Wall clock time and date at job start Tue Mar 31 2020 02:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47300 * 2 1 4 4 H 1.09004 * 110.81360 * 51.66047 * 3 2 1 5 5 C 1.54892 * 110.75608 * 288.33084 * 3 2 1 6 6 C 1.54267 * 104.19432 * 203.74317 * 5 3 2 7 7 C 1.53871 * 106.60057 * 23.60372 * 6 5 3 8 8 C 1.54269 * 106.59786 * 0.02562 * 7 6 5 9 9 H 1.08999 * 110.49078 * 95.20247 * 8 7 6 10 10 C 1.50702 * 110.48290 * 217.71068 * 8 7 6 11 11 O 1.21283 * 120.00262 * 118.54615 * 10 8 7 12 12 N 1.34777 * 119.99928 * 298.26520 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09001 * 112.84905 * 23.81116 * 13 12 10 15 15 C 1.53781 * 113.61433 * 155.00089 * 13 12 10 16 16 C 1.53785 * 87.07861 * 139.98479 * 15 13 12 17 17 H 1.09005 * 113.61226 * 89.11618 * 16 15 13 18 18 N 1.46498 * 113.61587 * 220.01737 * 16 15 13 19 19 C 1.36938 * 120.00549 * 205.00264 * 18 16 15 20 20 H 1.07996 * 119.99437 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00364 * 180.02562 * 19 18 16 22 22 N 1.31612 * 120.00320 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99933 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46974 * 90.00389 * 23 21 19 25 25 H 1.48496 * 109.47322 * 210.00240 * 23 21 19 26 26 H 1.48503 * 109.47244 * 330.00571 * 23 21 19 27 27 C 1.53780 * 87.08273 * 334.56699 * 16 15 13 28 28 H 1.09004 * 109.46625 * 60.00224 * 1 2 3 29 29 H 1.08998 * 109.46816 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47025 * 300.00550 * 1 2 3 31 31 H 1.08994 * 109.47536 * 239.99723 * 2 1 3 32 32 H 1.09000 * 109.47089 * 119.99918 * 2 1 3 33 33 H 1.08996 * 110.49077 * 85.05864 * 5 3 2 34 34 H 1.09005 * 110.48367 * 322.41738 * 5 3 2 35 35 H 1.08998 * 110.02838 * 264.32066 * 6 5 3 36 36 H 1.08998 * 110.07136 * 142.91169 * 6 5 3 37 37 H 1.08997 * 110.03851 * 240.71897 * 7 6 5 38 38 H 1.09009 * 110.07093 * 119.30473 * 7 6 5 39 39 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 40 40 H 1.08996 * 113.61616 * 254.52774 * 15 13 12 41 41 H 1.08990 * 113.61630 * 25.35356 * 15 13 12 42 42 H 0.97004 * 119.99840 * 24.99668 * 18 16 15 43 43 H 0.97000 * 120.00706 * 179.97438 * 22 21 19 44 44 H 1.08993 * 113.61656 * 270.88591 * 27 16 15 45 45 H 1.09004 * 113.61428 * 139.97892 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5733 2.0184 0.7992 5 6 1.7936 2.1119 -1.3749 6 6 2.8429 3.2409 -1.4395 7 6 3.9808 2.8386 -0.4850 8 6 3.5836 1.4788 0.1259 9 1 4.0341 0.6614 -0.4371 10 6 3.9959 1.4106 1.5738 11 8 3.1562 1.2697 2.4375 12 7 5.2984 1.5003 1.9084 13 6 5.6999 1.4279 3.3155 14 1 4.9715 0.9073 3.9372 15 6 7.1441 0.9407 3.5197 16 6 7.2602 1.9980 4.6304 17 1 6.9585 1.6342 5.6127 18 7 8.5518 2.6890 4.6503 19 6 9.0111 3.2489 5.8124 20 1 8.4209 3.1815 6.7143 21 6 10.2347 3.9041 5.8310 22 7 10.6764 4.4419 6.9481 23 14 11.2552 4.0214 4.2708 24 1 10.8870 5.2546 3.5300 25 1 12.6967 4.0682 4.6245 26 1 10.9931 2.8345 3.4175 27 6 6.1561 2.7768 3.8962 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.7859 2.5244 -1.4232 34 1 1.9530 1.3963 -2.1816 35 1 2.3990 4.1821 -1.1155 36 1 3.2250 3.3387 -2.4556 37 1 4.0892 3.5846 0.3022 38 1 4.9154 2.7406 -1.0375 39 1 5.9700 1.6130 1.2177 40 1 7.2117 -0.0843 3.8839 41 1 7.7937 1.1301 2.6653 42 1 9.0818 2.7498 3.8401 43 1 11.5316 4.8994 6.9613 44 1 6.5359 3.4694 3.1451 45 1 5.4261 3.2339 4.5642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022661531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:19 Heat of formation + Delta-G solvation = -32.295179 kcal Electronic energy + Delta-G solvation = -22097.266342 eV Core-core repulsion = 18921.343282 eV Total energy + Delta-G solvation = -3175.923061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40402 -38.73675 -37.29280 -34.24707 -33.45971 -32.61410 -30.58361 -29.38983 -27.85086 -25.24082 -24.72756 -23.27811 -22.19194 -21.16816 -20.19656 -20.02078 -19.38423 -17.57839 -17.10380 -16.32300 -15.70267 -15.14920 -14.82300 -14.63403 -14.47581 -14.21246 -13.66136 -13.54125 -13.21026 -13.07471 -12.72022 -12.44153 -12.18463 -12.06268 -11.97871 -11.77435 -11.59702 -11.34995 -11.06337 -10.90122 -10.84856 -10.78645 -10.69196 -10.60032 -10.44794 -10.28346 -10.15761 -9.66016 -9.53562 -8.95796 -8.78971 -7.30649 -5.80908 -3.17010 2.67955 3.26107 3.33121 3.35504 3.41793 4.16889 4.30701 4.45413 4.54596 4.85142 4.89392 4.98361 5.03625 5.09694 5.13718 5.14078 5.22763 5.25951 5.33935 5.36548 5.40216 5.47759 5.60987 5.62471 5.65530 5.72802 5.75139 5.82203 5.90416 5.95297 6.00558 6.03157 6.09835 6.14355 6.18530 6.26825 6.40128 6.52725 6.65357 6.94201 7.60712 7.95400 8.29975 8.38615 9.15831 9.88143 10.07615 11.37296 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.003203 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.149487 B = 8739.284458 C = 9249.786678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.071 4.071 4 H 0.088 0.912 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.113 4.113 9 H 0.099 0.901 10 C 0.518 3.482 11 O -0.541 6.541 12 N -0.716 5.716 13 C 0.118 3.882 14 H 0.111 0.889 15 C -0.162 4.162 16 C 0.175 3.825 17 H 0.088 0.912 18 N -0.735 5.735 19 C -0.249 4.249 20 H 0.092 0.908 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.176 4.176 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.917 -7.623 -19.748 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.089 4.089 4 H 0.107 0.893 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.134 4.134 9 H 0.117 0.883 10 C 0.304 3.696 11 O -0.418 6.418 12 N -0.366 5.366 13 C 0.013 3.987 14 H 0.128 0.872 15 C -0.202 4.202 16 C 0.063 3.937 17 H 0.106 0.894 18 N -0.374 5.374 19 C -0.379 4.379 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.218 4.218 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.444 -7.634 -18.842 26.788 hybrid contribution 1.297 0.294 -1.427 1.951 sum -16.147 -7.340 -20.269 26.934 Atomic orbital electron populations 1.21743 0.95821 1.01353 1.01763 1.21495 0.96026 0.95825 1.01861 1.22016 0.92440 0.96832 0.97661 0.89330 1.22459 0.98934 0.97390 0.97007 1.22104 0.95828 0.98863 0.99298 1.22122 0.98925 0.95432 0.98969 1.22282 0.98276 0.99729 0.93161 0.88331 1.20551 0.82519 0.75631 0.90871 1.90680 1.50760 1.49086 1.51277 1.46080 1.07579 1.73813 1.09083 1.22458 0.95711 0.99002 0.81508 0.87151 1.23881 0.94813 1.00589 1.00912 1.21335 0.85986 0.90667 0.95734 0.89414 1.42704 1.19008 1.65719 1.09994 1.19148 1.02220 1.27584 0.88904 0.89032 1.24697 0.97590 1.00225 0.96597 1.69697 1.21392 1.41566 1.25291 0.86544 0.80281 0.77753 0.83891 1.21080 1.21677 1.20355 1.24286 1.00391 0.96507 1.00591 0.92906 0.93022 0.92580 0.92372 0.91513 0.91456 0.91521 0.91634 0.91649 0.91137 0.91089 0.76832 0.91217 0.90265 0.80499 0.92990 0.90379 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.81 37.16 0.36 -0.83 16 2 C -0.11 -1.02 5.42 -26.73 -0.15 -1.17 16 3 C -0.07 -0.66 1.88 -88.62 -0.17 -0.83 16 4 H 0.09 1.03 7.53 -51.93 -0.39 0.64 16 5 C -0.12 -0.88 5.69 -25.07 -0.14 -1.02 16 6 C -0.12 -0.90 6.80 -25.61 -0.17 -1.08 16 7 C -0.12 -0.96 6.30 -25.61 -0.16 -1.12 16 8 C -0.11 -1.06 2.70 -90.10 -0.24 -1.30 16 9 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 10 C 0.52 6.62 7.01 -10.98 -0.08 6.54 16 11 O -0.54 -8.92 15.18 5.55 0.08 -8.84 16 12 N -0.72 -8.61 5.30 -53.02 -0.28 -8.89 16 13 C 0.12 1.68 4.24 -67.12 -0.28 1.40 16 14 H 0.11 1.68 7.46 -51.93 -0.39 1.29 16 15 C -0.16 -2.38 7.58 -25.92 -0.20 -2.57 16 16 C 0.17 3.25 4.48 -67.12 -0.30 2.95 16 17 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 18 N -0.73 -16.97 5.20 -52.64 -0.27 -17.25 16 19 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.00 0.14 5.50 -17.44 -0.10 0.04 16 22 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 23 Si 0.89 21.75 27.74 -169.99 -4.71 17.03 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 27 C -0.18 -2.93 7.68 -25.92 -0.20 -3.13 16 28 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 7.99 -51.93 -0.41 0.03 16 32 H 0.07 0.72 7.96 -51.93 -0.41 0.31 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.07 0.44 7.93 -51.93 -0.41 0.02 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.68 7.83 -51.93 -0.41 0.28 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 39 H 0.40 3.87 8.71 -40.82 -0.36 3.52 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 42 H 0.36 8.13 5.79 -40.82 -0.24 7.90 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -32.18 356.37 -9.09 -41.27 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.07 Total: 8.89 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.98 Total: -9.22 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.22 Total: -54.50 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.18 -9.09 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022661531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.973 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds