Wall clock time and date at job start Tue Mar 31 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47652 * 2 1 4 4 C 1.53007 * 109.47014 * 239.99831 * 2 1 3 5 5 C 1.53001 * 109.46938 * 120.00341 * 2 1 3 6 6 H 1.09002 * 115.55911 * 154.29213 * 5 2 1 7 7 C 1.53000 * 117.50223 * 8.60523 * 5 2 1 8 8 C 1.52997 * 117.49889 * 299.97785 * 5 2 1 9 9 H 1.08999 * 117.49685 * 0.02562 * 8 5 2 10 10 C 1.50696 * 117.52180 * 214.96954 * 8 5 2 11 11 O 1.21290 * 119.99779 * 359.97438 * 10 8 5 12 12 N 1.34773 * 120.00368 * 179.97438 * 10 8 5 13 13 C 1.46501 * 120.00348 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.84748 * 25.34016 * 13 12 10 15 15 C 1.53783 * 113.61338 * 156.52939 * 13 12 10 16 16 C 1.53779 * 87.07681 * 139.98435 * 15 13 12 17 17 H 1.08995 * 113.61740 * 89.20535 * 16 15 13 18 18 N 1.46505 * 113.61384 * 220.01943 * 16 15 13 19 19 C 1.36935 * 120.00063 * 205.00125 * 18 16 15 20 20 H 1.08002 * 120.00217 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00057 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86812 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47038 * 59.99706 * 23 21 19 25 25 H 1.48499 * 109.46882 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46638 * 299.99834 * 23 21 19 27 27 C 1.53775 * 113.61635 * 254.13928 * 13 12 10 28 28 H 1.09000 * 109.46886 * 299.99979 * 1 2 3 29 29 H 1.08997 * 109.47229 * 59.99388 * 1 2 3 30 30 H 1.08994 * 109.47600 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47441 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47344 * 300.00100 * 3 2 1 33 33 H 1.09000 * 109.46958 * 60.00065 * 3 2 1 34 34 H 1.09003 * 109.47031 * 300.00522 * 4 2 1 35 35 H 1.08997 * 109.46787 * 59.99869 * 4 2 1 36 36 H 1.08994 * 109.47418 * 180.02562 * 4 2 1 37 37 H 1.08990 * 117.49990 * 145.01974 * 7 5 2 38 38 H 1.09004 * 117.49237 * 359.97438 * 7 5 2 39 39 H 0.97001 * 119.99539 * 0.02562 * 12 10 8 40 40 H 1.08996 * 113.61475 * 254.53331 * 15 13 12 41 41 H 1.08999 * 113.61385 * 25.35662 * 15 13 12 42 42 H 0.96997 * 119.99873 * 25.00294 * 18 16 15 43 43 H 0.97003 * 119.99791 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.61630 * 334.56911 * 27 13 12 45 45 H 1.09005 * 113.61210 * 105.47245 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 3.0320 -1.1648 1.1642 7 6 1.0103 -1.4539 2.1118 8 6 1.6360 -0.1494 2.6096 9 1 1.0067 0.7405 2.6146 10 6 2.6398 -0.2422 3.7298 11 8 3.7207 -0.7565 3.5344 12 7 2.3364 0.2462 4.9487 13 6 3.3124 0.1564 6.0376 14 1 4.3407 0.1006 5.6806 15 6 3.1001 1.2041 7.1431 16 6 3.4439 0.0950 8.1512 17 1 4.5083 0.0223 8.3743 18 7 2.6105 0.1180 9.3559 19 6 3.0806 -0.4201 10.5241 20 1 4.0659 -0.8611 10.5575 21 6 2.2908 -0.3988 11.6653 22 7 1.0902 0.1391 11.6249 23 14 2.9324 -1.1322 13.2592 24 1 4.1715 -0.4227 13.6670 25 1 1.9051 -0.9838 14.3211 26 1 3.2307 -2.5727 13.0562 27 6 2.9663 -0.9114 7.0886 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6765 -1.7490 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7218 -1.2491 37 1 1.3250 -2.3792 2.5943 38 1 -0.0305 -1.4216 1.7895 39 1 1.4718 0.6571 5.1050 40 1 3.8277 2.0154 7.1214 41 1 2.0722 1.5593 7.2164 42 1 1.7257 0.5144 9.3260 43 1 0.5381 0.1537 12.4224 44 1 1.9015 -1.1368 7.1479 45 1 3.5862 -1.8056 7.0230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022416500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:58 Heat of formation + Delta-G solvation = -18.742105 kcal Electronic energy + Delta-G solvation = -21702.751506 eV Core-core repulsion = 18527.416150 eV Total energy + Delta-G solvation = -3175.335355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.39961 -40.04937 -38.73826 -35.78153 -34.77534 -34.15141 -31.80443 -28.25907 -28.10147 -26.84038 -26.53929 -25.48747 -23.80441 -23.09924 -21.37574 -20.61385 -19.29734 -19.16212 -18.26335 -17.55597 -16.53775 -16.44701 -16.15664 -15.71587 -15.60386 -14.98257 -14.94865 -14.66239 -14.47191 -13.76870 -13.70403 -13.41766 -13.32845 -13.16620 -13.14703 -12.80041 -12.58359 -12.46194 -12.29197 -12.19934 -12.10175 -12.03799 -11.93580 -11.76834 -11.53446 -11.46937 -11.17405 -10.92121 -10.88309 -10.71855 -9.99025 -8.99897 -7.96031 -5.24287 1.47531 1.48937 1.50273 1.56049 2.17241 2.56590 2.87214 3.35251 3.58474 3.68140 3.77023 3.80765 3.88072 3.95765 4.00480 4.14233 4.26962 4.27841 4.29515 4.32830 4.62230 4.69937 4.79257 4.84048 4.85038 4.86485 4.88345 4.96674 5.00664 5.10489 5.12340 5.13435 5.13870 5.21374 5.24636 5.37728 5.41118 5.50098 5.51682 5.56607 5.67144 6.26284 6.60211 7.26819 7.32883 8.08055 8.32015 9.26851 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043243 B = 0.002629 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.343883 B =10646.909393 C =10746.490656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.107 4.107 6 H 0.090 0.910 7 C -0.144 4.144 8 C -0.188 4.188 9 H 0.147 0.853 10 C 0.536 3.464 11 O -0.590 6.590 12 N -0.702 5.702 13 C 0.135 3.865 14 H 0.102 0.898 15 C -0.138 4.138 16 C 0.151 3.849 17 H 0.078 0.922 18 N -0.723 5.723 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.414 0.586 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.071 0.929 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 2.088 -26.044 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.198 4.198 4 C -0.196 4.196 5 C -0.126 4.126 6 H 0.108 0.892 7 C -0.181 4.181 8 C -0.209 4.209 9 H 0.164 0.836 10 C 0.325 3.675 11 O -0.471 6.471 12 N -0.352 5.352 13 C 0.029 3.971 14 H 0.120 0.880 15 C -0.178 4.178 16 C 0.040 3.960 17 H 0.096 0.904 18 N -0.361 5.361 19 C -0.379 4.379 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.801 3.199 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.212 4.212 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.250 0.750 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.670 1.667 -26.011 26.118 hybrid contribution -0.250 -0.216 1.422 1.460 sum -1.921 1.451 -24.589 24.707 Atomic orbital electron populations 1.22026 0.93217 1.02493 1.02540 1.20111 0.96301 0.94868 0.92414 1.21860 1.00610 0.95057 1.02245 1.21836 1.00684 1.00471 0.96577 1.22422 0.99327 1.01294 0.89549 0.89152 1.23290 1.00371 0.93070 1.01338 1.22295 1.02484 1.01855 0.94271 0.83582 1.20322 0.87237 0.76347 0.83617 1.90657 1.26306 1.46440 1.83683 1.45872 1.19361 1.60467 1.09454 1.22123 0.93643 0.96890 0.84429 0.87985 1.23648 1.02958 0.97292 0.93854 1.21688 0.94907 0.94752 0.84656 0.90412 1.42483 1.17403 1.69836 1.06334 1.19658 0.99726 1.29785 0.88751 0.90702 1.25548 0.96931 1.02804 1.01356 1.69794 1.10833 1.51927 1.29293 0.85240 0.77035 0.78322 0.79336 1.20328 1.22092 1.20627 1.24189 1.01129 0.98385 0.97518 0.92033 0.91592 0.91647 0.93742 0.91370 0.92554 0.92334 0.91332 0.93367 0.89891 0.84738 0.74966 0.89907 0.89273 0.79164 0.93950 0.91076 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 7.07 71.98 0.51 -0.91 16 2 C -0.04 -0.48 0.88 -52.18 -0.05 -0.53 16 3 C -0.14 -1.87 8.31 71.98 0.60 -1.27 16 4 C -0.14 -1.70 8.46 71.98 0.61 -1.09 16 5 C -0.11 -1.94 4.66 -10.79 -0.05 -1.99 16 6 H 0.09 2.14 7.64 -2.39 -0.02 2.12 16 7 C -0.14 -2.38 9.27 30.60 0.28 -2.10 16 8 C -0.19 -3.52 5.04 -11.54 -0.06 -3.58 16 9 H 0.15 1.98 7.07 -2.39 -0.02 1.96 16 10 C 0.54 14.50 7.61 87.66 0.67 15.17 16 11 O -0.59 -21.03 15.88 -3.06 -0.05 -21.08 16 12 N -0.70 -17.57 5.36 -440.04 -2.36 -19.93 16 13 C 0.13 4.01 4.21 45.52 0.19 4.20 16 14 H 0.10 3.23 7.50 -2.39 -0.02 3.21 16 15 C -0.14 -4.18 7.58 31.12 0.24 -3.94 16 16 C 0.15 5.86 4.48 45.57 0.20 6.06 16 17 H 0.08 3.03 8.10 -2.39 -0.02 3.01 16 18 N -0.72 -35.96 5.40 -320.17 -1.73 -37.69 16 19 C -0.25 -13.71 9.97 84.03 0.84 -12.87 16 20 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 22 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 23 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C -0.17 -6.04 7.69 31.18 0.24 -5.80 16 28 H 0.06 0.56 7.07 -2.39 -0.02 0.54 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.59 6.97 -2.39 -0.02 0.57 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.74 7.29 -2.39 -0.02 0.72 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.13 1.55 5.85 -2.38 -0.01 1.53 16 39 H 0.41 8.16 8.71 -92.71 -0.81 7.35 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.09 2.62 8.09 -2.39 -0.02 2.60 16 42 H 0.38 19.77 7.92 -92.71 -0.73 19.04 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 45 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -68.17 361.09 2.29 -65.88 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.57 Total: 35.51 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.69 Total: -12.42 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.81 Total: -115.96 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -68.17 2.29 -65.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022416500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.137 kcal (2) G-P(sol) polarization free energy of solvation -68.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds