Wall clock time and date at job start Tue Mar 31 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46627 * 2 1 4 4 C 1.50699 * 109.47211 * 119.99499 * 2 1 3 5 5 O 1.21279 * 119.99937 * 348.62538 * 4 2 1 6 6 N 1.34781 * 119.99834 * 168.62159 * 4 2 1 7 7 C 1.47070 * 120.84706 * 5.63688 * 6 4 2 8 8 C 1.53125 * 109.04173 * 126.58969 * 7 6 4 9 9 C 1.53142 * 109.61931 * 54.00548 * 8 7 6 10 10 C 1.52823 * 109.26411 * 299.14509 * 9 8 7 11 11 H 1.08999 * 109.48578 * 301.99429 * 10 9 8 12 12 C 1.53062 * 110.33905 * 181.44553 * 10 9 8 13 13 N 1.47057 * 108.34113 * 184.57409 * 12 10 9 14 14 C 1.36941 * 120.47293 * 233.34035 * 13 12 10 15 15 H 1.07999 * 119.99947 * 148.86722 * 14 13 12 16 16 C 1.38810 * 119.99627 * 328.86477 * 14 13 12 17 17 N 1.31615 * 120.00728 * 341.97113 * 16 14 13 18 18 Si 1.86804 * 119.99553 * 161.96496 * 16 14 13 19 19 H 1.48505 * 109.46872 * 60.00529 * 18 16 14 20 20 H 1.48509 * 109.46989 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47659 * 300.00475 * 18 16 14 22 22 C 1.46866 * 119.05960 * 53.32336 * 13 12 10 23 23 C 1.53323 * 109.15611 * 307.30079 * 22 13 12 24 24 C 1.46713 * 120.84264 * 185.65379 * 6 4 2 25 25 H 1.09000 * 109.52211 * 114.78264 * 24 6 4 26 26 H 1.08994 * 109.47319 * 299.99829 * 1 2 3 27 27 H 1.09001 * 109.47054 * 60.00313 * 1 2 3 28 28 H 1.09004 * 109.46464 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47319 * 240.00170 * 2 1 3 30 30 H 1.09011 * 109.46892 * 187.91563 * 3 2 1 31 31 H 1.09001 * 109.47177 * 307.90984 * 3 2 1 32 32 H 1.08993 * 109.47399 * 67.91592 * 3 2 1 33 33 H 1.08996 * 109.53971 * 246.46114 * 7 6 4 34 34 H 1.09003 * 109.53939 * 6.72525 * 7 6 4 35 35 H 1.09005 * 109.44178 * 174.04226 * 8 7 6 36 36 H 1.09000 * 109.45335 * 293.95166 * 8 7 6 37 37 H 1.09005 * 109.50646 * 179.21320 * 9 8 7 38 38 H 1.08994 * 109.50890 * 59.08299 * 9 8 7 39 39 H 1.09008 * 109.69052 * 64.85988 * 12 10 9 40 40 H 1.09000 * 109.72165 * 304.30876 * 12 10 9 41 41 H 0.96995 * 120.00899 * 179.97438 * 17 16 14 42 42 H 1.08994 * 109.53658 * 67.22351 * 22 13 12 43 43 H 1.09003 * 109.53683 * 187.38576 * 22 13 12 44 44 H 1.09002 * 109.55548 * 173.98741 * 23 22 13 45 45 H 1.08995 * 109.56298 * 294.30960 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2637 -0.9883 2.1265 6 7 3.3359 -1.0367 1.3353 7 6 4.3062 -0.6017 0.3192 8 6 5.4631 0.1242 1.0117 9 6 6.0504 -0.7714 2.1063 10 6 4.9693 -1.0759 3.1426 11 1 4.5909 -0.1421 3.5584 12 6 5.5403 -1.9414 4.2685 13 7 4.4426 -2.2989 5.1795 14 6 4.5465 -2.0526 6.5225 15 1 3.6621 -1.8288 7.1006 16 6 5.7887 -2.0905 7.1409 17 7 6.7990 -2.6943 6.5520 18 14 6.0265 -1.2842 8.8091 19 1 5.1143 -1.9136 9.7976 20 1 7.4332 -1.4641 9.2499 21 1 5.7208 0.1654 8.7065 22 6 3.2330 -2.9235 4.6284 23 6 2.6990 -2.0593 3.4801 24 6 3.8229 -1.8352 2.4656 25 1 4.1868 -2.7964 2.1025 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1208 1.4459 -0.1415 31 1 1.5657 1.9956 -0.8108 32 1 1.7968 1.9139 0.9522 33 1 4.6889 -1.4711 -0.2152 34 1 3.8197 0.0749 -0.3834 35 1 6.2362 0.3562 0.2791 36 1 5.0966 1.0490 1.4572 37 1 6.8826 -0.2585 2.5886 38 1 6.4032 -1.7030 1.6641 39 1 6.3013 -1.3815 4.8123 40 1 5.9797 -2.8467 3.8498 41 1 7.6671 -2.7205 6.9839 42 1 3.4747 -3.9182 4.2540 43 1 2.4755 -3.0018 5.4083 44 1 1.8652 -2.5689 2.9971 45 1 2.3641 -1.0987 3.8715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021526995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:34 Heat of formation + Delta-G solvation = -12.587388 kcal Electronic energy + Delta-G solvation = -23972.654694 eV Core-core repulsion = 20797.586228 eV Total energy + Delta-G solvation = -3175.068467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56425 -37.85301 -35.88306 -34.55989 -32.77952 -32.34617 -30.17185 -29.12838 -27.30994 -25.48270 -25.25680 -23.02242 -22.45703 -21.82628 -20.09126 -19.35825 -18.45680 -16.77409 -16.64352 -15.80310 -15.20445 -14.79367 -14.44807 -14.32345 -14.04846 -13.88138 -13.40114 -13.20789 -12.82260 -12.65363 -12.44464 -12.26606 -12.13302 -12.05094 -11.83545 -11.40921 -11.26214 -11.11441 -10.98137 -10.86665 -10.81082 -10.68273 -10.56064 -10.25110 -9.98082 -9.95392 -9.68968 -9.40152 -8.73511 -8.37140 -8.14948 -6.54035 -5.74197 -3.17463 2.86613 3.22937 3.42119 3.46883 3.49537 4.49652 4.54657 4.75943 4.84542 4.90946 5.07099 5.13760 5.25501 5.37985 5.42403 5.47493 5.50029 5.55747 5.65251 5.70257 5.75795 5.76379 5.82223 5.95081 5.97581 6.09890 6.15988 6.21431 6.28831 6.40878 6.44937 6.49210 6.60997 6.69373 6.85295 7.01134 7.08856 7.26942 7.36410 7.62870 7.74160 7.87080 8.48814 8.53300 9.27205 9.90597 10.49430 11.34114 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024961 B = 0.005175 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.464254 B = 5409.123353 C = 5900.826706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.118 4.118 3 C -0.150 4.150 4 C 0.513 3.487 5 O -0.529 6.529 6 N -0.607 5.607 7 C 0.099 3.901 8 C -0.133 4.133 9 C -0.112 4.112 10 C -0.120 4.120 11 H 0.066 0.934 12 C 0.186 3.814 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.062 0.938 16 C 0.006 3.994 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.138 3.862 23 C -0.113 4.113 24 C 0.156 3.844 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.013 0.987 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 6.370 -17.184 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.139 4.139 3 C -0.207 4.207 4 C 0.301 3.699 5 O -0.406 6.406 6 N -0.340 5.340 7 C -0.024 4.024 8 C -0.171 4.171 9 C -0.150 4.150 10 C -0.141 4.141 11 H 0.084 0.916 12 C 0.059 3.941 13 N -0.314 5.314 14 C -0.383 4.383 15 H 0.080 0.920 16 C -0.193 4.193 17 N -0.546 5.546 18 Si 0.729 3.271 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.211 1.211 22 C 0.011 3.989 23 C -0.152 4.152 24 C 0.055 3.945 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.363 6.170 -16.614 18.517 hybrid contribution 0.449 0.401 0.765 0.974 sum -4.914 6.571 -15.850 17.848 Atomic orbital electron populations 1.21595 0.92733 1.02548 1.01956 1.21346 0.98129 0.97298 0.97134 1.21958 1.01520 0.94317 1.02883 1.20582 0.81848 0.79110 0.88345 1.90755 1.56113 1.53627 1.40069 1.48307 1.06967 1.53473 1.25285 1.21922 0.90570 0.99143 0.90727 1.21910 0.97232 0.99262 0.98710 1.21485 0.98451 0.99193 0.95895 1.22246 0.94678 1.00504 0.96689 0.91571 1.20669 0.90572 0.94893 0.87966 1.44046 1.14789 1.68993 1.03597 1.19129 0.93434 1.41427 0.84309 0.91984 1.25072 0.97448 0.99157 0.97622 1.70035 1.01767 1.43304 1.39456 0.86425 0.76763 0.79726 0.84200 1.20832 1.21664 1.21063 1.21151 0.89938 0.93398 0.94384 1.22459 0.95422 1.01819 0.95506 1.21345 0.95571 0.92517 0.85112 0.91937 0.91697 0.92439 0.92282 0.89349 0.91459 0.91675 0.91969 0.91778 0.89447 0.91245 0.91768 0.91650 0.92122 0.90126 0.96243 0.93681 0.96957 0.92707 0.91094 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.55 37.16 0.32 -1.05 16 2 C -0.12 -1.26 2.41 -91.77 -0.22 -1.49 16 3 C -0.15 -1.36 8.83 37.16 0.33 -1.04 16 4 C 0.51 7.80 6.90 -10.98 -0.08 7.73 16 5 O -0.53 -9.96 11.53 5.56 0.06 -9.89 16 6 N -0.61 -9.06 2.97 -165.23 -0.49 -9.55 16 7 C 0.10 1.11 5.77 -3.67 -0.02 1.08 16 8 C -0.13 -1.55 6.06 -26.59 -0.16 -1.71 16 9 C -0.11 -1.69 5.24 -26.75 -0.14 -1.83 16 10 C -0.12 -2.29 2.21 -90.54 -0.20 -2.49 16 11 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 12 C 0.19 4.43 4.62 -3.71 -0.02 4.41 16 13 N -0.59 -15.42 2.98 -172.26 -0.51 -15.94 16 14 C -0.25 -7.20 9.52 -15.06 -0.14 -7.34 16 15 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 16 C 0.01 0.17 4.85 -17.43 -0.08 0.08 16 17 N -0.90 -26.45 11.50 55.49 0.64 -25.81 16 18 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.14 3.17 6.50 -3.68 -0.02 3.14 16 23 C -0.11 -2.31 3.80 -26.54 -0.10 -2.41 16 24 C 0.16 2.84 2.64 -67.65 -0.18 2.66 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 0.77 7.97 -51.93 -0.41 0.36 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.79 7.61 -51.93 -0.40 0.39 16 30 H 0.07 0.56 5.53 -51.92 -0.29 0.27 16 31 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.76 3.96 -51.93 -0.21 0.55 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 2.14 6.35 -51.92 -0.33 1.81 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 1.26 7.93 -51.93 -0.41 0.85 16 44 H 0.07 1.44 6.47 -51.93 -0.34 1.10 16 45 H 0.07 1.56 7.14 -51.93 -0.37 1.19 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -31.48 332.80 -8.83 -40.32 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.79 Total: -0.98 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.72 Total: -0.26 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.37 Total: -51.30 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.06 Total: -9.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.48 -8.83 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021526995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.730 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds