Wall clock time and date at job start Tue Mar 31 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47587 * 2 1 4 4 C 1.50707 * 109.47046 * 120.00340 * 2 1 3 5 5 O 1.21287 * 119.99890 * 260.69815 * 4 2 1 6 6 N 1.34775 * 120.00115 * 80.70221 * 4 2 1 7 7 C 1.46942 * 120.84412 * 354.26069 * 6 4 2 8 8 C 1.53150 * 109.01979 * 126.00127 * 7 6 4 9 9 C 1.53116 * 109.47495 * 54.08138 * 8 7 6 10 10 C 1.52859 * 109.34471 * 299.34342 * 9 8 7 11 11 H 1.09003 * 109.25345 * 303.28470 * 10 9 8 12 12 C 1.52768 * 110.20456 * 183.23711 * 10 9 8 13 13 N 1.46893 * 109.19423 * 292.64897 * 12 10 9 14 14 C 1.36939 * 120.77228 * 126.67540 * 13 12 10 15 15 H 1.07994 * 120.00339 * 332.39519 * 14 13 12 16 16 C 1.38812 * 119.99811 * 152.39959 * 14 13 12 17 17 N 1.31628 * 119.99950 * 347.11009 * 16 14 13 18 18 Si 1.86796 * 120.00263 * 167.11157 * 16 14 13 19 19 H 1.48503 * 109.47302 * 94.89687 * 18 16 14 20 20 H 1.48493 * 109.47496 * 214.89967 * 18 16 14 21 21 H 1.48500 * 109.47209 * 334.90005 * 18 16 14 22 22 C 1.46971 * 118.45227 * 306.65302 * 13 12 10 23 23 C 1.53092 * 108.61877 * 54.31510 * 22 13 12 24 24 C 1.47305 * 120.84235 * 174.28721 * 6 4 2 25 25 H 1.08997 * 110.67954 * 355.41537 * 24 6 4 26 26 H 1.09000 * 109.47356 * 293.46499 * 1 2 3 27 27 H 1.09007 * 109.47100 * 53.46212 * 1 2 3 28 28 H 1.08999 * 109.47296 * 173.46015 * 1 2 3 29 29 H 1.09000 * 109.47529 * 239.99669 * 2 1 3 30 30 H 1.09000 * 109.47340 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46950 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.46793 * 60.00082 * 3 2 1 33 33 H 1.08994 * 109.54860 * 245.86159 * 7 6 4 34 34 H 1.08995 * 109.54740 * 6.05083 * 7 6 4 35 35 H 1.09005 * 109.47003 * 294.07887 * 8 7 6 36 36 H 1.08999 * 109.46951 * 174.08703 * 8 7 6 37 37 H 1.09005 * 109.48928 * 179.38538 * 9 8 7 38 38 H 1.08987 * 109.49533 * 59.30774 * 9 8 7 39 39 H 1.09005 * 109.52036 * 52.56527 * 12 10 9 40 40 H 1.09002 * 109.51849 * 172.73550 * 12 10 9 41 41 H 0.97001 * 119.99857 * 179.97438 * 17 16 14 42 42 H 1.08992 * 109.61686 * 174.05737 * 22 13 12 43 43 H 1.09002 * 109.61533 * 294.58304 * 22 13 12 44 44 H 1.09005 * 109.44778 * 64.68953 * 23 22 13 45 45 H 1.08997 * 109.45653 * 184.64476 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.3944 -0.0704 2.1949 6 7 2.0791 -2.0571 1.2592 7 6 1.5299 -2.8538 0.1533 8 6 2.6094 -3.8145 -0.3539 9 6 3.1480 -4.6412 0.8169 10 6 3.7637 -3.7052 1.8568 11 1 4.5396 -3.1031 1.3838 12 6 4.3792 -4.5148 2.9967 13 7 3.3084 -5.1873 3.7444 14 6 3.3477 -6.5388 3.9614 15 1 3.8637 -7.1829 3.2648 16 6 2.7242 -7.0811 5.0768 17 7 2.3182 -6.2947 6.0512 18 14 2.4611 -8.9266 5.1950 19 1 3.5781 -9.5379 5.9592 20 1 1.1778 -9.2002 5.8901 21 1 2.4185 -9.5090 3.8297 22 6 2.1943 -4.3758 4.2544 23 6 1.5881 -3.5901 3.0887 24 6 2.6816 -2.7677 2.4002 25 1 3.1186 -2.0615 3.1061 26 1 -0.3634 0.4092 0.9427 27 1 -0.3634 0.6119 -0.8257 28 1 -0.3634 -1.0210 -0.1170 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.6708 -3.4242 0.5062 34 1 1.2206 -2.1912 -0.6550 35 1 3.4235 -3.2433 -0.8003 36 1 2.1803 -4.4808 -1.1022 37 1 3.9087 -5.3327 0.4543 38 1 2.3321 -5.2031 1.2712 39 1 5.0611 -5.2602 2.5873 40 1 4.9254 -3.8477 3.6637 41 1 1.8822 -6.6736 6.8304 42 1 1.4366 -5.0271 4.6899 43 1 2.5627 -3.6825 5.0105 44 1 1.1504 -4.2846 2.3716 45 1 0.8141 -2.9213 3.4651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021526998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:38 Heat of formation + Delta-G solvation = -26.446139 kcal Electronic energy + Delta-G solvation = -23892.059972 eV Core-core repulsion = 20716.390544 eV Total energy + Delta-G solvation = -3175.669427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45637 -38.26116 -35.54613 -34.49049 -32.72544 -32.20128 -29.98215 -29.67912 -27.29155 -25.56862 -25.27408 -23.19889 -22.22917 -21.85210 -21.06509 -18.67660 -17.81155 -17.23121 -16.66149 -15.70102 -15.26471 -14.86365 -14.57906 -14.13020 -13.95649 -13.69445 -13.58480 -13.22851 -12.98815 -12.72601 -12.44630 -12.26007 -12.20645 -12.18564 -11.99175 -11.39396 -11.29696 -11.16686 -11.05944 -10.86020 -10.74291 -10.61219 -10.48383 -10.16267 -10.07061 -9.92072 -9.69300 -9.50676 -9.26669 -8.52292 -8.17344 -6.65580 -5.76412 -3.21156 2.84162 3.21487 3.37226 3.44225 3.45572 4.49104 4.50164 4.74612 4.86537 4.92212 5.12282 5.15801 5.26285 5.39026 5.41519 5.47069 5.50446 5.56097 5.62410 5.68545 5.70219 5.74387 5.80042 5.98349 6.04616 6.05731 6.12176 6.14849 6.25365 6.33667 6.40240 6.48428 6.58859 6.66889 6.83721 6.84584 6.97565 7.00065 7.40812 7.68987 7.74956 7.80512 8.42129 8.46813 9.22466 9.85255 10.42143 11.31131 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.004750 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.895736 B = 5893.559973 C = 6110.515840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.515 3.485 5 O -0.546 6.546 6 N -0.605 5.605 7 C 0.106 3.894 8 C -0.134 4.134 9 C -0.107 4.107 10 C -0.107 4.107 11 H 0.056 0.944 12 C 0.152 3.848 13 N -0.589 5.589 14 C -0.247 4.247 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.905 5.905 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.170 3.830 23 C -0.147 4.147 24 C 0.153 3.847 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.098 0.902 43 H 0.017 0.983 44 H 0.060 0.940 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 9.242 -15.168 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.190 4.190 4 C 0.303 3.697 5 O -0.424 6.424 6 N -0.337 5.337 7 C -0.018 4.018 8 C -0.172 4.172 9 C -0.144 4.144 10 C -0.128 4.128 11 H 0.074 0.926 12 C 0.024 3.976 13 N -0.311 5.311 14 C -0.376 4.376 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.550 5.550 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.044 3.956 23 C -0.187 4.187 24 C 0.051 3.949 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.903 9.517 -14.492 17.579 hybrid contribution -0.147 -1.008 0.047 1.020 sum -3.049 8.508 -14.446 17.040 Atomic orbital electron populations 1.21787 0.92899 1.02535 1.02832 1.21309 0.97682 0.97786 0.96966 1.21620 1.01330 0.93909 1.02137 1.20607 0.78005 0.81995 0.89118 1.90674 1.49176 1.65601 1.36927 1.48533 1.58887 1.05103 1.21189 1.21752 0.96651 0.94247 0.89104 1.21955 0.98423 0.98189 0.98676 1.21466 1.01370 0.97301 0.94281 1.21825 0.96764 0.96513 0.97720 0.92598 1.20800 0.90962 0.94463 0.91333 1.44037 1.19664 1.04330 1.63096 1.19184 1.32489 0.82215 1.03732 0.91657 1.25057 1.02045 0.97656 0.95011 1.69979 1.43977 1.33529 1.07557 0.86267 0.77378 0.85466 0.77575 1.21528 1.21644 1.20494 1.20856 0.91481 0.92785 0.90518 1.22584 0.97160 0.98411 1.00520 1.21348 0.93926 0.93025 0.86580 0.88952 0.91959 0.91594 0.92006 0.89226 0.92453 0.92270 0.91573 0.91225 0.90259 0.92228 0.91261 0.92355 0.90078 0.92511 0.96341 0.93638 0.88356 0.96447 0.92130 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.95 37.15 0.33 -1.00 16 2 C -0.12 -1.28 2.39 -91.77 -0.22 -1.49 16 3 C -0.13 -1.39 8.67 37.16 0.32 -1.07 16 4 C 0.51 8.00 6.85 -10.98 -0.08 7.92 16 5 O -0.55 -10.69 15.54 5.55 0.09 -10.60 16 6 N -0.61 -9.20 2.66 -164.88 -0.44 -9.64 16 7 C 0.11 1.26 5.22 -3.72 -0.02 1.25 16 8 C -0.13 -1.61 6.08 -26.59 -0.16 -1.77 16 9 C -0.11 -1.66 4.86 -26.74 -0.13 -1.79 16 10 C -0.11 -1.87 2.45 -90.74 -0.22 -2.09 16 11 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 12 C 0.15 3.15 5.90 -3.95 -0.02 3.13 16 13 N -0.59 -14.36 2.65 -172.63 -0.46 -14.82 16 14 C -0.25 -6.57 9.63 -15.06 -0.14 -6.72 16 15 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 16 C 0.00 0.01 5.04 -17.43 -0.09 -0.08 16 17 N -0.91 -26.05 10.89 55.49 0.60 -25.44 16 18 Si 0.90 21.41 29.57 -169.99 -5.03 16.38 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.17 4.07 5.32 -3.74 -0.02 4.05 16 23 C -0.15 -2.88 5.02 -26.60 -0.13 -3.01 16 24 C 0.15 2.78 2.62 -67.33 -0.18 2.61 16 25 H 0.09 1.92 7.13 -51.93 -0.37 1.55 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.54 6.77 -51.93 -0.35 0.19 16 29 H 0.09 0.83 6.81 -51.93 -0.35 0.47 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 33 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 34 H 0.08 0.74 4.83 -51.93 -0.25 0.48 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.46 6.15 -51.94 -0.32 1.14 16 39 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.10 2.63 5.84 -51.93 -0.30 2.33 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.16 5.32 -51.93 -0.28 0.89 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -30.39 333.29 -8.59 -38.98 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.62 Total: 0.18 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.76 Total: -0.07 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.29 Total: -49.90 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.39 -8.59 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021526998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.538 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds