Wall clock time and date at job start Tue Mar 31 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47652 * 2 1 4 4 C 1.53007 * 109.47014 * 239.99831 * 2 1 3 5 5 C 1.53001 * 109.46938 * 120.00341 * 2 1 3 6 6 H 1.09002 * 115.55911 * 154.29213 * 5 2 1 7 7 C 1.53000 * 117.50223 * 8.60523 * 5 2 1 8 8 C 1.52997 * 117.49889 * 299.97785 * 5 2 1 9 9 H 1.08999 * 117.49685 * 0.02562 * 8 5 2 10 10 C 1.50696 * 117.52180 * 214.96954 * 8 5 2 11 11 O 1.21290 * 119.99779 * 359.97438 * 10 8 5 12 12 N 1.34773 * 120.00368 * 179.97438 * 10 8 5 13 13 C 1.46501 * 120.00348 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.84748 * 25.34016 * 13 12 10 15 15 C 1.53783 * 113.61338 * 156.52939 * 13 12 10 16 16 C 1.53779 * 87.07681 * 139.98435 * 15 13 12 17 17 H 1.08995 * 113.61740 * 89.20535 * 16 15 13 18 18 N 1.46505 * 113.61384 * 220.01943 * 16 15 13 19 19 C 1.36935 * 120.00063 * 205.00125 * 18 16 15 20 20 H 1.08002 * 120.00217 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00057 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86812 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47038 * 59.99706 * 23 21 19 25 25 H 1.48499 * 109.46882 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46638 * 299.99834 * 23 21 19 27 27 C 1.53775 * 113.61635 * 254.13928 * 13 12 10 28 28 H 1.09000 * 109.46886 * 299.99979 * 1 2 3 29 29 H 1.08997 * 109.47229 * 59.99388 * 1 2 3 30 30 H 1.08994 * 109.47600 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47441 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47344 * 300.00100 * 3 2 1 33 33 H 1.09000 * 109.46958 * 60.00065 * 3 2 1 34 34 H 1.09003 * 109.47031 * 300.00522 * 4 2 1 35 35 H 1.08997 * 109.46787 * 59.99869 * 4 2 1 36 36 H 1.08994 * 109.47418 * 180.02562 * 4 2 1 37 37 H 1.08990 * 117.49990 * 145.01974 * 7 5 2 38 38 H 1.09004 * 117.49237 * 359.97438 * 7 5 2 39 39 H 0.97001 * 119.99539 * 0.02562 * 12 10 8 40 40 H 1.08996 * 113.61475 * 254.53331 * 15 13 12 41 41 H 1.08999 * 113.61385 * 25.35662 * 15 13 12 42 42 H 0.96997 * 119.99873 * 25.00294 * 18 16 15 43 43 H 0.97003 * 119.99791 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.61630 * 334.56911 * 27 13 12 45 45 H 1.09005 * 113.61210 * 105.47245 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 3.0320 -1.1648 1.1642 7 6 1.0103 -1.4539 2.1118 8 6 1.6360 -0.1494 2.6096 9 1 1.0067 0.7405 2.6146 10 6 2.6398 -0.2422 3.7298 11 8 3.7207 -0.7565 3.5344 12 7 2.3364 0.2462 4.9487 13 6 3.3124 0.1564 6.0376 14 1 4.3407 0.1006 5.6806 15 6 3.1001 1.2041 7.1431 16 6 3.4439 0.0950 8.1512 17 1 4.5083 0.0223 8.3743 18 7 2.6105 0.1180 9.3559 19 6 3.0806 -0.4201 10.5241 20 1 4.0659 -0.8611 10.5575 21 6 2.2908 -0.3988 11.6653 22 7 1.0902 0.1391 11.6249 23 14 2.9324 -1.1322 13.2592 24 1 4.1715 -0.4227 13.6670 25 1 1.9051 -0.9838 14.3211 26 1 3.2307 -2.5727 13.0562 27 6 2.9663 -0.9114 7.0886 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6765 -1.7490 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7218 -1.2491 37 1 1.3250 -2.3792 2.5943 38 1 -0.0305 -1.4216 1.7895 39 1 1.4718 0.6571 5.1050 40 1 3.8277 2.0154 7.1214 41 1 2.0722 1.5593 7.2164 42 1 1.7257 0.5144 9.3260 43 1 0.5381 0.1537 12.4224 44 1 1.9015 -1.1368 7.1479 45 1 3.5862 -1.8056 7.0230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022416500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:00 Heat of formation + Delta-G solvation = 0.721501 kcal Electronic energy + Delta-G solvation = -21701.907500 eV Core-core repulsion = 18527.416150 eV Total energy + Delta-G solvation = -3174.491350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36273 -38.92489 -37.56692 -34.06670 -34.00711 -32.61079 -29.88033 -27.72642 -27.55730 -25.41174 -25.11718 -23.87568 -23.08891 -21.68440 -20.20888 -19.19514 -18.61796 -17.38818 -17.06925 -16.20361 -15.72532 -14.94017 -14.72525 -14.43681 -14.36607 -14.20925 -13.92361 -13.10805 -13.01239 -12.85115 -12.79521 -12.61664 -12.11105 -11.99889 -11.91939 -11.88709 -11.45784 -11.30228 -11.25459 -10.92074 -10.85591 -10.64501 -10.51992 -10.41535 -10.31723 -10.17047 -10.07309 -9.71936 -9.52371 -8.90793 -8.71585 -6.99101 -5.80652 -3.09518 2.56089 3.24355 3.42957 3.47344 3.48369 3.69434 4.33345 4.46874 4.57413 4.59567 4.75044 4.85305 4.90266 5.03504 5.07585 5.24396 5.25211 5.34525 5.37317 5.38837 5.46073 5.47590 5.50537 5.62801 5.65906 5.76582 5.77562 5.86839 5.88012 5.95832 5.98370 6.07166 6.13217 6.16684 6.25436 6.31712 6.54028 6.61812 6.76939 7.07442 7.67865 7.68979 8.36290 8.38064 9.49168 10.05851 10.40542 11.41717 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043243 B = 0.002629 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.343883 B =10646.909393 C =10746.490656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.107 4.107 6 H 0.116 0.884 7 C -0.153 4.153 8 C -0.187 4.187 9 H 0.121 0.879 10 C 0.540 3.460 11 O -0.547 6.547 12 N -0.710 5.710 13 C 0.117 3.883 14 H 0.107 0.893 15 C -0.158 4.158 16 C 0.169 3.831 17 H 0.079 0.921 18 N -0.710 5.710 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.176 4.176 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 1.592 -24.696 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.126 4.126 6 H 0.134 0.866 7 C -0.190 4.190 8 C -0.208 4.208 9 H 0.138 0.862 10 C 0.327 3.673 11 O -0.425 6.425 12 N -0.359 5.359 13 C 0.013 3.987 14 H 0.125 0.875 15 C -0.198 4.198 16 C 0.056 3.944 17 H 0.097 0.903 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.218 4.218 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.017 1.165 -24.621 24.669 hybrid contribution -0.525 -0.031 1.088 1.209 sum -1.542 1.134 -23.532 23.610 Atomic orbital electron populations 1.22031 0.94603 1.01957 1.01800 1.20106 0.95276 0.95222 0.93449 1.21851 1.01421 0.94893 1.01580 1.21832 1.01203 1.00231 0.96290 1.22429 1.00196 1.01176 0.88800 0.86564 1.23209 0.99194 0.94362 1.02280 1.22287 1.02836 1.00213 0.95507 0.86162 1.19671 0.87167 0.77535 0.82944 1.90673 1.24279 1.44616 1.82974 1.45988 1.19168 1.60679 1.10091 1.22487 0.93373 0.98624 0.84241 0.87483 1.23851 1.02132 0.97895 0.95930 1.21380 0.95546 0.92014 0.85443 0.90253 1.42347 1.17204 1.69741 1.05500 1.19274 0.99773 1.30857 0.87664 0.91041 1.24767 0.96475 1.01472 0.98165 1.69649 1.09637 1.50039 1.28840 0.86248 0.77631 0.78953 0.83247 1.21184 1.21678 1.21193 1.24354 1.01941 0.98420 0.97113 0.92473 0.92572 0.92095 0.92414 0.92685 0.92576 0.92461 0.92596 0.92451 0.88390 0.87314 0.76621 0.91524 0.89975 0.78098 0.93398 0.90237 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.07 37.15 0.26 -0.68 16 2 C -0.04 -0.30 0.88 -154.51 -0.14 -0.44 16 3 C -0.14 -1.06 8.31 37.15 0.31 -0.75 16 4 C -0.14 -0.95 8.46 37.16 0.31 -0.64 16 5 C -0.11 -1.03 4.66 -90.62 -0.42 -1.45 16 6 H 0.12 1.35 7.64 -51.93 -0.40 0.95 16 7 C -0.15 -1.40 9.27 -26.73 -0.25 -1.65 16 8 C -0.19 -1.91 5.04 -91.77 -0.46 -2.38 16 9 H 0.12 1.01 7.07 -51.93 -0.37 0.64 16 10 C 0.54 7.55 7.61 -10.99 -0.08 7.47 16 11 O -0.55 -9.72 15.88 5.55 0.09 -9.63 16 12 N -0.71 -9.42 5.36 -53.02 -0.28 -9.71 16 13 C 0.12 1.81 4.21 -67.12 -0.28 1.53 16 14 H 0.11 1.74 7.50 -51.93 -0.39 1.35 16 15 C -0.16 -2.52 7.58 -25.92 -0.20 -2.71 16 16 C 0.17 3.32 4.48 -67.03 -0.30 3.02 16 17 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 18 N -0.71 -17.61 5.40 -52.55 -0.28 -17.89 16 19 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.18 -3.15 7.69 -25.83 -0.20 -3.35 16 28 H 0.06 0.36 7.07 -51.93 -0.37 0.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.37 6.97 -51.93 -0.36 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.43 7.29 -51.93 -0.38 0.05 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.11 0.79 5.85 -51.93 -0.30 0.49 16 39 H 0.40 4.39 8.71 -40.82 -0.36 4.04 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 42 H 0.38 10.04 7.92 -40.82 -0.32 9.71 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -31.57 361.09 -8.89 -40.46 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -7.86 Total: 10.68 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.69 Total: -9.41 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.16 Total: -54.84 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.57 -8.89 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022416500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.182 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds