Wall clock time and date at job start Tue Mar 31 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47647 * 2 1 4 4 H 1.09005 * 110.01591 * 306.68617 * 3 2 1 5 5 C 1.54268 * 110.07136 * 68.09994 * 3 2 1 6 6 C 1.54884 * 104.19531 * 142.92064 * 5 3 2 7 7 C 1.54892 * 102.75039 * 322.05822 * 6 5 3 8 8 C 1.53864 * 110.03539 * 185.29485 * 3 2 1 9 9 H 1.09005 * 110.03709 * 121.33547 * 8 3 2 10 10 C 1.50700 * 110.03565 * 359.95012 * 8 3 2 11 11 O 1.21278 * 120.00066 * 273.58361 * 10 8 3 12 12 N 1.34777 * 119.99874 * 93.85094 * 10 8 3 13 13 C 1.46500 * 119.99975 * 180.02562 * 12 10 8 14 14 H 1.08999 * 112.84709 * 23.80982 * 13 12 10 15 15 C 1.53785 * 113.61349 * 155.00273 * 13 12 10 16 16 C 1.53774 * 87.07965 * 139.98590 * 15 13 12 17 17 H 1.09003 * 113.62087 * 89.20132 * 16 15 13 18 18 N 1.46506 * 113.61297 * 220.02170 * 16 15 13 19 19 C 1.36940 * 120.00032 * 205.00295 * 18 16 15 20 20 H 1.08003 * 120.00154 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00255 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00067 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47161 * 60.00343 * 23 21 19 25 25 H 1.48499 * 109.46910 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47181 * 299.99839 * 23 21 19 27 27 C 1.53776 * 113.61736 * 252.49898 * 13 12 10 28 28 H 1.08995 * 109.47451 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46790 * 300.00169 * 1 2 3 30 30 H 1.09005 * 109.47236 * 59.99429 * 1 2 3 31 31 H 1.09011 * 109.46522 * 240.00118 * 2 1 3 32 32 H 1.08996 * 109.47261 * 120.00823 * 2 1 3 33 33 H 1.08998 * 110.48549 * 261.60176 * 5 3 2 34 34 H 1.09001 * 110.48213 * 24.24360 * 5 3 2 35 35 H 1.08999 * 110.75775 * 80.36930 * 6 5 3 36 36 H 1.09001 * 110.75546 * 203.56157 * 6 5 3 37 37 H 1.09005 * 110.48523 * 279.26917 * 7 6 5 38 38 H 1.09001 * 110.49027 * 156.62222 * 7 6 5 39 39 H 0.97003 * 120.00086 * 0.02562 * 12 10 8 40 40 H 1.08999 * 113.61401 * 254.52988 * 15 13 12 41 41 H 1.08995 * 113.61439 * 25.34891 * 15 13 12 42 42 H 0.96991 * 120.00326 * 24.99781 * 18 16 15 43 43 H 0.96997 * 120.00298 * 180.02562 * 22 21 19 44 44 H 1.08995 * 113.61721 * 334.57430 * 27 13 12 45 45 H 1.09008 * 113.60946 * 105.47396 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5876 1.9982 -0.8213 5 6 1.7071 2.1218 1.3444 6 6 2.9368 3.0186 1.6316 7 6 4.1180 2.1486 1.1347 8 6 3.5729 1.4595 -0.1334 9 1 3.8644 2.0228 -1.0199 10 6 4.0992 0.0502 -0.2217 11 8 4.3409 -0.5715 0.7912 12 7 4.3063 -0.5176 -1.4264 13 6 4.8174 -1.8878 -1.5122 14 1 4.6071 -2.4747 -0.6181 15 6 4.4439 -2.6037 -2.8210 16 6 5.8641 -3.1932 -2.8118 17 1 5.9412 -4.1384 -2.2743 18 7 6.4890 -3.2393 -4.1361 19 6 7.4743 -4.1539 -4.3969 20 1 7.7911 -4.8410 -3.6261 21 6 8.0660 -4.1980 -5.6518 22 7 7.6796 -3.3610 -6.5913 23 14 9.4105 -5.4451 -6.0072 24 1 8.8766 -6.8172 -5.8140 25 1 9.8745 -5.2868 -7.4089 26 1 10.5497 -5.2222 -5.0811 27 6 6.2811 -1.9715 -1.9763 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.8059 2.7279 1.2526 34 1 1.5876 1.3753 2.1297 35 1 2.8772 3.9485 1.0661 36 1 3.0255 3.2222 2.6988 37 1 4.3877 1.4065 1.8861 38 1 4.9762 2.7744 0.8898 39 1 4.1170 -0.0189 -2.2366 40 1 3.6600 -3.3516 -2.7013 41 1 4.2571 -1.9242 -3.6525 42 1 6.2048 -2.6222 -4.8283 43 1 8.0928 -3.3921 -7.4683 44 1 6.5981 -1.1191 -2.5771 45 1 6.9804 -2.2089 -1.1745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022661592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:29 Heat of formation + Delta-G solvation = -51.403587 kcal Electronic energy + Delta-G solvation = -22303.499622 eV Core-core repulsion = 19126.747959 eV Total energy + Delta-G solvation = -3176.751663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58766 -39.88791 -38.14036 -35.76848 -34.29769 -33.96462 -31.89994 -30.16200 -28.46692 -26.56815 -26.37903 -24.39993 -23.60898 -22.18140 -21.46542 -21.03857 -19.95167 -19.10129 -17.88840 -17.46628 -16.89850 -16.40208 -16.08749 -15.76259 -15.69144 -15.27394 -14.96729 -14.73143 -14.36082 -14.14232 -13.74427 -13.35156 -13.31082 -13.16043 -12.99556 -12.79537 -12.49047 -12.27150 -12.20342 -12.18523 -12.07357 -11.87248 -11.79629 -11.73328 -11.53970 -11.45861 -11.40595 -11.32088 -10.87611 -10.60490 -9.92256 -8.99542 -7.96041 -5.24235 1.47416 1.49827 1.55884 1.68815 2.27540 2.56878 3.35410 3.51653 3.63760 3.68258 3.74302 3.86000 3.96065 4.08389 4.23351 4.26417 4.30796 4.38559 4.43656 4.55208 4.63018 4.69653 4.74247 4.79679 4.80836 4.87364 4.89157 4.91352 5.05834 5.13479 5.14039 5.15991 5.20554 5.24338 5.28101 5.38694 5.40762 5.45269 5.50744 5.56266 5.70165 6.26357 6.65256 7.32920 7.33123 8.08276 8.32202 9.26885 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.003067 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.533403 B = 9126.596126 C = 9417.559776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C -0.072 4.072 4 H 0.101 0.899 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.111 4.111 9 H 0.112 0.888 10 C 0.523 3.477 11 O -0.585 6.585 12 N -0.708 5.708 13 C 0.137 3.863 14 H 0.101 0.899 15 C -0.138 4.138 16 C 0.149 3.851 17 H 0.077 0.923 18 N -0.723 5.723 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.169 4.169 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.411 0.589 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.071 0.929 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.157 14.008 14.004 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.091 4.091 4 H 0.120 0.880 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.132 4.132 9 H 0.130 0.870 10 C 0.312 3.688 11 O -0.465 6.465 12 N -0.359 5.359 13 C 0.031 3.969 14 H 0.119 0.881 15 C -0.178 4.178 16 C 0.039 3.961 17 H 0.095 0.905 18 N -0.361 5.361 19 C -0.380 4.380 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.211 4.211 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.248 0.752 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.860 13.395 14.710 24.832 hybrid contribution 1.004 -0.539 -1.022 1.530 sum -13.857 12.857 13.689 23.338 Atomic orbital electron populations 1.21724 0.94253 1.01660 1.02566 1.21795 0.97405 0.96369 1.01158 1.21763 0.91193 0.96196 0.99926 0.88044 1.22444 0.98756 0.98388 0.95752 1.22474 0.93313 0.98145 1.01524 1.22367 0.98980 0.98564 0.95570 1.22171 0.97609 0.91461 1.01998 0.86984 1.21021 0.75513 0.89508 0.82754 1.90643 1.53586 1.65765 1.36511 1.46051 1.65936 1.15157 1.08720 1.22058 0.93640 0.83184 0.97991 0.88083 1.23643 0.97842 0.99796 0.96490 1.21668 0.92467 0.95732 0.86249 0.90529 1.42483 1.42848 1.40705 1.10056 1.19664 1.11447 1.10501 0.96376 0.90729 1.25535 1.02955 1.01734 0.96329 1.69791 1.46804 1.41197 1.04055 0.85246 0.79282 0.79018 0.76434 1.20338 1.22073 1.20634 1.24147 0.96500 1.00851 0.99636 0.93331 0.91957 0.91574 0.92509 0.93849 0.89612 0.92718 0.89677 0.91002 0.92498 0.90732 0.75209 0.90163 0.89376 0.79171 0.93944 0.91070 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.77 71.98 0.70 -1.46 16 2 C -0.13 -2.46 4.12 30.59 0.13 -2.33 16 3 C -0.07 -1.09 2.92 -10.07 -0.03 -1.12 16 4 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 5 C -0.12 -1.60 5.55 31.67 0.18 -1.42 16 6 C -0.12 -1.56 6.91 31.88 0.22 -1.33 16 7 C -0.12 -2.16 6.31 31.67 0.20 -1.96 16 8 C -0.11 -2.02 3.29 -10.82 -0.04 -2.05 16 9 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 10 C 0.52 13.53 4.68 87.66 0.41 13.94 16 11 O -0.58 -20.01 14.64 -3.02 -0.04 -20.05 16 12 N -0.71 -17.24 4.81 -440.04 -2.12 -19.36 16 13 C 0.14 4.02 4.24 45.52 0.19 4.22 16 14 H 0.10 3.18 7.47 -2.39 -0.02 3.17 16 15 C -0.14 -4.18 7.58 31.12 0.24 -3.94 16 16 C 0.15 5.82 4.48 45.51 0.20 6.02 16 17 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 18 N -0.72 -36.01 5.40 -320.44 -1.73 -37.74 16 19 C -0.25 -13.77 9.97 84.03 0.84 -12.93 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 22 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 23 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 C -0.17 -5.97 7.68 31.12 0.24 -5.73 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.83 7.52 -2.38 -0.02 0.81 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 1.18 6.81 -2.38 -0.02 1.16 16 32 H 0.04 1.07 7.12 -2.39 -0.02 1.06 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.92 7.76 -2.39 -0.02 0.90 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.40 6.88 -2.38 -0.02 1.38 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.41 7.98 8.73 -92.71 -0.81 7.17 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 2.59 8.10 -2.39 -0.02 2.57 16 42 H 0.38 19.78 7.92 -92.71 -0.73 19.05 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -67.65 353.89 1.79 -65.86 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -0.57 Total: 35.39 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 3.95 Total: -13.83 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -3.56 Total: -115.45 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.04 Total: -20.05 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -67.65 1.79 -65.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022661592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.452 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds