800 0.8050 12 7 4.3376 -0.5098 -1.4123 13 6 4.8510 -1.8795 -1.4945 14 1 4.6192 -2.4722 -0.6096 15 6 4.5095 -2.5871 -2.8165 16 6 5.9293 -3.1765 -2.7766 17 1 6.4179 -3.2044 -3.7506 18 7 6.0159 -4.4504 -2.0584 19 6 7.0210 -5.3336 -2.3495 20 1 7.7503 -5.0909 -3.1083 21 6 7.1034 -6.5404 -1.6686 22 7 6.2150 -6.8361 -0.7435 23 14 8.4751 -7.7449 -2.0652 24 1 9.7885 -7.1001 -1.8123 25 1 8.3404 -8.9486 -1.2060 26 1 8.3861 -8.1438 -3.4928 27 6 6.3256 -1.9601 -1.9234 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 0.7991 2.7295 1.2444 34 1 1.5758 1.3778 2.1273 35 1 3.0171 3.2253 2.7038 36 1 2.8746 3.9518 1.0690 37 1 4.3773 1.4084 1.8991 38 1 4.9727 2.7733 0.9050 39 1 4.1686 -0.0058 -2.2237 40 1 3.7230 -3.3357 -2.7206 41 1 4.3428 -1.9021 -3.6479 42 1 5.3611 -4.6684 -1.3767 43 1 6.2723 -7.6795 -0.2680 44 1 6.6568 -1.1039 -2.5109 45 1 7.0053 -2.2025 -1.1065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020554274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:14 Heat of formation + Delta-G solvation = -50.996433 kcal Electronic energy + Delta-G solvation = -22501.343695 eV Core-core repulsion = 19324.609688 eV Total energy + Delta-G solvation = -3176.734008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59338 -39.95512 -38.14844 -35.72207 -34.28896 -33.99577 -31.77853 -30.15095 -28.48020 -26.52994 -26.28105 -24.72647 -23.71067 -22.47368 -21.46753 -20.65086 -19.75264 -19.34500 -17.85561 -17.35690 -16.88009 -16.63287 -15.93457 -15.80584 -15.64566 -15.30628 -15.06572 -14.61260 -14.34661 -14.14579 -13.71981 -13.42077 -13.37471 -13.25243 -12.98948 -12.77194 -12.63965 -12.46438 -12.23479 -12.19904 -11.87339 -11.83137 -11.79044 -11.71678 -11.49478 -11.45519 -11.34700 -11.29016 -10.89982 -10.58826 -9.91034 -9.04633 -7.96937 -5.27094 1.45840 1.49802 1.55795 1.70529 2.29752 2.54331 3.34799 3.51503 3.63440 3.64374 3.72947 3.84252 3.90212 4.10722 4.21519 4.29703 4.32112 4.39773 4.42742 4.54729 4.61964 4.68320 4.78367 4.79058 4.80300 4.82152 4.89125 4.99597 5.05491 5.13643 5.14646 5.19198 5.23162 5.25325 5.27509 5.33252 5.38370 5.45400 5.49870 5.56101 5.72139 6.25189 6.69295 7.29514 7.39730 8.05877 8.27342 9.26500 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.003361 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.998383 B = 8329.252526 C = 8493.174473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C -0.070 4.070 4 H 0.110 0.890 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.106 4.106 9 H 0.123 0.877 10 C 0.516 3.484 11 O -0.593 6.593 12 N -0.704 5.704 13 C 0.133 3.867 14 H 0.064 0.936 15 C -0.137 4.137 16 C 0.150 3.850 17 H 0.079 0.921 18 N -0.723 5.723 19 C -0.246 4.246 20 H 0.083 0.917 21 C -0.079 4.079 22 N -0.973 5.973 23 Si 0.978 3.022 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.272 1.272 27 C -0.171 4.171 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.416 0.584 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.106 0.894 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 24.339 -3.294 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.088 4.088 4 H 0.128 0.872 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.127 4.127 9 H 0.141 0.859 10 C 0.305 3.695 11 O -0.473 6.473 12 N -0.355 5.355 13 C 0.027 3.973 14 H 0.082 0.918 15 C -0.177 4.177 16 C 0.039 3.961 17 H 0.097 0.903 18 N -0.361 5.361 19 C -0.378 4.378 20 H 0.100 0.900 21 C -0.270 4.270 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.198 1.198 27 C -0.213 4.213 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.254 0.746 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.124 0.876 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.343 23.784 -2.682 26.074 hybrid contribution 0.639 -1.374 0.402 1.568 sum -9.704 22.410 -2.281 24.527 Atomic orbital electron populations 1.21722 0.94142 1.01476 1.02796 1.21800 0.97525 0.96767 1.00790 1.21765 0.91339 0.95666 1.00061 0.87166 1.22521 0.98984 0.98306 0.95772 1.22534 0.93076 0.98200 1.01455 1.22381 0.99247 0.98479 0.95613 1.22168 0.97389 0.90963 1.02201 0.85854 1.21226 0.75537 0.89830 0.82907 1.90693 1.54125 1.65563 1.36944 1.45996 1.65983 1.14804 1.08733 1.22098 0.94495 0.82883 0.97806 0.91798 1.23725 0.97595 0.99447 0.96889 1.21257 0.95750 0.84309 0.94771 0.90345 1.42389 1.32695 1.16482 1.44537 1.19699 1.04971 0.96962 1.16171 0.89961 1.25659 1.01692 1.00448 0.99250 1.69837 1.38964 1.24734 1.28760 0.85151 0.78803 0.77928 0.77514 1.20431 1.22392 1.19822 1.24174 0.95812 1.00818 1.00457 0.92005 0.90890 0.93841 0.92598 0.94827 0.89304 0.93469 0.91318 0.88993 0.93404 0.90225 0.74581 0.92338 0.85568 0.79792 0.94036 0.87574 0.95060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.77 71.98 0.70 -1.80 16 2 C -0.13 -2.88 4.12 30.59 0.13 -2.75 16 3 C -0.07 -1.12 2.93 -10.07 -0.03 -1.15 16 4 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 5 C -0.12 -1.81 5.54 31.79 0.18 -1.64 16 6 C -0.12 -1.63 6.93 32.01 0.22 -1.40 16 7 C -0.12 -2.34 6.30 31.67 0.20 -2.14 16 8 C -0.11 -1.96 3.29 -10.81 -0.04 -2.00 16 9 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 10 C 0.52 14.67 4.67 87.65 0.41 15.08 16 11 O -0.59 -23.89 14.57 -3.02 -0.04 -23.93 16 12 N -0.70 -17.52 4.89 -440.03 -2.15 -19.67 16 13 C 0.13 4.45 4.12 45.52 0.19 4.64 16 14 H 0.06 2.81 7.46 -2.39 -0.02 2.79 16 15 C -0.14 -4.14 7.58 31.12 0.24 -3.91 16 16 C 0.15 5.82 4.56 45.51 0.21 6.03 16 17 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 18 N -0.72 -37.68 5.31 -320.46 -1.70 -39.38 16 19 C -0.25 -13.97 9.97 84.03 0.84 -13.13 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 22 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 23 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 C -0.17 -6.00 7.68 31.12 0.24 -5.77 16 28 H 0.06 0.97 7.51 -2.39 -0.02 0.95 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.31 6.88 -2.39 -0.02 1.30 16 32 H 0.03 1.00 7.05 -2.38 -0.02 0.99 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.94 7.76 -2.38 -0.02 0.92 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.05 1.32 6.91 -2.39 -0.02 1.30 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.42 6.68 8.72 -92.71 -0.81 5.88 16 40 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.13 2.63 8.12 -2.39 -0.02 2.61 16 42 H 0.37 21.21 7.90 -92.71 -0.73 20.48 16 43 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -75.42 353.77 1.79 -73.64 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -0.57 Total: 35.91 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.95 Total: -14.10 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.57 Total: -120.60 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.42 1.79 -73.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020554274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.639 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds