Wall clock time and date at job start Tue Mar 31 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47587 * 2 1 4 4 C 1.50707 * 109.47046 * 120.00340 * 2 1 3 5 5 O 1.21287 * 119.99890 * 260.69815 * 4 2 1 6 6 N 1.34775 * 120.00115 * 80.70221 * 4 2 1 7 7 C 1.46942 * 120.84412 * 354.26069 * 6 4 2 8 8 C 1.53150 * 109.01979 * 126.00127 * 7 6 4 9 9 C 1.53116 * 109.47495 * 54.08138 * 8 7 6 10 10 C 1.52859 * 109.34471 * 299.34342 * 9 8 7 11 11 H 1.09003 * 109.25345 * 303.28470 * 10 9 8 12 12 C 1.52768 * 110.20456 * 183.23711 * 10 9 8 13 13 N 1.46893 * 109.19423 * 292.64897 * 12 10 9 14 14 C 1.36939 * 120.77228 * 126.67540 * 13 12 10 15 15 H 1.07994 * 120.00339 * 332.39519 * 14 13 12 16 16 C 1.38812 * 119.99811 * 152.39959 * 14 13 12 17 17 N 1.31628 * 119.99950 * 347.11009 * 16 14 13 18 18 Si 1.86796 * 120.00263 * 167.11157 * 16 14 13 19 19 H 1.48503 * 109.47302 * 94.89687 * 18 16 14 20 20 H 1.48493 * 109.47496 * 214.89967 * 18 16 14 21 21 H 1.48500 * 109.47209 * 334.90005 * 18 16 14 22 22 C 1.46971 * 118.45227 * 306.65302 * 13 12 10 23 23 C 1.53092 * 108.61877 * 54.31510 * 22 13 12 24 24 C 1.47305 * 120.84235 * 174.28721 * 6 4 2 25 25 H 1.08997 * 110.67954 * 355.41537 * 24 6 4 26 26 H 1.09000 * 109.47356 * 293.46499 * 1 2 3 27 27 H 1.09007 * 109.47100 * 53.46212 * 1 2 3 28 28 H 1.08999 * 109.47296 * 173.46015 * 1 2 3 29 29 H 1.09000 * 109.47529 * 239.99669 * 2 1 3 30 30 H 1.09000 * 109.47340 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46950 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.46793 * 60.00082 * 3 2 1 33 33 H 1.08994 * 109.54860 * 245.86159 * 7 6 4 34 34 H 1.08995 * 109.54740 * 6.05083 * 7 6 4 35 35 H 1.09005 * 109.47003 * 294.07887 * 8 7 6 36 36 H 1.08999 * 109.46951 * 174.08703 * 8 7 6 37 37 H 1.09005 * 109.48928 * 179.38538 * 9 8 7 38 38 H 1.08987 * 109.49533 * 59.30774 * 9 8 7 39 39 H 1.09005 * 109.52036 * 52.56527 * 12 10 9 40 40 H 1.09002 * 109.51849 * 172.73550 * 12 10 9 41 41 H 0.97001 * 119.99857 * 179.97438 * 17 16 14 42 42 H 1.08992 * 109.61686 * 174.05737 * 22 13 12 43 43 H 1.09002 * 109.61533 * 294.58304 * 22 13 12 44 44 H 1.09005 * 109.44778 * 64.68953 * 23 22 13 45 45 H 1.08997 * 109.45653 * 184.64476 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.3944 -0.0704 2.1949 6 7 2.0791 -2.0571 1.2592 7 6 1.5299 -2.8538 0.1533 8 6 2.6094 -3.8145 -0.3539 9 6 3.1480 -4.6412 0.8169 10 6 3.7637 -3.7052 1.8568 11 1 4.5396 -3.1031 1.3838 12 6 4.3792 -4.5148 2.9967 13 7 3.3084 -5.1873 3.7444 14 6 3.3477 -6.5388 3.9614 15 1 3.8637 -7.1829 3.2648 16 6 2.7242 -7.0811 5.0768 17 7 2.3182 -6.2947 6.0512 18 14 2.4611 -8.9266 5.1950 19 1 3.5781 -9.5379 5.9592 20 1 1.1778 -9.2002 5.8901 21 1 2.4185 -9.5090 3.8297 22 6 2.1943 -4.3758 4.2544 23 6 1.5881 -3.5901 3.0887 24 6 2.6816 -2.7677 2.4002 25 1 3.1186 -2.0615 3.1061 26 1 -0.3634 0.4092 0.9427 27 1 -0.3634 0.6119 -0.8257 28 1 -0.3634 -1.0210 -0.1170 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.6708 -3.4242 0.5062 34 1 1.2206 -2.1912 -0.6550 35 1 3.4235 -3.2433 -0.8003 36 1 2.1803 -4.4808 -1.1022 37 1 3.9087 -5.3327 0.4543 38 1 2.3321 -5.2031 1.2712 39 1 5.0611 -5.2602 2.5873 40 1 4.9254 -3.8477 3.6637 41 1 1.8822 -6.6736 6.8304 42 1 1.4366 -5.0271 4.6899 43 1 2.5627 -3.6825 5.0105 44 1 1.1504 -4.2846 2.3716 45 1 0.8141 -2.9213 3.4651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021526998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:37 Heat of formation + Delta-G solvation = -44.012030 kcal Electronic energy + Delta-G solvation = -23892.821686 eV Core-core repulsion = 20716.390544 eV Total energy + Delta-G solvation = -3176.431141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73970 -39.67456 -37.11462 -35.54765 -34.25413 -33.71585 -31.74949 -31.24105 -28.07904 -27.30503 -26.58684 -24.66132 -23.58904 -23.31322 -22.55363 -19.92239 -19.35503 -18.52958 -18.26652 -17.13777 -16.73152 -16.25309 -16.10713 -15.57285 -15.18032 -15.11181 -14.85814 -14.75496 -14.30820 -14.14994 -13.79505 -13.54339 -13.49039 -13.12442 -13.01018 -12.97682 -12.84711 -12.63167 -12.35066 -12.25410 -12.10266 -12.03879 -11.93351 -11.79565 -11.69858 -11.42897 -11.35141 -11.05523 -10.56753 -10.55315 -9.51855 -8.68518 -7.84567 -5.32714 1.48215 1.49110 1.59124 1.65858 2.02263 2.51987 3.31335 3.48721 3.63118 3.79861 3.92692 3.94439 4.01217 4.09603 4.14708 4.26792 4.33695 4.43620 4.53637 4.59662 4.69557 4.76423 4.81603 4.86489 4.88899 4.92355 4.93611 4.94861 4.99548 5.03709 5.08729 5.15469 5.26430 5.31956 5.34096 5.37998 5.42838 5.62925 5.63614 5.65592 5.73895 6.39963 6.54510 7.14542 7.22388 7.84333 8.38215 9.21596 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.004750 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.895736 B = 5893.559973 C = 6110.515840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.132 4.132 4 C 0.506 3.494 5 O -0.598 6.598 6 N -0.603 5.603 7 C 0.099 3.901 8 C -0.125 4.125 9 C -0.103 4.103 10 C -0.096 4.096 11 H 0.070 0.930 12 C 0.148 3.852 13 N -0.600 5.600 14 C -0.252 4.252 15 H 0.073 0.927 16 C -0.055 4.055 17 N -0.941 5.941 18 Si 0.970 3.030 19 H -0.289 1.289 20 H -0.295 1.295 21 H -0.264 1.264 22 C 0.179 3.821 23 C -0.128 4.128 24 C 0.159 3.841 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.001 0.999 41 H 0.248 0.752 42 H 0.068 0.932 43 H -0.017 1.017 44 H 0.071 0.929 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 9.027 -19.310 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.189 4.189 4 C 0.296 3.704 5 O -0.479 6.479 6 N -0.334 5.334 7 C -0.022 4.022 8 C -0.163 4.163 9 C -0.140 4.140 10 C -0.117 4.117 11 H 0.088 0.912 12 C 0.022 3.978 13 N -0.323 5.323 14 C -0.382 4.382 15 H 0.091 0.909 16 C -0.249 4.249 17 N -0.588 5.588 18 Si 0.798 3.202 19 H -0.216 1.216 20 H -0.222 1.222 21 H -0.189 1.189 22 C 0.052 3.948 23 C -0.167 4.167 24 C 0.056 3.944 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.001 0.999 44 H 0.090 0.910 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.555 9.299 -18.695 21.180 hybrid contribution 0.114 -0.894 1.374 1.643 sum -3.441 8.405 -17.321 19.558 Atomic orbital electron populations 1.21815 0.91314 1.03688 1.02990 1.21395 0.98763 0.97467 0.95188 1.21643 1.00715 0.93894 1.02692 1.21612 0.76922 0.81809 0.90073 1.90656 1.51350 1.66632 1.39229 1.48544 1.58534 1.05437 1.20931 1.22080 0.96507 0.94735 0.88873 1.21920 0.98777 0.98128 0.97453 1.21404 1.00566 0.97179 0.94874 1.21660 0.96762 0.96367 0.96885 0.91193 1.20941 0.90430 0.94571 0.91894 1.44206 1.20712 1.04077 1.63351 1.19546 1.31730 0.83350 1.03545 0.90940 1.25840 1.02412 1.01839 0.94816 1.70171 1.45241 1.35297 1.08126 0.85215 0.76626 0.80405 0.77941 1.21642 1.22164 1.18892 1.20570 0.90838 0.91870 0.91493 1.22295 0.97298 0.98122 0.99025 1.20933 0.93605 0.92403 0.87480 0.92454 0.94085 0.88556 0.91021 0.86021 0.93500 0.88867 0.93811 0.91297 0.86331 0.90860 0.88258 0.91799 0.92627 0.91790 0.98091 0.94243 0.91350 0.99899 0.91008 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.95 71.98 0.64 -1.45 16 2 C -0.11 -1.99 2.39 -11.54 -0.03 -2.02 16 3 C -0.13 -2.46 8.67 71.98 0.62 -1.83 16 4 C 0.51 15.08 6.85 87.66 0.60 15.68 16 5 O -0.60 -23.97 15.54 -3.05 -0.05 -24.01 16 6 N -0.60 -17.32 2.66 -793.96 -2.11 -19.43 16 7 C 0.10 1.97 5.22 86.35 0.45 2.43 16 8 C -0.12 -2.42 6.08 30.68 0.19 -2.23 16 9 C -0.10 -2.95 4.86 30.59 0.15 -2.80 16 10 C -0.10 -3.28 2.45 -10.87 -0.03 -3.31 16 11 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 12 C 0.15 6.28 5.90 86.23 0.51 6.79 16 13 N -0.60 -30.23 2.65 -700.07 -1.85 -32.09 16 14 C -0.25 -13.61 9.63 84.03 0.81 -12.80 16 15 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 16 C -0.05 -3.04 5.04 84.86 0.43 -2.61 16 17 N -0.94 -56.43 10.89 21.65 0.24 -56.19 16 18 Si 0.97 44.58 29.57 68.60 2.03 46.61 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 C 0.18 9.06 5.32 86.32 0.46 9.52 16 23 C -0.13 -5.14 5.02 30.68 0.15 -4.99 16 24 C 0.16 5.87 2.62 44.94 0.12 5.98 16 25 H 0.06 2.52 7.13 -2.39 -0.02 2.50 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.07 0.94 6.77 -2.39 -0.02 0.92 16 29 H 0.12 1.53 6.81 -2.39 -0.02 1.51 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 1.00 7.89 -2.39 -0.02 0.99 16 33 H 0.07 1.43 7.25 -2.39 -0.02 1.42 16 34 H 0.12 1.48 4.83 -2.39 -0.01 1.47 16 35 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.06 1.90 6.15 -2.39 -0.01 1.89 16 39 H 0.06 2.58 7.93 -2.38 -0.02 2.56 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.07 3.88 5.84 -2.39 -0.01 3.86 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.07 2.74 5.32 -2.38 -0.01 2.73 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -70.81 333.29 4.28 -66.52 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.96 Total: 12.24 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.08 Total: 6.35 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.73 Total: -107.71 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.81 4.28 -66.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021526998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.510 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds