Wall clock time and date at job start Tue Mar 31 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47391 * 2 1 4 4 C 1.50699 * 109.47400 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99944 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00354 * 179.97438 * 4 3 2 7 7 C 1.47066 * 120.84434 * 354.95356 * 6 4 3 8 8 C 1.53134 * 109.11596 * 126.51082 * 7 6 4 9 9 C 1.53331 * 109.52011 * 53.96317 * 8 7 6 10 10 C 1.52825 * 109.30780 * 299.20117 * 9 8 7 11 11 H 1.09004 * 109.46841 * 302.00577 * 10 9 8 12 12 C 1.53061 * 110.34374 * 181.46288 * 10 9 8 13 13 N 1.47071 * 108.33593 * 184.56409 * 12 10 9 14 14 C 1.36936 * 120.46982 * 233.30195 * 13 12 10 15 15 H 1.08005 * 119.99890 * 144.17345 * 14 13 12 16 16 C 1.38813 * 120.00189 * 324.16128 * 14 13 12 17 17 N 1.31625 * 119.99577 * 359.38540 * 16 14 13 18 18 Si 1.86800 * 120.00058 * 179.37933 * 16 14 13 19 19 H 1.48496 * 109.47051 * 60.00368 * 18 16 14 20 20 H 1.48499 * 109.47076 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46998 * 300.00412 * 18 16 14 22 22 C 1.46866 * 119.05529 * 53.32057 * 13 12 10 23 23 C 1.53315 * 109.10316 * 307.34330 * 22 13 12 24 24 C 1.46712 * 120.84805 * 174.93469 * 6 4 3 25 25 H 1.09002 * 109.53311 * 114.60375 * 24 6 4 26 26 H 1.09001 * 109.47163 * 300.00610 * 1 2 3 27 27 H 1.09002 * 109.46845 * 60.00148 * 1 2 3 28 28 H 1.09000 * 109.47699 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47163 * 239.99390 * 2 1 3 30 30 H 1.09002 * 109.46845 * 119.99852 * 2 1 3 31 31 H 1.09001 * 109.47465 * 59.99575 * 3 2 1 32 32 H 1.09002 * 109.47005 * 299.99754 * 3 2 1 33 33 H 1.08999 * 109.54381 * 246.42470 * 7 6 4 34 34 H 1.09001 * 109.54346 * 6.60348 * 7 6 4 35 35 H 1.08999 * 109.44920 * 174.08619 * 8 7 6 36 36 H 1.09008 * 109.44515 * 293.99618 * 8 7 6 37 37 H 1.09002 * 109.48418 * 179.25708 * 9 8 7 38 38 H 1.09000 * 109.52322 * 59.16945 * 9 8 7 39 39 H 1.09001 * 109.68858 * 64.85423 * 12 10 9 40 40 H 1.08999 * 109.72315 * 304.29199 * 12 10 9 41 41 H 0.97001 * 119.99187 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.53499 * 187.45573 * 22 13 12 43 43 H 1.09001 * 109.59326 * 67.26935 * 22 13 12 44 44 H 1.09005 * 109.55218 * 294.27154 * 23 22 13 45 45 H 1.08993 * 109.55981 * 173.94621 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2210 2.6096 0.0002 7 6 3.5088 3.8914 -0.1119 8 6 3.9273 4.8006 1.0471 9 6 5.4554 4.9229 1.0764 10 6 6.0692 3.5393 1.2870 11 1 5.6904 3.1113 2.2152 12 6 7.5949 3.6389 1.3564 13 7 8.1438 2.2776 1.4485 14 6 9.0105 1.9449 2.4551 15 1 8.9757 0.9586 2.8938 16 6 9.9340 2.8753 2.9116 17 7 9.9847 4.0733 2.3686 18 14 11.1047 2.4273 4.2966 19 1 11.9367 1.2679 3.8859 20 1 11.9835 3.5862 4.5963 21 1 10.3242 2.0718 5.5089 22 6 7.7494 1.2801 0.4452 23 6 6.2192 1.2246 0.3675 24 6 5.6836 2.6337 0.1120 25 1 6.1132 3.0251 -0.8101 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7625 4.3678 -1.0589 34 1 2.4339 3.7164 -0.0681 35 1 3.4847 5.7875 0.9122 36 1 3.5796 4.3729 1.9876 37 1 5.7519 5.5807 1.8934 38 1 5.8059 5.3364 0.1307 39 1 7.8859 4.2125 2.2364 40 1 7.9729 4.1273 0.4582 41 1 10.6298 4.7235 2.6878 42 1 8.1354 0.3020 0.7323 43 1 8.1538 1.5603 -0.5274 44 1 5.8195 0.8475 1.3089 45 1 5.9189 0.5667 -0.4480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021495148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:17 Heat of formation + Delta-G solvation = -38.561688 kcal Electronic energy + Delta-G solvation = -23576.762961 eV Core-core repulsion = 20400.568164 eV Total energy + Delta-G solvation = -3176.194797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69540 -39.22052 -37.31889 -35.45129 -34.36214 -34.07696 -31.95691 -30.87986 -28.84509 -27.20902 -26.01476 -24.25232 -23.85657 -22.52344 -21.50500 -21.03986 -19.83981 -18.72660 -17.59406 -17.07263 -16.90091 -16.67355 -15.79805 -15.55179 -15.33850 -15.24950 -15.09919 -14.70232 -14.11825 -14.11039 -13.83329 -13.65915 -13.47355 -13.15649 -12.81260 -12.77343 -12.74304 -12.62246 -12.48041 -12.18211 -12.11707 -12.04292 -11.88935 -11.69715 -11.62854 -11.57408 -11.45130 -11.03760 -10.58265 -10.03902 -9.46627 -8.54870 -7.89078 -5.46690 1.43497 1.46011 1.52880 1.72847 2.09420 2.47155 3.24910 3.58678 3.63242 3.88743 3.91565 4.03581 4.05775 4.14321 4.15917 4.30383 4.35811 4.50502 4.58394 4.62041 4.70573 4.73665 4.76363 4.81250 4.87063 4.93124 4.93782 4.98645 5.02161 5.14321 5.19749 5.26261 5.31349 5.33960 5.39252 5.43354 5.49565 5.53688 5.61881 5.72319 5.79007 6.41687 6.60592 7.14879 7.32823 7.81179 8.36411 9.14542 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024983 B = 0.004720 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.492528 B = 5931.172364 C = 6562.581497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.130 4.130 4 C 0.498 3.502 5 O -0.577 6.577 6 N -0.611 5.611 7 C 0.103 3.897 8 C -0.125 4.125 9 C -0.109 4.109 10 C -0.107 4.107 11 H 0.040 0.960 12 C 0.192 3.808 13 N -0.615 5.615 14 C -0.275 4.275 15 H 0.054 0.946 16 C -0.039 4.039 17 N -0.930 5.930 18 Si 0.971 3.029 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.137 3.863 23 C -0.099 4.099 24 C 0.164 3.836 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.060 0.940 40 H -0.001 1.001 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.688 1.893 -6.149 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.169 4.169 4 C 0.289 3.711 5 O -0.458 6.458 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.163 4.163 9 C -0.148 4.148 10 C -0.128 4.128 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.338 5.338 14 C -0.406 4.406 15 H 0.072 0.928 16 C -0.235 4.235 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C 0.011 3.989 23 C -0.138 4.138 24 C 0.060 3.940 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.271 1.476 -6.121 21.226 hybrid contribution 1.499 -0.271 0.877 1.758 sum -18.771 1.205 -5.244 19.527 Atomic orbital electron populations 1.21740 0.93315 1.02331 1.02826 1.21254 0.96918 0.94878 1.01712 1.21810 0.88768 1.00146 1.06187 1.21596 0.91885 0.82709 0.74931 1.90696 1.70358 1.33247 1.51493 1.48415 1.06400 1.07404 1.72091 1.22071 0.98189 0.82279 0.99308 1.21925 0.94393 1.01264 0.98711 1.21498 0.96376 0.94869 1.02024 1.22005 0.97569 0.96508 0.96729 0.94181 1.20607 0.88199 0.85787 0.98762 1.44303 1.52100 1.08566 1.28848 1.19396 1.10051 0.99270 1.11853 0.92798 1.26036 0.98610 0.96789 1.02094 1.70083 1.37535 1.05464 1.44450 0.85315 0.78803 0.77137 0.78975 1.20301 1.21213 1.20322 1.21234 0.94049 0.92496 0.91130 1.22237 0.94359 0.95737 1.01458 1.20941 0.79794 0.96112 0.97156 0.92111 0.91776 0.91261 0.92481 0.92862 0.93653 0.87106 0.86170 0.89968 0.86316 0.87512 0.92272 0.92300 0.91537 0.92169 0.98330 0.93790 0.93680 0.96898 0.94661 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.11 -2.12 5.22 30.59 0.16 -1.96 16 3 C -0.13 -2.27 4.06 29.85 0.12 -2.15 16 4 C 0.50 14.30 7.58 87.66 0.66 14.97 16 5 O -0.58 -21.79 11.65 -3.04 -0.04 -21.82 16 6 N -0.61 -17.08 2.97 -795.34 -2.36 -19.44 16 7 C 0.10 1.83 6.34 86.32 0.55 2.38 16 8 C -0.12 -2.47 6.08 30.75 0.19 -2.28 16 9 C -0.11 -3.21 5.24 30.65 0.16 -3.05 16 10 C -0.11 -4.20 2.21 -10.74 -0.02 -4.23 16 11 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 12 C 0.19 9.68 4.55 86.29 0.39 10.07 16 13 N -0.61 -33.69 2.99 -698.89 -2.09 -35.78 16 14 C -0.28 -16.28 9.53 84.03 0.80 -15.48 16 15 H 0.05 3.18 7.83 -2.91 -0.02 3.16 16 16 C -0.04 -2.27 5.23 84.86 0.44 -1.83 16 17 N -0.93 -55.77 10.86 21.65 0.24 -55.54 16 18 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 C 0.14 6.62 6.50 86.42 0.56 7.18 16 23 C -0.10 -4.21 3.82 30.66 0.12 -4.10 16 24 C 0.16 5.99 2.64 45.01 0.12 6.11 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 30 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 31 H 0.11 1.51 7.91 -2.39 -0.02 1.50 16 32 H 0.12 1.37 7.75 -2.39 -0.02 1.35 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 1.24 5.96 -2.39 -0.01 1.22 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 3.41 6.14 -2.39 -0.01 3.39 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.04 2.19 7.93 -2.39 -0.02 2.17 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.03 1.66 7.46 -2.38 -0.02 1.64 16 45 H 0.08 3.58 6.12 -2.39 -0.01 3.56 16 Total: -1.00 -72.41 337.57 3.68 -68.73 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.94 Total: 11.01 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.97 Total: 4.52 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.22 Total: -110.76 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.04 Total: -21.82 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -72.41 3.68 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021495148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.168 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds