Wall clock time and date at job start Tue Mar 31 2020 01:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47057 * 2 1 4 4 C 1.53001 * 109.47140 * 119.99698 * 2 1 3 5 5 C 1.53002 * 109.47365 * 175.00161 * 4 2 1 6 6 H 1.09000 * 115.55766 * 29.29474 * 5 4 2 7 7 C 1.53002 * 117.49773 * 243.61158 * 5 4 2 8 8 C 1.53000 * 60.02940 * 252.51785 * 7 5 4 9 9 H 1.09007 * 117.49605 * 107.50099 * 8 7 5 10 10 C 1.50690 * 117.50063 * 252.49714 * 8 7 5 11 11 O 1.21283 * 120.00042 * 68.61154 * 10 8 7 12 12 N 1.34777 * 120.00347 * 248.60878 * 10 8 7 13 13 C 1.46501 * 120.00401 * 179.97438 * 12 10 8 14 14 H 1.09001 * 112.84603 * 23.79998 * 13 12 10 15 15 C 1.53780 * 113.61631 * 155.00275 * 13 12 10 16 16 C 1.53788 * 87.08209 * 139.98132 * 15 13 12 17 17 H 1.08993 * 113.61410 * 220.02016 * 16 15 13 18 18 N 1.46502 * 113.60949 * 89.19779 * 16 15 13 19 19 C 1.36946 * 119.99147 * 155.00148 * 18 16 15 20 20 H 1.07998 * 120.00192 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99395 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 119.99590 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47591 * 60.00146 * 23 21 19 25 25 H 1.48505 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47324 * 299.99884 * 23 21 19 27 27 C 1.53779 * 113.61490 * 252.50221 * 13 12 10 28 28 H 1.09002 * 109.47363 * 299.99831 * 1 2 3 29 29 H 1.08997 * 109.47688 * 60.00513 * 1 2 3 30 30 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47091 * 239.99293 * 2 1 3 32 32 H 1.08999 * 109.47519 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47047 * 299.99787 * 3 2 1 34 34 H 1.09005 * 109.47503 * 59.99451 * 3 2 1 35 35 H 1.09007 * 109.47338 * 55.00337 * 4 2 1 36 36 H 1.08996 * 109.47269 * 295.00408 * 4 2 1 37 37 H 1.09002 * 117.49918 * 145.01819 * 7 5 4 38 38 H 1.09002 * 117.49754 * 0.02562 * 7 5 4 39 39 H 0.97000 * 120.00030 * 0.02562 * 12 10 8 40 40 H 1.09005 * 113.61397 * 254.53084 * 15 13 12 41 41 H 1.09001 * 113.61510 * 25.35043 * 15 13 12 42 42 H 0.96987 * 120.00635 * 334.99853 * 18 16 15 43 43 H 0.97008 * 119.99668 * 180.02562 * 22 21 19 44 44 H 1.09006 * 113.61651 * 334.56284 * 27 13 12 45 45 H 1.09003 * 113.61763 * 105.46932 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 4.0720 -0.0356 0.6420 7 6 4.1697 -2.2345 1.1158 8 6 4.2804 -1.4200 2.4063 9 1 3.6648 -1.7293 3.2510 10 6 5.6325 -0.8562 2.7594 11 8 6.1139 0.0312 2.0872 12 7 6.3069 -1.3378 3.8222 13 6 7.6217 -0.7901 4.1652 14 1 7.7695 0.2223 3.7893 15 6 7.9904 -0.9564 5.6488 16 6 9.4166 -1.2851 5.1764 17 1 9.8873 -2.0923 5.7375 18 7 10.2771 -0.1068 5.0442 19 6 11.6368 -0.2378 5.1411 20 1 12.0746 -1.2096 5.3153 21 6 12.4522 0.8786 5.0153 22 7 11.9185 2.0628 4.8035 23 14 14.3069 0.6998 5.1467 24 1 14.7920 -0.2200 4.0866 25 1 14.9456 2.0300 4.9788 26 1 14.6578 0.1476 6.4798 27 6 8.7872 -1.7425 3.8499 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9562 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6054 -1.7198 1.2953 36 1 1.7516 -0.1583 2.1370 37 1 5.0749 -2.3625 0.5222 38 1 3.4813 -3.0796 1.1115 39 1 5.9221 -2.0477 4.3597 40 1 7.9226 -0.0317 6.2220 41 1 7.4859 -1.7925 6.1331 42 1 9.8838 0.7659 4.8881 43 1 12.4884 2.8429 4.7152 44 1 8.5016 -2.7944 3.8419 45 1 9.3625 -1.4524 2.9707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020605464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:08 Heat of formation + Delta-G solvation = -24.712808 kcal Electronic energy + Delta-G solvation = -21448.550368 eV Core-core repulsion = 18272.956104 eV Total energy + Delta-G solvation = -3175.594264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28989 -39.83747 -38.32759 -35.88696 -35.70854 -34.21205 -31.69468 -28.57230 -28.00745 -26.64067 -26.50689 -25.39145 -23.65372 -22.26595 -21.17897 -20.70009 -20.11935 -19.36695 -18.25781 -17.41523 -16.68371 -16.30131 -16.04390 -15.77226 -15.71922 -15.13296 -15.07009 -14.68034 -14.35590 -13.97809 -13.64635 -13.49454 -13.34564 -13.29301 -13.08032 -12.94126 -12.77329 -12.62470 -12.50900 -12.23432 -11.98651 -11.83718 -11.73530 -11.67335 -11.47181 -11.35555 -11.13022 -10.96917 -10.90664 -10.66026 -9.97577 -9.05246 -7.97165 -5.27391 1.45882 1.49520 1.50260 1.55874 2.19323 2.54234 2.88023 3.34452 3.61020 3.64399 3.75982 3.80962 3.87251 3.91677 4.08898 4.14427 4.21181 4.28412 4.32209 4.34580 4.49641 4.75949 4.79597 4.81132 4.84428 4.85677 4.93698 4.96554 4.99037 5.03155 5.11633 5.14676 5.17252 5.23363 5.28464 5.31551 5.42258 5.49348 5.52641 5.55716 5.68630 6.25000 6.63520 7.29282 7.32740 8.05531 8.26942 9.26276 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.002672 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.765332 B =10476.362947 C =10938.745639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.076 4.076 5 C -0.127 4.127 6 H 0.088 0.912 7 C -0.134 4.134 8 C -0.189 4.189 9 H 0.156 0.844 10 C 0.528 3.472 11 O -0.598 6.598 12 N -0.697 5.697 13 C 0.129 3.871 14 H 0.065 0.935 15 C -0.137 4.137 16 C 0.151 3.849 17 H 0.080 0.920 18 N -0.724 5.724 19 C -0.245 4.245 20 H 0.083 0.917 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.979 3.021 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.272 1.272 27 C -0.170 4.170 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.419 0.581 40 H 0.060 0.940 41 H 0.127 0.873 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.107 0.893 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.112 -12.272 -4.750 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.114 4.114 5 C -0.146 4.146 6 H 0.106 0.894 7 C -0.172 4.172 8 C -0.210 4.210 9 H 0.174 0.826 10 C 0.317 3.683 11 O -0.479 6.479 12 N -0.347 5.347 13 C 0.023 3.977 14 H 0.084 0.916 15 C -0.176 4.176 16 C 0.040 3.960 17 H 0.098 0.902 18 N -0.361 5.361 19 C -0.377 4.377 20 H 0.101 0.899 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.807 3.193 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.198 1.198 27 C -0.212 4.212 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.257 0.743 40 H 0.078 0.922 41 H 0.146 0.854 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.125 0.875 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -24.581 -11.718 -5.160 27.716 hybrid contribution 1.276 0.773 -0.014 1.492 sum -23.305 -10.945 -5.174 26.262 Atomic orbital electron populations 1.21811 0.93990 1.02363 1.01950 1.21070 0.96378 0.95531 0.98277 1.21924 1.00393 0.96933 1.01766 1.21261 0.90049 1.01847 0.98204 1.22513 0.96351 0.97298 0.98421 0.89414 1.23188 1.03106 0.95354 0.95508 1.22364 0.94448 1.08153 0.95991 0.82613 1.20542 0.86763 0.81263 0.79772 1.90704 1.71113 1.33140 1.52948 1.45814 1.18901 1.39908 1.30119 1.22185 0.81743 0.96971 0.96760 0.91633 1.23736 0.96569 1.03152 0.94173 1.21250 0.90043 0.90014 0.94689 0.90220 1.42403 1.02886 1.05468 1.85392 1.19698 0.83852 0.94142 1.39984 0.89908 1.25682 1.02926 0.95217 1.03416 1.69843 1.35673 0.98867 1.57942 0.85136 0.79668 0.76140 0.78353 1.20432 1.22416 1.19800 1.24179 0.97109 0.99993 0.99943 0.92594 0.92568 0.91638 0.91224 0.94151 0.92390 0.92827 0.89377 0.91350 0.90140 0.84441 0.74317 0.92167 0.85449 0.79776 0.94031 0.87519 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 71.98 0.66 -0.84 16 2 C -0.09 -1.29 2.92 -10.80 -0.03 -1.32 16 3 C -0.15 -2.63 9.01 71.98 0.65 -1.98 16 4 C -0.08 -1.01 4.96 30.60 0.15 -0.86 16 5 C -0.13 -2.43 5.04 -10.77 -0.05 -2.48 16 6 H 0.09 2.30 5.91 -2.39 -0.01 2.29 16 7 C -0.13 -2.15 9.88 30.60 0.30 -1.85 16 8 C -0.19 -3.56 5.91 -11.52 -0.07 -3.63 16 9 H 0.16 1.83 8.14 -2.38 -0.02 1.81 16 10 C 0.53 15.59 7.61 87.65 0.67 16.25 16 11 O -0.60 -24.79 15.86 -3.04 -0.05 -24.84 16 12 N -0.70 -17.79 5.35 -440.05 -2.36 -20.14 16 13 C 0.13 4.36 4.12 45.52 0.19 4.55 16 14 H 0.07 2.89 7.46 -2.39 -0.02 2.87 16 15 C -0.14 -4.14 7.58 31.12 0.24 -3.90 16 16 C 0.15 5.84 4.56 45.52 0.21 6.05 16 17 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 18 N -0.72 -37.66 5.31 -320.42 -1.70 -39.36 16 19 C -0.25 -13.87 9.97 84.03 0.84 -13.03 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 22 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 23 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 27 C -0.17 -6.00 7.68 31.12 0.24 -5.76 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.86 6.41 -2.39 -0.02 0.84 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.09 0.79 7.88 -2.38 -0.02 0.77 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.14 1.26 8.03 -2.39 -0.02 1.24 16 39 H 0.42 6.87 8.73 -92.71 -0.81 6.06 16 40 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.13 2.64 8.12 -2.39 -0.02 2.62 16 42 H 0.37 21.19 7.90 -92.72 -0.73 20.46 16 43 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 44 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.62 366.76 2.08 -73.54 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.57 Total: 36.39 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.45 Total: -13.08 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -3.78 Total: -121.08 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -75.62 2.08 -73.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020605464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.824 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds