Wall clock time and date at job start Tue Mar 31 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47057 * 2 1 4 4 C 1.53001 * 109.47140 * 119.99698 * 2 1 3 5 5 C 1.53002 * 109.47365 * 175.00161 * 4 2 1 6 6 H 1.09000 * 115.55766 * 29.29474 * 5 4 2 7 7 C 1.53002 * 117.49773 * 243.61158 * 5 4 2 8 8 C 1.53000 * 60.02940 * 252.51785 * 7 5 4 9 9 H 1.09007 * 117.49605 * 107.50099 * 8 7 5 10 10 C 1.50690 * 117.50063 * 252.49714 * 8 7 5 11 11 O 1.21283 * 120.00042 * 68.61154 * 10 8 7 12 12 N 1.34777 * 120.00347 * 248.60878 * 10 8 7 13 13 C 1.46501 * 120.00401 * 179.97438 * 12 10 8 14 14 H 1.09001 * 112.84603 * 23.79998 * 13 12 10 15 15 C 1.53780 * 113.61631 * 155.00275 * 13 12 10 16 16 C 1.53788 * 87.08209 * 139.98132 * 15 13 12 17 17 H 1.08993 * 113.61410 * 220.02016 * 16 15 13 18 18 N 1.46502 * 113.60949 * 89.19779 * 16 15 13 19 19 C 1.36946 * 119.99147 * 155.00148 * 18 16 15 20 20 H 1.07998 * 120.00192 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99395 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 119.99590 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47591 * 60.00146 * 23 21 19 25 25 H 1.48505 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47324 * 299.99884 * 23 21 19 27 27 C 1.53779 * 113.61490 * 252.50221 * 13 12 10 28 28 H 1.09002 * 109.47363 * 299.99831 * 1 2 3 29 29 H 1.08997 * 109.47688 * 60.00513 * 1 2 3 30 30 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47091 * 239.99293 * 2 1 3 32 32 H 1.08999 * 109.47519 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47047 * 299.99787 * 3 2 1 34 34 H 1.09005 * 109.47503 * 59.99451 * 3 2 1 35 35 H 1.09007 * 109.47338 * 55.00337 * 4 2 1 36 36 H 1.08996 * 109.47269 * 295.00408 * 4 2 1 37 37 H 1.09002 * 117.49918 * 145.01819 * 7 5 4 38 38 H 1.09002 * 117.49754 * 0.02562 * 7 5 4 39 39 H 0.97000 * 120.00030 * 0.02562 * 12 10 8 40 40 H 1.09005 * 113.61397 * 254.53084 * 15 13 12 41 41 H 1.09001 * 113.61510 * 25.35043 * 15 13 12 42 42 H 0.96987 * 120.00635 * 334.99853 * 18 16 15 43 43 H 0.97008 * 119.99668 * 180.02562 * 22 21 19 44 44 H 1.09006 * 113.61651 * 334.56284 * 27 13 12 45 45 H 1.09003 * 113.61763 * 105.46932 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 4.0720 -0.0356 0.6420 7 6 4.1697 -2.2345 1.1158 8 6 4.2804 -1.4200 2.4063 9 1 3.6648 -1.7293 3.2510 10 6 5.6325 -0.8562 2.7594 11 8 6.1139 0.0312 2.0872 12 7 6.3069 -1.3378 3.8222 13 6 7.6217 -0.7901 4.1652 14 1 7.7695 0.2223 3.7893 15 6 7.9904 -0.9564 5.6488 16 6 9.4166 -1.2851 5.1764 17 1 9.8873 -2.0923 5.7375 18 7 10.2771 -0.1068 5.0442 19 6 11.6368 -0.2378 5.1411 20 1 12.0746 -1.2096 5.3153 21 6 12.4522 0.8786 5.0153 22 7 11.9185 2.0628 4.8035 23 14 14.3069 0.6998 5.1467 24 1 14.7920 -0.2200 4.0866 25 1 14.9456 2.0300 4.9788 26 1 14.6578 0.1476 6.4798 27 6 8.7872 -1.7425 3.8499 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9562 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6054 -1.7198 1.2953 36 1 1.7516 -0.1583 2.1370 37 1 5.0749 -2.3625 0.5222 38 1 3.4813 -3.0796 1.1115 39 1 5.9221 -2.0477 4.3597 40 1 7.9226 -0.0317 6.2220 41 1 7.4859 -1.7925 6.1331 42 1 9.8838 0.7659 4.8881 43 1 12.4884 2.8429 4.7152 44 1 8.5016 -2.7944 3.8419 45 1 9.3625 -1.4524 2.9707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020605464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:09 Heat of formation + Delta-G solvation = -3.825042 kcal Electronic energy + Delta-G solvation = -21447.644606 eV Core-core repulsion = 18272.956104 eV Total energy + Delta-G solvation = -3174.688503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09317 -38.57696 -37.31053 -35.12381 -33.97512 -32.55926 -29.72610 -27.89485 -27.38266 -25.17747 -25.08254 -23.67835 -22.32446 -21.45884 -20.05149 -20.03045 -18.66743 -17.38073 -17.16032 -16.01103 -15.52565 -14.93490 -14.86479 -14.71961 -14.31455 -13.99651 -13.85165 -13.25983 -13.05494 -12.82644 -12.65172 -12.44182 -12.27166 -12.06418 -11.96430 -11.87441 -11.63004 -11.28957 -11.06857 -10.85594 -10.82398 -10.78234 -10.37592 -10.25641 -10.19298 -10.13346 -9.88431 -9.69668 -9.47223 -8.89709 -8.64853 -6.99482 -5.77869 -3.08001 2.61820 3.29918 3.44393 3.48515 3.49947 3.73018 4.38143 4.54232 4.57266 4.61501 4.76929 4.81472 4.94189 5.05884 5.11476 5.18351 5.27920 5.36463 5.41826 5.45064 5.48472 5.50392 5.52694 5.58041 5.65334 5.75605 5.81200 5.89372 5.92268 6.00950 6.01997 6.10876 6.14250 6.24260 6.26590 6.40347 6.65473 6.75129 6.81413 7.06283 7.69391 7.74514 8.40320 8.44582 9.50886 10.07448 10.41483 11.44274 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.002672 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.765332 B =10476.362947 C =10938.745639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.085 4.085 5 C -0.120 4.120 6 H 0.121 0.879 7 C -0.150 4.150 8 C -0.190 4.190 9 H 0.120 0.880 10 C 0.537 3.463 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.125 3.875 14 H 0.113 0.887 15 C -0.164 4.164 16 C 0.172 3.828 17 H 0.068 0.932 18 N -0.705 5.705 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.184 4.184 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.396 0.604 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.075 -9.096 -5.720 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.122 4.122 5 C -0.138 4.138 6 H 0.139 0.861 7 C -0.188 4.188 8 C -0.211 4.211 9 H 0.138 0.862 10 C 0.323 3.677 11 O -0.416 6.416 12 N -0.363 5.363 13 C 0.021 3.979 14 H 0.130 0.870 15 C -0.204 4.204 16 C 0.059 3.941 17 H 0.086 0.914 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.226 4.226 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.230 0.770 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.220 0.780 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.499 -8.445 -6.163 24.809 hybrid contribution 0.689 -0.172 0.330 0.784 sum -21.810 -8.617 -5.833 24.165 Atomic orbital electron populations 1.21846 0.95330 1.01532 1.01775 1.21069 0.95354 0.96604 0.98244 1.21918 1.01811 0.95630 1.01554 1.21280 0.92071 1.00556 0.98289 1.22521 0.94952 0.97448 0.98886 0.86125 1.23087 1.03390 0.94865 0.97425 1.22338 0.96869 1.07553 0.94362 0.86219 1.19673 0.85359 0.82142 0.80526 1.90718 1.69415 1.30438 1.51045 1.46054 1.20363 1.39775 1.30151 1.22641 0.80073 0.99227 0.95976 0.86955 1.23897 0.99471 1.01947 0.95109 1.20905 0.88690 0.91384 0.93161 0.91411 1.42191 1.02879 1.04366 1.84948 1.19229 0.82435 0.93895 1.42140 0.90977 1.24791 0.98200 0.95389 1.02424 1.69661 1.34354 0.98184 1.55590 0.86229 0.85262 0.76587 0.77848 1.21189 1.21662 1.21194 1.24313 0.97603 0.97846 1.02862 0.92721 0.92718 0.92833 0.91048 0.91952 0.92912 0.92714 0.91715 0.91381 0.88319 0.88025 0.77041 0.90906 0.90354 0.77973 0.93311 0.91302 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.09 -0.71 2.92 -90.62 -0.26 -0.97 16 3 C -0.15 -1.28 9.01 37.15 0.33 -0.94 16 4 C -0.08 -0.66 4.96 -26.73 -0.13 -0.79 16 5 C -0.12 -1.20 5.04 -90.58 -0.46 -1.66 16 6 H 0.12 1.49 5.91 -51.93 -0.31 1.18 16 7 C -0.15 -1.39 9.88 -26.73 -0.26 -1.65 16 8 C -0.19 -2.00 5.91 -91.74 -0.54 -2.55 16 9 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 10 C 0.54 8.01 7.61 -10.99 -0.08 7.93 16 11 O -0.54 -10.59 15.86 5.56 0.09 -10.50 16 12 N -0.71 -9.74 5.35 -53.02 -0.28 -10.02 16 13 C 0.12 2.12 4.12 -67.12 -0.28 1.85 16 14 H 0.11 2.32 7.46 -51.93 -0.39 1.93 16 15 C -0.16 -2.64 7.58 -25.92 -0.20 -2.84 16 16 C 0.17 3.40 4.56 -67.11 -0.31 3.10 16 17 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 18 N -0.71 -17.91 5.31 -52.63 -0.28 -18.19 16 19 C -0.25 -6.88 9.97 -15.05 -0.15 -7.03 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C -0.18 -3.30 7.68 -25.92 -0.20 -3.50 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.61 6.41 -51.93 -0.33 0.28 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 39 H 0.40 4.03 8.73 -40.82 -0.36 3.68 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 42 H 0.39 10.50 7.90 -40.82 -0.32 10.18 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.46 366.76 -9.53 -41.99 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -7.99 Total: 11.56 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.29 Total: -10.09 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.16 Total: -55.99 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.46 -9.53 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020605464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.162 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds