Wall clock time and date at job start Tue Mar 31 2020 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47391 * 2 1 4 4 C 1.50699 * 109.47400 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99944 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00354 * 179.97438 * 4 3 2 7 7 C 1.47066 * 120.84434 * 354.95356 * 6 4 3 8 8 C 1.53134 * 109.11596 * 126.51082 * 7 6 4 9 9 C 1.53331 * 109.52011 * 53.96317 * 8 7 6 10 10 C 1.52825 * 109.30780 * 299.20117 * 9 8 7 11 11 H 1.09004 * 109.46841 * 302.00577 * 10 9 8 12 12 C 1.53061 * 110.34374 * 181.46288 * 10 9 8 13 13 N 1.47071 * 108.33593 * 184.56409 * 12 10 9 14 14 C 1.36936 * 120.46982 * 233.30195 * 13 12 10 15 15 H 1.08005 * 119.99890 * 144.17345 * 14 13 12 16 16 C 1.38813 * 120.00189 * 324.16128 * 14 13 12 17 17 N 1.31625 * 119.99577 * 359.38540 * 16 14 13 18 18 Si 1.86800 * 120.00058 * 179.37933 * 16 14 13 19 19 H 1.48496 * 109.47051 * 60.00368 * 18 16 14 20 20 H 1.48499 * 109.47076 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46998 * 300.00412 * 18 16 14 22 22 C 1.46866 * 119.05529 * 53.32057 * 13 12 10 23 23 C 1.53315 * 109.10316 * 307.34330 * 22 13 12 24 24 C 1.46712 * 120.84805 * 174.93469 * 6 4 3 25 25 H 1.09002 * 109.53311 * 114.60375 * 24 6 4 26 26 H 1.09001 * 109.47163 * 300.00610 * 1 2 3 27 27 H 1.09002 * 109.46845 * 60.00148 * 1 2 3 28 28 H 1.09000 * 109.47699 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47163 * 239.99390 * 2 1 3 30 30 H 1.09002 * 109.46845 * 119.99852 * 2 1 3 31 31 H 1.09001 * 109.47465 * 59.99575 * 3 2 1 32 32 H 1.09002 * 109.47005 * 299.99754 * 3 2 1 33 33 H 1.08999 * 109.54381 * 246.42470 * 7 6 4 34 34 H 1.09001 * 109.54346 * 6.60348 * 7 6 4 35 35 H 1.08999 * 109.44920 * 174.08619 * 8 7 6 36 36 H 1.09008 * 109.44515 * 293.99618 * 8 7 6 37 37 H 1.09002 * 109.48418 * 179.25708 * 9 8 7 38 38 H 1.09000 * 109.52322 * 59.16945 * 9 8 7 39 39 H 1.09001 * 109.68858 * 64.85423 * 12 10 9 40 40 H 1.08999 * 109.72315 * 304.29199 * 12 10 9 41 41 H 0.97001 * 119.99187 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.53499 * 187.45573 * 22 13 12 43 43 H 1.09001 * 109.59326 * 67.26935 * 22 13 12 44 44 H 1.09005 * 109.55218 * 294.27154 * 23 22 13 45 45 H 1.08993 * 109.55981 * 173.94621 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2210 2.6096 0.0002 7 6 3.5088 3.8914 -0.1119 8 6 3.9273 4.8006 1.0471 9 6 5.4554 4.9229 1.0764 10 6 6.0692 3.5393 1.2870 11 1 5.6904 3.1113 2.2152 12 6 7.5949 3.6389 1.3564 13 7 8.1438 2.2776 1.4485 14 6 9.0105 1.9449 2.4551 15 1 8.9757 0.9586 2.8938 16 6 9.9340 2.8753 2.9116 17 7 9.9847 4.0733 2.3686 18 14 11.1047 2.4273 4.2966 19 1 11.9367 1.2679 3.8859 20 1 11.9835 3.5862 4.5963 21 1 10.3242 2.0718 5.5089 22 6 7.7494 1.2801 0.4452 23 6 6.2192 1.2246 0.3675 24 6 5.6836 2.6337 0.1120 25 1 6.1132 3.0251 -0.8101 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7625 4.3678 -1.0589 34 1 2.4339 3.7164 -0.0681 35 1 3.4847 5.7875 0.9122 36 1 3.5796 4.3729 1.9876 37 1 5.7519 5.5807 1.8934 38 1 5.8059 5.3364 0.1307 39 1 7.8859 4.2125 2.2364 40 1 7.9729 4.1273 0.4582 41 1 10.6298 4.7235 2.6878 42 1 8.1354 0.3020 0.7323 43 1 8.1538 1.5603 -0.5274 44 1 5.8195 0.8475 1.3089 45 1 5.9189 0.5667 -0.4480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021495148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:18 Heat of formation + Delta-G solvation = -20.363589 kcal Electronic energy + Delta-G solvation = -23575.973832 eV Core-core repulsion = 20400.568164 eV Total energy + Delta-G solvation = -3175.405668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40223 -37.77474 -35.76045 -34.49014 -32.74627 -32.53810 -30.22686 -29.30648 -27.79480 -25.49162 -24.61937 -22.64977 -22.42356 -21.44469 -20.14227 -19.30107 -18.69635 -16.66219 -16.41737 -15.87796 -15.66987 -14.80506 -14.52950 -14.18314 -14.07613 -13.86561 -13.39123 -13.25985 -12.96084 -12.83933 -12.48325 -12.17648 -12.05522 -11.94130 -11.74381 -11.41689 -11.24508 -10.90632 -10.86678 -10.83850 -10.81853 -10.70217 -10.61503 -10.22340 -9.95265 -9.93803 -9.75879 -9.40340 -8.66142 -8.40250 -8.15977 -6.44698 -5.73582 -3.25722 2.87734 3.24394 3.41428 3.45555 3.47510 4.52591 4.59259 4.78546 4.90709 4.91350 5.08038 5.17788 5.29755 5.37765 5.42097 5.47079 5.50579 5.52709 5.56816 5.70742 5.74411 5.79921 5.90524 5.97966 6.02121 6.06825 6.19656 6.24252 6.32015 6.41917 6.47093 6.52787 6.64196 6.73815 6.88245 7.03989 7.13708 7.26696 7.44783 7.75116 7.77809 7.84813 8.50073 8.58602 9.30384 9.89855 10.50329 11.33488 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024983 B = 0.004720 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.492528 B = 5931.172364 C = 6562.581497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.509 3.491 5 O -0.532 6.532 6 N -0.610 5.610 7 C 0.108 3.892 8 C -0.133 4.133 9 C -0.112 4.112 10 C -0.121 4.121 11 H 0.064 0.936 12 C 0.183 3.817 13 N -0.595 5.595 14 C -0.252 4.252 15 H 0.061 0.939 16 C 0.008 3.992 17 N -0.907 5.907 18 Si 0.904 3.096 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.139 3.861 23 C -0.120 4.120 24 C 0.157 3.843 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.054 0.946 43 H 0.013 0.987 44 H 0.060 0.940 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.849 0.726 -5.669 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.182 4.182 4 C 0.298 3.702 5 O -0.409 6.409 6 N -0.343 5.343 7 C -0.015 4.015 8 C -0.172 4.172 9 C -0.150 4.150 10 C -0.142 4.142 11 H 0.082 0.918 12 C 0.057 3.943 13 N -0.317 5.317 14 C -0.382 4.382 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.551 5.551 18 Si 0.733 3.267 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.012 3.988 23 C -0.159 4.159 24 C 0.055 3.945 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.079 0.921 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.386 0.292 -5.629 18.277 hybrid contribution 0.590 0.121 0.750 0.962 sum -16.796 0.413 -4.879 17.495 Atomic orbital electron populations 1.21792 0.95807 1.01750 1.01561 1.21272 0.94878 0.94991 1.03568 1.21784 0.93047 0.99716 1.03634 1.20651 0.89803 0.83553 0.76238 1.90725 1.69006 1.31640 1.49550 1.48363 1.08073 1.05466 1.72384 1.21698 0.96378 0.84495 0.98909 1.21953 0.97780 0.98974 0.98464 1.21513 0.93366 0.98116 1.01985 1.22297 1.01155 0.93485 0.97292 0.91769 1.20822 0.84924 0.87222 1.01358 1.44034 1.51686 1.07498 1.28524 1.19139 1.08997 0.99217 1.10834 0.92110 1.25304 0.97257 0.96960 0.99537 1.69909 1.37193 1.04834 1.43203 0.86358 0.81058 0.77384 0.81864 1.20837 1.21609 1.20986 1.21150 0.92052 0.93607 0.91950 1.22519 0.96656 0.93938 1.02827 1.21311 0.76871 0.98362 0.97965 0.91993 0.92809 0.92872 0.92557 0.91320 0.91232 0.89382 0.89527 0.91627 0.90362 0.91266 0.91827 0.91620 0.92176 0.88876 0.96507 0.93585 0.92763 0.96883 0.92133 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.11 -1.16 5.22 -26.73 -0.14 -1.29 16 3 C -0.14 -1.50 4.06 -27.89 -0.11 -1.61 16 4 C 0.51 7.73 7.58 -10.99 -0.08 7.65 16 5 O -0.53 -9.94 11.65 5.56 0.06 -9.87 16 6 N -0.61 -9.15 2.97 -165.32 -0.49 -9.65 16 7 C 0.11 1.21 6.34 -3.66 -0.02 1.19 16 8 C -0.13 -1.57 6.08 -26.49 -0.16 -1.73 16 9 C -0.11 -1.71 5.24 -26.65 -0.14 -1.85 16 10 C -0.12 -2.34 2.21 -90.54 -0.20 -2.54 16 11 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 12 C 0.18 4.40 4.55 -3.70 -0.02 4.38 16 13 N -0.59 -15.55 2.99 -172.25 -0.52 -16.06 16 14 C -0.25 -7.15 9.53 -15.06 -0.14 -7.29 16 15 H 0.06 1.72 7.83 -52.48 -0.41 1.30 16 16 C 0.01 0.22 5.23 -17.43 -0.09 0.13 16 17 N -0.91 -26.37 10.86 55.49 0.60 -25.77 16 18 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.14 3.20 6.50 -3.68 -0.02 3.18 16 23 C -0.12 -2.47 3.82 -26.62 -0.10 -2.57 16 24 C 0.16 2.87 2.64 -67.73 -0.18 2.69 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 32 H 0.09 0.74 7.75 -51.93 -0.40 0.34 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.66 5.96 -51.93 -0.31 0.35 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 2.50 6.14 -51.93 -0.32 2.19 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.05 1.25 7.93 -51.93 -0.41 0.84 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 1.37 7.46 -51.93 -0.39 0.98 16 45 H 0.08 1.70 6.12 -51.93 -0.32 1.38 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -31.16 337.57 -9.34 -40.50 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.02 Total: -0.77 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.05 Total: -0.50 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.40 Total: -51.48 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.87 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.16 -9.34 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021495148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.137 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds