Wall clock time and date at job start Tue Mar 31 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47647 * 2 1 4 4 H 1.09005 * 110.01591 * 306.68617 * 3 2 1 5 5 C 1.54268 * 110.07136 * 68.09994 * 3 2 1 6 6 C 1.54884 * 104.19531 * 142.92064 * 5 3 2 7 7 C 1.54892 * 102.75039 * 322.05822 * 6 5 3 8 8 C 1.53864 * 110.03539 * 185.29485 * 3 2 1 9 9 H 1.09005 * 110.03709 * 121.33547 * 8 3 2 10 10 C 1.50700 * 110.03565 * 359.95012 * 8 3 2 11 11 O 1.21278 * 120.00066 * 273.58361 * 10 8 3 12 12 N 1.34777 * 119.99874 * 93.85094 * 10 8 3 13 13 C 1.46500 * 119.99975 * 180.02562 * 12 10 8 14 14 H 1.08999 * 112.84709 * 23.80982 * 13 12 10 15 15 C 1.53785 * 113.61349 * 155.00273 * 13 12 10 16 16 C 1.53774 * 87.07965 * 139.98590 * 15 13 12 17 17 H 1.09003 * 113.62087 * 89.20132 * 16 15 13 18 18 N 1.46506 * 113.61297 * 220.02170 * 16 15 13 19 19 C 1.36940 * 120.00032 * 205.00295 * 18 16 15 20 20 H 1.08003 * 120.00154 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00255 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00067 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47161 * 60.00343 * 23 21 19 25 25 H 1.48499 * 109.46910 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47181 * 299.99839 * 23 21 19 27 27 C 1.53776 * 113.61736 * 252.49898 * 13 12 10 28 28 H 1.08995 * 109.47451 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46790 * 300.00169 * 1 2 3 30 30 H 1.09005 * 109.47236 * 59.99429 * 1 2 3 31 31 H 1.09011 * 109.46522 * 240.00118 * 2 1 3 32 32 H 1.08996 * 109.47261 * 120.00823 * 2 1 3 33 33 H 1.08998 * 110.48549 * 261.60176 * 5 3 2 34 34 H 1.09001 * 110.48213 * 24.24360 * 5 3 2 35 35 H 1.08999 * 110.75775 * 80.36930 * 6 5 3 36 36 H 1.09001 * 110.75546 * 203.56157 * 6 5 3 37 37 H 1.09005 * 110.48523 * 279.26917 * 7 6 5 38 38 H 1.09001 * 110.49027 * 156.62222 * 7 6 5 39 39 H 0.97003 * 120.00086 * 0.02562 * 12 10 8 40 40 H 1.08999 * 113.61401 * 254.52988 * 15 13 12 41 41 H 1.08995 * 113.61439 * 25.34891 * 15 13 12 42 42 H 0.96991 * 120.00326 * 24.99781 * 18 16 15 43 43 H 0.96997 * 120.00298 * 180.02562 * 22 21 19 44 44 H 1.08995 * 113.61721 * 334.57430 * 27 13 12 45 45 H 1.09008 * 113.60946 * 105.47396 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5876 1.9982 -0.8213 5 6 1.7071 2.1218 1.3444 6 6 2.9368 3.0186 1.6316 7 6 4.1180 2.1486 1.1347 8 6 3.5729 1.4595 -0.1334 9 1 3.8644 2.0228 -1.0199 10 6 4.0992 0.0502 -0.2217 11 8 4.3409 -0.5715 0.7912 12 7 4.3063 -0.5176 -1.4264 13 6 4.8174 -1.8878 -1.5122 14 1 4.6071 -2.4747 -0.6181 15 6 4.4439 -2.6037 -2.8210 16 6 5.8641 -3.1932 -2.8118 17 1 5.9412 -4.1384 -2.2743 18 7 6.4890 -3.2393 -4.1361 19 6 7.4743 -4.1539 -4.3969 20 1 7.7911 -4.8410 -3.6261 21 6 8.0660 -4.1980 -5.6518 22 7 7.6796 -3.3610 -6.5913 23 14 9.4105 -5.4451 -6.0072 24 1 8.8766 -6.8172 -5.8140 25 1 9.8745 -5.2868 -7.4089 26 1 10.5497 -5.2222 -5.0811 27 6 6.2811 -1.9715 -1.9763 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.8059 2.7279 1.2526 34 1 1.5876 1.3753 2.1297 35 1 2.8772 3.9485 1.0661 36 1 3.0255 3.2222 2.6988 37 1 4.3877 1.4065 1.8861 38 1 4.9762 2.7744 0.8898 39 1 4.1170 -0.0189 -2.2366 40 1 3.6600 -3.3516 -2.7013 41 1 4.2571 -1.9242 -3.6525 42 1 6.2048 -2.6222 -4.8283 43 1 8.0928 -3.3921 -7.4683 44 1 6.5981 -1.1191 -2.5771 45 1 6.9804 -2.2089 -1.1745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022661592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:30 Heat of formation + Delta-G solvation = -32.388169 kcal Electronic energy + Delta-G solvation = -22302.675052 eV Core-core repulsion = 19126.747959 eV Total energy + Delta-G solvation = -3175.927093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56335 -38.62229 -37.08819 -34.07506 -33.32176 -32.66750 -30.11083 -29.21089 -27.77754 -25.11164 -24.60702 -23.19366 -22.60018 -20.99622 -20.74205 -19.74840 -18.77423 -17.14753 -16.87812 -16.26039 -15.95738 -15.00743 -14.85717 -14.55971 -14.42594 -14.26082 -13.63173 -13.42543 -13.03068 -12.96801 -12.74849 -12.24584 -12.08577 -11.91039 -11.70542 -11.46183 -11.25552 -11.23173 -11.03081 -10.93030 -10.83564 -10.72955 -10.65250 -10.52651 -10.48907 -10.29636 -10.06327 -9.68531 -9.45305 -8.90366 -8.68494 -6.98952 -5.80646 -3.09489 2.74761 3.34802 3.42902 3.47373 3.48379 4.27250 4.36617 4.47208 4.58222 4.89815 4.99377 5.02218 5.10608 5.13894 5.24618 5.27407 5.33646 5.37256 5.39367 5.44479 5.47892 5.50704 5.62909 5.69495 5.83801 5.85906 5.87494 5.92769 5.96552 5.98565 6.09442 6.13460 6.19658 6.24918 6.26035 6.32117 6.55232 6.62250 6.78259 7.07945 7.67853 7.70353 8.37667 8.38717 9.49204 10.05995 10.40618 11.41756 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.003067 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.533403 B = 9126.596126 C = 9417.559776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.088 0.912 10 C 0.525 3.475 11 O -0.546 6.546 12 N -0.716 5.716 13 C 0.118 3.882 14 H 0.108 0.892 15 C -0.158 4.158 16 C 0.168 3.832 17 H 0.079 0.921 18 N -0.710 5.710 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.175 4.175 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 12.722 13.739 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.135 4.135 9 H 0.107 0.893 10 C 0.311 3.689 11 O -0.423 6.423 12 N -0.365 5.365 13 C 0.013 3.987 14 H 0.125 0.875 15 C -0.198 4.198 16 C 0.056 3.944 17 H 0.097 0.903 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.218 4.218 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.232 0.768 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.613 12.097 14.406 23.220 hybrid contribution 0.641 -0.136 -1.042 1.230 sum -12.972 11.961 13.364 22.135 Atomic orbital electron populations 1.21752 0.95685 1.01602 1.01548 1.21858 0.96141 0.95778 1.03153 1.21707 0.92307 0.96824 0.98591 0.90370 1.22443 0.97760 0.98522 0.96727 1.22480 0.94707 0.97967 1.00968 1.22360 0.97624 0.98794 0.96310 1.22065 0.96704 0.93816 1.00910 0.89339 1.20392 0.76519 0.88416 0.83543 1.90655 1.51971 1.64518 1.35169 1.46166 1.66381 1.16030 1.07960 1.22459 0.95746 0.81874 0.98637 0.87458 1.23852 1.00121 0.99741 0.96120 1.21356 0.89997 0.94950 0.88133 0.90283 1.42349 1.42783 1.41232 1.08462 1.19278 1.11365 1.10565 0.96380 0.91046 1.24761 1.00340 0.99519 0.96230 1.69646 1.45306 1.39319 1.03907 0.86250 0.81838 0.80987 0.77022 1.21185 1.21678 1.21200 1.24315 0.94796 1.02251 1.00422 0.92813 0.92758 0.92893 0.91459 0.90931 0.91643 0.91203 0.91569 0.91397 0.89576 0.91498 0.76758 0.91624 0.90040 0.78108 0.93399 0.90281 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.77 37.16 0.36 -0.88 16 2 C -0.13 -1.33 4.12 -26.73 -0.11 -1.44 16 3 C -0.08 -0.66 2.92 -89.51 -0.26 -0.93 16 4 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.12 -0.94 5.55 -25.07 -0.14 -1.08 16 6 C -0.12 -0.97 6.91 -24.74 -0.17 -1.14 16 7 C -0.11 -1.12 6.31 -25.07 -0.16 -1.28 16 8 C -0.11 -1.14 3.29 -90.66 -0.30 -1.44 16 9 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 10 C 0.52 6.98 4.68 -10.99 -0.05 6.93 16 11 O -0.55 -9.21 14.64 5.56 0.08 -9.13 16 12 N -0.72 -9.16 4.81 -53.02 -0.25 -9.42 16 13 C 0.12 1.77 4.24 -67.12 -0.28 1.49 16 14 H 0.11 1.71 7.47 -51.93 -0.39 1.32 16 15 C -0.16 -2.49 7.58 -25.92 -0.20 -2.69 16 16 C 0.17 3.30 4.48 -67.12 -0.30 2.99 16 17 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 18 N -0.71 -17.58 5.40 -52.64 -0.28 -17.86 16 19 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.42 7.52 -51.93 -0.39 0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.74 6.81 -51.92 -0.35 0.39 16 32 H 0.07 0.89 7.12 -51.93 -0.37 0.52 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.62 7.76 -51.93 -0.40 0.22 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 1.04 6.88 -51.93 -0.36 0.69 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.40 4.28 8.73 -40.82 -0.36 3.93 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.38 10.02 7.92 -40.82 -0.32 9.69 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -31.08 353.89 -9.46 -40.54 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.98 Total: 10.62 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.05 Total: -10.15 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.19 Total: -54.50 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.08 -9.46 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022661592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.153 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds