Wall clock time and date at job start Tue Mar 31 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47074 * 2 1 4 4 H 1.08998 * 115.55020 * 29.32919 * 3 2 1 5 5 C 1.52993 * 117.51553 * 243.62794 * 3 2 1 6 6 C 1.53002 * 117.49686 * 174.99804 * 3 2 1 7 7 H 1.08998 * 117.50002 * 0.02562 * 6 3 2 8 8 C 1.50693 * 117.49637 * 215.00471 * 6 3 2 9 9 O 1.21282 * 120.00151 * 359.97438 * 8 6 3 10 10 N 1.34783 * 120.00112 * 180.02562 * 8 6 3 11 11 C 1.46490 * 120.00408 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47311 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.70432 * 300.35255 * 12 11 10 14 14 C 1.53199 * 109.58797 * 180.02562 * 12 11 10 15 15 C 1.53035 * 109.31349 * 185.57814 * 14 12 11 16 16 C 1.53040 * 109.53744 * 61.36489 * 15 14 12 17 17 C 1.53196 * 109.31259 * 298.63150 * 16 15 14 18 18 N 1.46923 * 108.77033 * 54.63933 * 17 16 15 19 19 C 1.36944 * 120.62955 * 126.41457 * 18 17 16 20 20 H 1.08004 * 119.99904 * 210.40516 * 19 18 17 21 21 C 1.38815 * 120.00060 * 30.40398 * 19 18 17 22 22 N 1.31612 * 119.99744 * 15.47973 * 21 19 18 23 23 Si 1.86793 * 119.99814 * 195.47801 * 21 19 18 24 24 H 1.48506 * 109.47292 * 59.99951 * 23 21 19 25 25 H 1.48500 * 109.47244 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47516 * 300.00172 * 23 21 19 27 27 H 1.09006 * 109.47054 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47535 * 300.00204 * 1 2 3 29 29 H 1.09009 * 109.46967 * 60.00039 * 1 2 3 30 30 H 1.09005 * 109.47124 * 240.00029 * 2 1 3 31 31 H 1.09000 * 109.47148 * 119.99956 * 2 1 3 32 32 H 1.09005 * 117.49976 * 145.03420 * 5 3 2 33 33 H 1.08997 * 117.50537 * 0.02562 * 5 3 2 34 34 H 0.97001 * 119.99277 * 359.97438 * 10 8 6 35 35 H 1.09003 * 109.47598 * 59.99328 * 11 10 8 36 36 H 1.09003 * 109.46996 * 299.99585 * 11 10 8 37 37 H 1.09006 * 109.49427 * 305.53145 * 14 12 11 38 38 H 1.08997 * 109.49464 * 65.62433 * 14 12 11 39 39 H 1.09002 * 109.46274 * 181.38553 * 15 14 12 40 40 H 1.09002 * 109.46104 * 301.34311 * 15 14 12 41 41 H 1.08998 * 109.49864 * 178.68550 * 16 15 14 42 42 H 1.08998 * 109.50111 * 58.59049 * 16 15 14 43 43 H 1.08999 * 109.58550 * 294.84936 * 17 16 15 44 44 H 1.09000 * 109.58549 * 174.42399 * 17 16 15 45 45 H 0.97004 * 119.99585 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8438 1.9080 -1.2157 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7719 0.1957 8 6 4.0227 2.8617 0.8919 9 8 3.2157 3.6164 1.3919 10 7 5.3423 3.1002 1.0274 11 6 5.8019 4.2700 1.7799 12 6 7.3314 4.3066 1.7819 13 1 7.7201 3.3986 2.2429 14 6 7.8149 5.5289 2.5688 15 6 9.3368 5.6376 2.4504 16 6 9.7237 5.8247 0.9816 17 6 9.2620 4.6058 0.1767 18 7 7.8235 4.4082 0.4013 19 6 6.9579 4.3199 -0.6563 20 1 5.9381 4.6589 -0.5491 21 6 7.3913 3.7946 -1.8659 22 7 8.5136 3.1093 -1.9214 23 14 6.3816 4.0605 -3.4148 24 1 6.2561 5.5162 -3.6802 25 1 7.0553 3.4036 -4.5637 26 1 5.0303 3.4724 -3.2319 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7211 2.9434 -1.5338 33 1 3.0092 1.1868 -2.0160 34 1 5.9878 2.4967 0.6271 35 1 5.4389 4.2078 2.8058 36 1 5.4170 5.1766 1.3127 37 1 7.3531 6.4289 2.1627 38 1 7.5385 5.4190 3.6174 39 1 9.6860 6.4923 3.0297 40 1 9.7968 4.7269 2.8339 41 1 10.8060 5.9254 0.9005 42 1 9.2442 6.7220 0.5905 43 1 9.8081 3.7220 0.5064 44 1 9.4461 4.7772 -0.8839 45 1 8.8162 2.7420 -2.7666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024666724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:42 Heat of formation + Delta-G solvation = -11.208735 kcal Electronic energy + Delta-G solvation = -23094.362226 eV Core-core repulsion = 19919.353542 eV Total energy + Delta-G solvation = -3175.008684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.52822 -37.96334 -36.61305 -34.07059 -33.05667 -31.99693 -30.68911 -29.90960 -26.32702 -25.09738 -23.86177 -22.97235 -22.13377 -20.69155 -20.27627 -19.49780 -19.00857 -17.01139 -16.13534 -15.60879 -15.38699 -14.60308 -14.52788 -14.14756 -14.01865 -13.70777 -13.54348 -13.37127 -12.84763 -12.54182 -12.37008 -12.22595 -12.05043 -11.95803 -11.70753 -11.28114 -11.17419 -10.96290 -10.92694 -10.77247 -10.53833 -10.30279 -10.15198 -10.02463 -10.00055 -9.81752 -9.54018 -9.43588 -9.13559 -8.56251 -8.17420 -6.66999 -5.84238 -3.29133 3.09088 3.34335 3.40132 3.43404 3.76862 4.19851 4.44025 4.84508 5.00512 5.08254 5.22674 5.28715 5.32907 5.36239 5.51557 5.53015 5.56093 5.64241 5.69468 5.79553 5.92998 5.95954 6.00000 6.07339 6.08148 6.14537 6.16076 6.26144 6.34104 6.36254 6.42101 6.50503 6.59485 6.70687 6.72832 6.85309 6.98697 7.23915 7.36916 7.62871 7.79599 8.33682 8.40462 8.94256 9.16274 9.78180 10.36048 11.22935 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.005686 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.782241 B = 4923.519604 C = 6143.786487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.125 4.125 4 H 0.115 0.885 5 C -0.145 4.145 6 C -0.181 4.181 7 H 0.119 0.881 8 C 0.537 3.463 9 O -0.568 6.568 10 N -0.689 5.689 11 C 0.135 3.865 12 C 0.161 3.839 13 H 0.031 0.969 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.174 3.826 18 N -0.588 5.588 19 C -0.251 4.251 20 H 0.070 0.930 21 C 0.009 3.991 22 N -0.900 5.900 23 Si 0.892 3.108 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.415 0.585 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.018 0.982 44 H 0.083 0.917 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 -3.488 4.885 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.143 4.143 4 H 0.133 0.867 5 C -0.183 4.183 6 C -0.202 4.202 7 H 0.137 0.863 8 C 0.323 3.677 9 O -0.449 6.449 10 N -0.339 5.339 11 C 0.011 3.989 12 C 0.054 3.946 13 H 0.049 0.951 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.312 5.312 19 C -0.380 4.380 20 H 0.087 0.913 21 C -0.190 4.190 22 N -0.544 5.544 23 Si 0.722 3.278 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.102 0.898 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.387 -3.047 5.089 8.716 hybrid contribution 0.121 -0.072 -1.152 1.161 sum -6.265 -3.119 3.937 8.030 Atomic orbital electron populations 1.21733 0.95498 1.01270 1.02041 1.21138 0.95929 0.94085 1.01981 1.22431 0.91974 0.98143 1.01792 0.86720 1.23026 1.01841 1.03028 0.90392 1.22240 0.96644 0.99372 1.01928 0.86306 1.19522 0.82700 0.85504 0.79979 1.90611 1.54437 1.49466 1.50404 1.45920 1.06493 1.27983 1.53489 1.21271 0.94419 0.88961 0.94280 1.20725 0.90924 0.95063 0.87936 0.95121 1.21944 0.96253 0.99841 0.98683 1.21361 0.95765 1.00095 0.97273 1.22196 0.98832 1.01644 0.95683 1.20748 0.83322 0.91706 0.99406 1.44084 1.03706 1.84186 0.99247 1.19151 0.94592 1.34442 0.89843 0.91288 1.25029 0.97617 0.97488 0.98885 1.70011 1.23152 1.36087 1.25140 0.86529 0.80015 0.78028 0.83278 1.21196 1.21750 1.20378 0.92893 0.92607 0.92614 0.91774 0.91606 0.88485 0.88218 0.74717 0.92804 0.91714 0.92104 0.93054 0.93723 0.92887 0.93536 0.92838 0.96388 0.89836 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.87 37.16 0.37 -1.07 16 2 C -0.09 -1.05 6.22 -26.73 -0.17 -1.21 16 3 C -0.12 -1.76 5.25 -90.62 -0.48 -2.24 16 4 H 0.11 1.77 7.60 -51.93 -0.39 1.38 16 5 C -0.15 -2.24 9.88 -26.73 -0.26 -2.50 16 6 C -0.18 -2.93 5.91 -91.77 -0.54 -3.47 16 7 H 0.12 1.73 8.14 -51.93 -0.42 1.30 16 8 C 0.54 10.46 7.61 -10.99 -0.08 10.38 16 9 O -0.57 -12.55 16.26 5.56 0.09 -12.46 16 10 N -0.69 -13.50 3.85 -60.30 -0.23 -13.73 16 11 C 0.13 2.61 4.42 -4.05 -0.02 2.59 16 12 C 0.16 3.13 3.00 -67.60 -0.20 2.92 16 13 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 14 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 15 C -0.11 -1.77 5.88 -26.69 -0.16 -1.92 16 16 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 17 C 0.17 3.92 5.28 -3.71 -0.02 3.90 16 18 N -0.59 -13.48 2.97 -164.77 -0.49 -13.97 16 19 C -0.25 -6.26 7.03 -15.06 -0.11 -6.37 16 20 H 0.07 1.78 5.83 -52.48 -0.31 1.48 16 21 C 0.01 0.23 4.93 -17.43 -0.09 0.15 16 22 N -0.90 -24.34 11.28 55.49 0.63 -23.71 16 23 Si 0.89 20.96 29.58 -169.99 -5.03 15.93 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.10 1.37 8.03 -51.93 -0.42 0.96 16 34 H 0.42 8.45 7.44 -40.82 -0.30 8.15 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.37 7.39 -51.93 -0.38 0.99 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 2.13 6.19 -51.93 -0.32 1.81 16 45 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -27.94 352.81 -9.79 -37.73 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.01 Total: 8.90 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.06 Total: -4.01 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.10 Total: -51.41 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.94 -9.79 -37.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024666724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.519 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds