Wall clock time and date at job start Tue Mar 31 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47300 * 2 1 4 4 H 1.09004 * 110.81360 * 51.66047 * 3 2 1 5 5 C 1.54892 * 110.75608 * 288.33084 * 3 2 1 6 6 C 1.54267 * 104.19432 * 203.74317 * 5 3 2 7 7 C 1.53871 * 106.60057 * 23.60372 * 6 5 3 8 8 C 1.54269 * 106.59786 * 0.02562 * 7 6 5 9 9 H 1.08999 * 110.49078 * 95.20247 * 8 7 6 10 10 C 1.50702 * 110.48290 * 217.71068 * 8 7 6 11 11 O 1.21283 * 120.00262 * 118.54615 * 10 8 7 12 12 N 1.34777 * 119.99928 * 298.26520 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09001 * 112.84905 * 23.81116 * 13 12 10 15 15 C 1.53781 * 113.61433 * 155.00089 * 13 12 10 16 16 C 1.53785 * 87.07861 * 139.98479 * 15 13 12 17 17 H 1.09005 * 113.61226 * 89.11618 * 16 15 13 18 18 N 1.46498 * 113.61587 * 220.01737 * 16 15 13 19 19 C 1.36938 * 120.00549 * 205.00264 * 18 16 15 20 20 H 1.07996 * 119.99437 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00364 * 180.02562 * 19 18 16 22 22 N 1.31612 * 120.00320 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99933 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46974 * 90.00389 * 23 21 19 25 25 H 1.48496 * 109.47322 * 210.00240 * 23 21 19 26 26 H 1.48503 * 109.47244 * 330.00571 * 23 21 19 27 27 C 1.53780 * 87.08273 * 334.56699 * 16 15 13 28 28 H 1.09004 * 109.46625 * 60.00224 * 1 2 3 29 29 H 1.08998 * 109.46816 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47025 * 300.00550 * 1 2 3 31 31 H 1.08994 * 109.47536 * 239.99723 * 2 1 3 32 32 H 1.09000 * 109.47089 * 119.99918 * 2 1 3 33 33 H 1.08996 * 110.49077 * 85.05864 * 5 3 2 34 34 H 1.09005 * 110.48367 * 322.41738 * 5 3 2 35 35 H 1.08998 * 110.02838 * 264.32066 * 6 5 3 36 36 H 1.08998 * 110.07136 * 142.91169 * 6 5 3 37 37 H 1.08997 * 110.03851 * 240.71897 * 7 6 5 38 38 H 1.09009 * 110.07093 * 119.30473 * 7 6 5 39 39 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 40 40 H 1.08996 * 113.61616 * 254.52774 * 15 13 12 41 41 H 1.08990 * 113.61630 * 25.35356 * 15 13 12 42 42 H 0.97004 * 119.99840 * 24.99668 * 18 16 15 43 43 H 0.97000 * 120.00706 * 179.97438 * 22 21 19 44 44 H 1.08993 * 113.61656 * 270.88591 * 27 16 15 45 45 H 1.09004 * 113.61428 * 139.97892 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5733 2.0184 0.7992 5 6 1.7936 2.1119 -1.3749 6 6 2.8429 3.2409 -1.4395 7 6 3.9808 2.8386 -0.4850 8 6 3.5836 1.4788 0.1259 9 1 4.0341 0.6614 -0.4371 10 6 3.9959 1.4106 1.5738 11 8 3.1562 1.2697 2.4375 12 7 5.2984 1.5003 1.9084 13 6 5.6999 1.4279 3.3155 14 1 4.9715 0.9073 3.9372 15 6 7.1441 0.9407 3.5197 16 6 7.2602 1.9980 4.6304 17 1 6.9585 1.6342 5.6127 18 7 8.5518 2.6890 4.6503 19 6 9.0111 3.2489 5.8124 20 1 8.4209 3.1815 6.7143 21 6 10.2347 3.9041 5.8310 22 7 10.6764 4.4419 6.9481 23 14 11.2552 4.0214 4.2708 24 1 10.8870 5.2546 3.5300 25 1 12.6967 4.0682 4.6245 26 1 10.9931 2.8345 3.4175 27 6 6.1561 2.7768 3.8962 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.7859 2.5244 -1.4232 34 1 1.9530 1.3963 -2.1816 35 1 2.3990 4.1821 -1.1155 36 1 3.2250 3.3387 -2.4556 37 1 4.0892 3.5846 0.3022 38 1 4.9154 2.7406 -1.0375 39 1 5.9700 1.6130 1.2177 40 1 7.2117 -0.0843 3.8839 41 1 7.7937 1.1301 2.6653 42 1 9.0818 2.7498 3.8401 43 1 11.5316 4.8994 6.9613 44 1 6.5359 3.4694 3.1451 45 1 5.4261 3.2339 4.5642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022661531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:18 Heat of formation + Delta-G solvation = -53.021300 kcal Electronic energy + Delta-G solvation = -22098.165094 eV Core-core repulsion = 18921.343282 eV Total energy + Delta-G solvation = -3176.821813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40526 -39.90146 -38.28930 -35.86558 -34.49285 -33.83562 -32.46536 -30.19714 -28.48951 -26.58138 -26.37386 -24.38682 -23.32305 -22.22397 -21.25211 -20.88583 -20.55218 -19.45573 -18.10604 -17.61621 -16.50529 -16.43414 -16.23002 -15.76959 -15.43684 -15.32284 -14.98814 -14.71846 -14.35670 -14.10994 -13.82833 -13.72560 -13.61453 -13.33911 -12.95060 -12.87781 -12.74715 -12.37455 -12.20895 -12.03667 -11.96865 -11.88928 -11.80904 -11.68766 -11.58766 -11.46927 -11.30841 -11.23207 -10.92604 -10.63928 -9.97025 -9.29129 -8.02858 -5.37096 1.37601 1.42714 1.50025 1.67280 2.26098 2.48776 3.26690 3.45919 3.61115 3.64121 3.68713 3.81569 3.83476 4.05683 4.18517 4.24569 4.28379 4.36002 4.49352 4.50985 4.60808 4.67911 4.71174 4.77428 4.83080 4.84182 4.87633 4.98290 5.05727 5.09915 5.12571 5.14400 5.23255 5.25848 5.31508 5.34139 5.41649 5.48170 5.58959 5.66238 5.76611 6.21646 6.63661 7.06941 7.31944 7.82353 8.03066 9.18771 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.003203 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.149487 B = 8739.284458 C = 9249.786678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.074 4.074 4 H 0.057 0.943 5 C -0.113 4.113 6 C -0.123 4.123 7 C -0.115 4.115 8 C -0.107 4.107 9 H 0.124 0.876 10 C 0.514 3.486 11 O -0.584 6.584 12 N -0.706 5.706 13 C 0.134 3.866 14 H 0.100 0.900 15 C -0.138 4.138 16 C 0.152 3.848 17 H 0.073 0.927 18 N -0.737 5.737 19 C -0.237 4.237 20 H 0.053 0.947 21 C -0.068 4.068 22 N -0.986 5.986 23 Si 0.960 3.040 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.245 1.245 27 C -0.171 4.171 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.413 0.587 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.369 0.631 43 H 0.258 0.742 44 H 0.080 0.920 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.811 -8.754 -24.004 30.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.093 4.093 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.128 4.128 9 H 0.142 0.858 10 C 0.303 3.697 11 O -0.464 6.464 12 N -0.356 5.356 13 C 0.028 3.972 14 H 0.118 0.882 15 C -0.177 4.177 16 C 0.042 3.958 17 H 0.092 0.908 18 N -0.378 5.378 19 C -0.368 4.368 20 H 0.071 0.929 21 C -0.259 4.259 22 N -0.636 5.636 23 Si 0.787 3.213 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.169 1.169 27 C -0.213 4.213 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.250 0.750 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.378 -8.802 -23.159 30.262 hybrid contribution 1.128 0.640 0.004 1.297 sum -16.250 -8.162 -23.155 29.442 Atomic orbital electron populations 1.21736 0.95373 1.01797 1.01678 1.21475 0.96490 0.95473 1.01539 1.21987 0.92364 0.96852 0.98051 0.92482 1.22433 0.99212 0.97540 0.95892 1.22119 0.95426 0.98487 0.99987 1.22142 1.00410 0.93965 0.98736 1.22334 0.98321 1.01381 0.90726 0.85809 1.21230 0.82059 0.74325 0.92123 1.90671 1.51913 1.50937 1.52859 1.45935 1.07989 1.73334 1.08350 1.22068 0.95526 0.96807 0.82781 0.88200 1.23684 0.94773 0.99860 0.99425 1.21622 0.84640 0.92580 0.96913 0.90842 1.42623 1.20545 1.66128 1.08530 1.19098 1.01602 1.26763 0.89382 0.92854 1.25598 0.99279 1.00530 1.00498 1.69898 1.22026 1.43426 1.28269 0.85335 0.77413 0.79000 0.79562 1.20481 1.22431 1.16872 1.24165 0.99225 0.97623 1.00265 0.91491 0.92325 0.94162 0.90369 0.93985 0.91180 0.89781 0.92305 0.89790 0.93098 0.88847 0.74972 0.89727 0.88354 0.79695 0.93332 0.90104 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.81 71.98 0.71 -1.51 16 2 C -0.11 -1.84 5.42 30.60 0.17 -1.67 16 3 C -0.07 -1.27 1.88 -9.50 -0.02 -1.29 16 4 H 0.06 1.35 7.53 -2.38 -0.02 1.33 16 5 C -0.11 -1.34 5.69 31.67 0.18 -1.16 16 6 C -0.12 -1.44 6.80 31.32 0.21 -1.22 16 7 C -0.11 -1.57 6.30 31.32 0.20 -1.37 16 8 C -0.11 -1.74 2.70 -10.46 -0.03 -1.76 16 9 H 0.12 1.45 8.05 -2.39 -0.02 1.43 16 10 C 0.51 12.48 7.01 87.66 0.61 13.10 16 11 O -0.58 -19.44 15.18 -3.04 -0.05 -19.48 16 12 N -0.71 -15.35 5.30 -440.03 -2.33 -17.68 16 13 C 0.13 3.63 4.24 45.52 0.19 3.82 16 14 H 0.10 3.00 7.46 -2.39 -0.02 2.98 16 15 C -0.14 -3.67 7.58 31.12 0.24 -3.44 16 16 C 0.15 5.58 4.48 45.52 0.20 5.79 16 17 H 0.07 2.88 8.10 -2.38 -0.02 2.86 16 18 N -0.74 -33.38 5.20 -320.45 -1.67 -35.05 16 19 C -0.24 -13.52 10.45 84.03 0.88 -12.64 16 20 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 21 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 22 N -0.99 -63.51 13.97 21.65 0.30 -63.21 16 23 Si 0.96 44.47 27.74 68.60 1.90 46.38 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.24 -9.89 6.52 99.48 0.65 -9.24 16 27 C -0.17 -5.61 7.68 31.12 0.24 -5.37 16 28 H 0.07 0.80 7.65 -2.38 -0.02 0.78 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.96 7.99 -2.39 -0.02 0.94 16 32 H 0.04 0.89 7.96 -2.39 -0.02 0.87 16 33 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 34 H 0.08 0.74 7.93 -2.38 -0.02 0.73 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.90 7.83 -2.39 -0.02 0.88 16 38 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.41 6.52 8.71 -92.71 -0.81 5.71 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 42 H 0.37 15.57 5.79 -92.71 -0.54 15.04 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.68 356.37 1.97 -70.71 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.44 Total: 30.60 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 4.25 Total: -12.26 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -3.70 Total: -115.94 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.38 kcal Total: -72.68 1.97 -70.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022661531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.689 kcal (2) G-P(sol) polarization free energy of solvation -72.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds