Wall clock time and date at job start Tue Mar 31 2020 02:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46627 * 2 1 4 4 C 1.50699 * 109.47211 * 119.99499 * 2 1 3 5 5 O 1.21279 * 119.99937 * 348.62538 * 4 2 1 6 6 N 1.34781 * 119.99834 * 168.62159 * 4 2 1 7 7 C 1.47070 * 120.84706 * 5.63688 * 6 4 2 8 8 C 1.53125 * 109.04173 * 126.58969 * 7 6 4 9 9 C 1.53142 * 109.61931 * 54.00548 * 8 7 6 10 10 C 1.52823 * 109.26411 * 299.14509 * 9 8 7 11 11 H 1.08999 * 109.48578 * 301.99429 * 10 9 8 12 12 C 1.53062 * 110.33905 * 181.44553 * 10 9 8 13 13 N 1.47057 * 108.34113 * 184.57409 * 12 10 9 14 14 C 1.36941 * 120.47293 * 233.34035 * 13 12 10 15 15 H 1.07999 * 119.99947 * 148.86722 * 14 13 12 16 16 C 1.38810 * 119.99627 * 328.86477 * 14 13 12 17 17 N 1.31615 * 120.00728 * 341.97113 * 16 14 13 18 18 Si 1.86804 * 119.99553 * 161.96496 * 16 14 13 19 19 H 1.48505 * 109.46872 * 60.00529 * 18 16 14 20 20 H 1.48509 * 109.46989 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47659 * 300.00475 * 18 16 14 22 22 C 1.46866 * 119.05960 * 53.32336 * 13 12 10 23 23 C 1.53323 * 109.15611 * 307.30079 * 22 13 12 24 24 C 1.46713 * 120.84264 * 185.65379 * 6 4 2 25 25 H 1.09000 * 109.52211 * 114.78264 * 24 6 4 26 26 H 1.08994 * 109.47319 * 299.99829 * 1 2 3 27 27 H 1.09001 * 109.47054 * 60.00313 * 1 2 3 28 28 H 1.09004 * 109.46464 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47319 * 240.00170 * 2 1 3 30 30 H 1.09011 * 109.46892 * 187.91563 * 3 2 1 31 31 H 1.09001 * 109.47177 * 307.90984 * 3 2 1 32 32 H 1.08993 * 109.47399 * 67.91592 * 3 2 1 33 33 H 1.08996 * 109.53971 * 246.46114 * 7 6 4 34 34 H 1.09003 * 109.53939 * 6.72525 * 7 6 4 35 35 H 1.09005 * 109.44178 * 174.04226 * 8 7 6 36 36 H 1.09000 * 109.45335 * 293.95166 * 8 7 6 37 37 H 1.09005 * 109.50646 * 179.21320 * 9 8 7 38 38 H 1.08994 * 109.50890 * 59.08299 * 9 8 7 39 39 H 1.09008 * 109.69052 * 64.85988 * 12 10 9 40 40 H 1.09000 * 109.72165 * 304.30876 * 12 10 9 41 41 H 0.96995 * 120.00899 * 179.97438 * 17 16 14 42 42 H 1.08994 * 109.53658 * 67.22351 * 22 13 12 43 43 H 1.09003 * 109.53683 * 187.38576 * 22 13 12 44 44 H 1.09002 * 109.55548 * 173.98741 * 23 22 13 45 45 H 1.08995 * 109.56298 * 294.30960 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2637 -0.9883 2.1265 6 7 3.3359 -1.0367 1.3353 7 6 4.3062 -0.6017 0.3192 8 6 5.4631 0.1242 1.0117 9 6 6.0504 -0.7714 2.1063 10 6 4.9693 -1.0759 3.1426 11 1 4.5909 -0.1421 3.5584 12 6 5.5403 -1.9414 4.2685 13 7 4.4426 -2.2989 5.1795 14 6 4.5465 -2.0526 6.5225 15 1 3.6621 -1.8288 7.1006 16 6 5.7887 -2.0905 7.1409 17 7 6.7990 -2.6943 6.5520 18 14 6.0265 -1.2842 8.8091 19 1 5.1143 -1.9136 9.7976 20 1 7.4332 -1.4641 9.2499 21 1 5.7208 0.1654 8.7065 22 6 3.2330 -2.9235 4.6284 23 6 2.6990 -2.0593 3.4801 24 6 3.8229 -1.8352 2.4656 25 1 4.1868 -2.7964 2.1025 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1208 1.4459 -0.1415 31 1 1.5657 1.9956 -0.8108 32 1 1.7968 1.9139 0.9522 33 1 4.6889 -1.4711 -0.2152 34 1 3.8197 0.0749 -0.3834 35 1 6.2362 0.3562 0.2791 36 1 5.0966 1.0490 1.4572 37 1 6.8826 -0.2585 2.5886 38 1 6.4032 -1.7030 1.6641 39 1 6.3013 -1.3815 4.8123 40 1 5.9797 -2.8467 3.8498 41 1 7.6671 -2.7205 6.9839 42 1 3.4747 -3.9182 4.2540 43 1 2.4755 -3.0018 5.4083 44 1 1.8652 -2.5689 2.9971 45 1 2.3641 -1.0987 3.8715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021526995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:33 Heat of formation + Delta-G solvation = -31.497896 kcal Electronic energy + Delta-G solvation = -23973.474716 eV Core-core repulsion = 20797.586228 eV Total energy + Delta-G solvation = -3175.888488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82883 -39.30704 -37.37847 -35.71387 -34.25346 -34.01983 -31.84889 -30.82976 -28.12402 -27.22739 -26.59246 -24.57979 -23.88327 -23.18261 -21.43886 -21.11600 -19.55670 -18.72344 -17.86485 -17.08453 -16.78876 -16.37084 -15.67953 -15.50551 -15.47812 -15.38411 -15.01159 -14.86360 -14.17216 -13.87750 -13.70207 -13.54570 -13.46743 -13.19809 -13.09212 -12.86272 -12.77005 -12.64284 -12.44733 -12.21963 -12.16332 -12.07253 -11.91689 -11.89278 -11.70273 -11.57300 -11.38355 -11.02084 -10.60064 -10.04540 -9.45856 -8.64449 -7.91242 -5.39468 1.42932 1.45065 1.52665 1.71850 2.07200 2.47795 3.21272 3.51463 3.60559 3.86006 3.89413 3.93986 4.04488 4.11298 4.13334 4.27931 4.32382 4.47532 4.52074 4.58742 4.66056 4.73705 4.77371 4.85389 4.87744 4.92412 4.95691 4.97523 5.00374 5.06233 5.13413 5.14963 5.27899 5.35796 5.37162 5.38299 5.44409 5.47661 5.61359 5.68767 5.74053 6.36301 6.59119 7.11464 7.31426 7.80521 8.34801 9.14025 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024961 B = 0.005175 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.464254 B = 5409.123353 C = 5900.826706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.608 5.608 7 C 0.094 3.906 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.106 4.106 11 H 0.040 0.960 12 C 0.194 3.806 13 N -0.611 5.611 14 C -0.275 4.275 15 H 0.054 0.946 16 C -0.039 4.039 17 N -0.928 5.928 18 Si 0.965 3.035 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.280 1.280 22 C 0.136 3.864 23 C -0.091 4.091 24 C 0.163 3.837 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.003 0.997 41 H 0.253 0.747 42 H 0.013 0.987 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 7.786 -20.187 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 C -0.203 4.203 4 C 0.292 3.708 5 O -0.456 6.456 6 N -0.340 5.340 7 C -0.027 4.027 8 C -0.163 4.163 9 C -0.148 4.148 10 C -0.127 4.127 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.334 5.334 14 C -0.405 4.405 15 H 0.072 0.928 16 C -0.236 4.236 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.206 1.206 22 C 0.010 3.990 23 C -0.130 4.130 24 C 0.059 3.941 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.109 7.601 -19.663 21.691 hybrid contribution 0.337 -0.081 1.713 1.748 sum -4.772 7.520 -17.950 20.038 Atomic orbital electron populations 1.21608 0.92759 1.01967 1.02404 1.21400 0.98054 0.98017 0.95463 1.21971 1.02567 0.92995 1.02804 1.21549 0.81390 0.78500 0.89353 1.90729 1.57208 1.55524 1.42127 1.48364 1.07905 1.52885 1.24825 1.22287 0.89710 1.00646 0.90044 1.21891 0.98346 0.97937 0.98143 1.21472 0.96889 1.00538 0.95877 1.21969 0.96288 0.98114 0.96329 0.94100 1.20500 0.89587 0.94403 0.88663 1.44316 1.15896 1.69746 1.03471 1.19377 0.93618 1.41887 0.85662 0.92800 1.25804 0.96980 0.99561 1.01236 1.70166 1.01965 1.44195 1.40947 0.85395 0.76727 0.78680 0.79960 1.20162 1.21204 1.20631 1.21239 0.88844 0.93855 0.95090 1.22158 0.96156 0.99599 0.95091 1.20999 0.94051 0.93115 0.85918 0.91767 0.93985 0.89181 0.93454 0.86106 0.90146 0.88780 0.94282 0.89835 0.85998 0.87365 0.92357 0.92198 0.91307 0.93365 0.97900 0.93825 0.96933 0.93734 0.90861 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.55 71.98 0.62 -1.82 16 2 C -0.11 -1.97 2.41 -11.54 -0.03 -1.99 16 3 C -0.15 -2.10 8.83 71.98 0.64 -1.46 16 4 C 0.50 14.59 6.90 87.66 0.60 15.20 16 5 O -0.58 -22.05 11.53 -3.03 -0.03 -22.09 16 6 N -0.61 -16.99 2.97 -795.04 -2.36 -19.36 16 7 C 0.09 1.69 5.77 86.31 0.50 2.19 16 8 C -0.13 -2.46 6.06 30.68 0.19 -2.27 16 9 C -0.11 -3.16 5.24 30.58 0.16 -3.00 16 10 C -0.11 -4.12 2.21 -10.74 -0.02 -4.15 16 11 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 12 C 0.19 9.70 4.62 86.29 0.40 10.10 16 13 N -0.61 -33.40 2.98 -698.90 -2.08 -35.48 16 14 C -0.28 -16.31 9.52 84.03 0.80 -15.51 16 15 H 0.05 3.20 7.89 -2.91 -0.02 3.18 16 16 C -0.04 -2.29 4.85 84.86 0.41 -1.87 16 17 N -0.93 -56.05 11.50 21.65 0.25 -55.80 16 18 Si 0.97 46.48 29.59 68.60 2.03 48.51 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 C 0.14 6.55 6.50 86.42 0.56 7.11 16 23 C -0.09 -3.86 3.80 30.72 0.12 -3.75 16 24 C 0.16 5.91 2.64 45.06 0.12 6.03 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.04 0.97 7.97 -2.39 -0.02 0.95 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.12 1.49 7.61 -2.39 -0.02 1.47 16 30 H 0.08 0.94 5.53 -2.38 -0.01 0.92 16 31 H 0.09 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.04 0.75 8.13 -2.39 -0.02 0.73 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.40 3.96 -2.39 -0.01 1.39 16 35 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 2.69 6.35 -2.38 -0.02 2.67 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.04 2.17 7.93 -2.39 -0.02 2.15 16 44 H 0.07 3.08 6.47 -2.39 -0.02 3.06 16 45 H 0.04 1.99 7.14 -2.39 -0.02 1.97 16 Total: -1.00 -73.20 332.80 3.80 -69.39 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.95 Total: 10.04 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.06 Total: 4.79 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.20 Total: -110.64 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.03 Total: -22.09 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.20 3.80 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021526995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.895 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds