Wall clock time and date at job start Tue Mar 31 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47074 * 2 1 4 4 H 1.08998 * 115.55020 * 29.32919 * 3 2 1 5 5 C 1.52993 * 117.51553 * 243.62794 * 3 2 1 6 6 C 1.53002 * 117.49686 * 174.99804 * 3 2 1 7 7 H 1.08998 * 117.50002 * 0.02562 * 6 3 2 8 8 C 1.50693 * 117.49637 * 215.00471 * 6 3 2 9 9 O 1.21282 * 120.00151 * 359.97438 * 8 6 3 10 10 N 1.34783 * 120.00112 * 180.02562 * 8 6 3 11 11 C 1.46490 * 120.00408 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47311 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.70432 * 300.35255 * 12 11 10 14 14 C 1.53199 * 109.58797 * 180.02562 * 12 11 10 15 15 C 1.53035 * 109.31349 * 185.57814 * 14 12 11 16 16 C 1.53040 * 109.53744 * 61.36489 * 15 14 12 17 17 C 1.53196 * 109.31259 * 298.63150 * 16 15 14 18 18 N 1.46923 * 108.77033 * 54.63933 * 17 16 15 19 19 C 1.36944 * 120.62955 * 126.41457 * 18 17 16 20 20 H 1.08004 * 119.99904 * 210.40516 * 19 18 17 21 21 C 1.38815 * 120.00060 * 30.40398 * 19 18 17 22 22 N 1.31612 * 119.99744 * 15.47973 * 21 19 18 23 23 Si 1.86793 * 119.99814 * 195.47801 * 21 19 18 24 24 H 1.48506 * 109.47292 * 59.99951 * 23 21 19 25 25 H 1.48500 * 109.47244 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47516 * 300.00172 * 23 21 19 27 27 H 1.09006 * 109.47054 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47535 * 300.00204 * 1 2 3 29 29 H 1.09009 * 109.46967 * 60.00039 * 1 2 3 30 30 H 1.09005 * 109.47124 * 240.00029 * 2 1 3 31 31 H 1.09000 * 109.47148 * 119.99956 * 2 1 3 32 32 H 1.09005 * 117.49976 * 145.03420 * 5 3 2 33 33 H 1.08997 * 117.50537 * 0.02562 * 5 3 2 34 34 H 0.97001 * 119.99277 * 359.97438 * 10 8 6 35 35 H 1.09003 * 109.47598 * 59.99328 * 11 10 8 36 36 H 1.09003 * 109.46996 * 299.99585 * 11 10 8 37 37 H 1.09006 * 109.49427 * 305.53145 * 14 12 11 38 38 H 1.08997 * 109.49464 * 65.62433 * 14 12 11 39 39 H 1.09002 * 109.46274 * 181.38553 * 15 14 12 40 40 H 1.09002 * 109.46104 * 301.34311 * 15 14 12 41 41 H 1.08998 * 109.49864 * 178.68550 * 16 15 14 42 42 H 1.08998 * 109.50111 * 58.59049 * 16 15 14 43 43 H 1.08999 * 109.58550 * 294.84936 * 17 16 15 44 44 H 1.09000 * 109.58549 * 174.42399 * 17 16 15 45 45 H 0.97004 * 119.99585 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8438 1.9080 -1.2157 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7719 0.1957 8 6 4.0227 2.8617 0.8919 9 8 3.2157 3.6164 1.3919 10 7 5.3423 3.1002 1.0274 11 6 5.8019 4.2700 1.7799 12 6 7.3314 4.3066 1.7819 13 1 7.7201 3.3986 2.2429 14 6 7.8149 5.5289 2.5688 15 6 9.3368 5.6376 2.4504 16 6 9.7237 5.8247 0.9816 17 6 9.2620 4.6058 0.1767 18 7 7.8235 4.4082 0.4013 19 6 6.9579 4.3199 -0.6563 20 1 5.9381 4.6589 -0.5491 21 6 7.3913 3.7946 -1.8659 22 7 8.5136 3.1093 -1.9214 23 14 6.3816 4.0605 -3.4148 24 1 6.2561 5.5162 -3.6802 25 1 7.0553 3.4036 -4.5637 26 1 5.0303 3.4724 -3.2319 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7211 2.9434 -1.5338 33 1 3.0092 1.1868 -2.0160 34 1 5.9878 2.4967 0.6271 35 1 5.4389 4.2078 2.8058 36 1 5.4170 5.1766 1.3127 37 1 7.3531 6.4289 2.1627 38 1 7.5385 5.4190 3.6174 39 1 9.6860 6.4923 3.0297 40 1 9.7968 4.7269 2.8339 41 1 10.8060 5.9254 0.9005 42 1 9.2442 6.7220 0.5905 43 1 9.8081 3.7220 0.5064 44 1 9.4461 4.7772 -0.8839 45 1 8.8162 2.7420 -2.7666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024666724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:42 Heat of formation + Delta-G solvation = -25.664791 kcal Electronic energy + Delta-G solvation = -23094.989088 eV Core-core repulsion = 19919.353542 eV Total energy + Delta-G solvation = -3175.635545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03121 -39.52186 -37.94217 -35.65864 -34.88794 -32.98553 -32.25885 -31.66999 -27.92854 -26.82710 -24.89963 -24.36645 -23.78275 -22.23114 -21.44993 -20.98645 -20.58418 -18.64049 -17.78328 -17.34281 -16.91181 -16.14633 -15.76110 -15.70347 -15.48670 -15.09582 -14.95724 -14.81588 -14.54729 -14.07226 -13.65451 -13.56076 -13.45412 -13.27422 -12.99935 -12.83445 -12.75614 -12.58103 -12.32471 -12.17939 -12.03294 -11.92144 -11.81229 -11.54338 -11.25199 -11.13072 -11.08569 -11.00380 -10.66148 -10.49598 -9.83062 -8.56364 -7.82218 -5.27789 1.43383 1.47165 1.51572 1.59878 2.33349 2.51653 2.91695 3.33098 3.56964 3.71615 3.81904 3.89941 3.99449 4.19806 4.22130 4.27012 4.27360 4.42032 4.49027 4.53757 4.58744 4.64090 4.74708 4.76693 4.85586 4.92188 4.98024 4.98998 5.13372 5.15302 5.20866 5.22422 5.27493 5.30407 5.37565 5.45304 5.50435 5.62517 5.64894 5.76149 5.82918 6.44609 6.74283 7.20456 7.36571 7.89476 8.42725 9.22349 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.005686 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.782241 B = 4923.519604 C = 6143.786487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.105 4.105 4 H 0.099 0.901 5 C -0.150 4.150 6 C -0.195 4.195 7 H 0.138 0.862 8 C 0.532 3.468 9 O -0.599 6.599 10 N -0.691 5.691 11 C 0.139 3.861 12 C 0.160 3.840 13 H 0.033 0.967 14 C -0.122 4.122 15 C -0.102 4.102 16 C -0.136 4.136 17 C 0.178 3.822 18 N -0.601 5.601 19 C -0.237 4.237 20 H 0.059 0.941 21 C -0.031 4.031 22 N -0.924 5.924 23 Si 0.935 3.065 24 H -0.294 1.294 25 H -0.295 1.295 26 H -0.269 1.269 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.002 0.998 44 H 0.048 0.952 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 -4.048 6.025 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.124 4.124 4 H 0.117 0.883 5 C -0.188 4.188 6 C -0.216 4.216 7 H 0.155 0.845 8 C 0.320 3.680 9 O -0.482 6.482 10 N -0.339 5.339 11 C 0.015 3.985 12 C 0.054 3.946 13 H 0.051 0.949 14 C -0.162 4.162 15 C -0.140 4.140 16 C -0.175 4.175 17 C 0.053 3.947 18 N -0.326 5.326 19 C -0.367 4.367 20 H 0.076 0.924 21 C -0.228 4.228 22 N -0.570 5.570 23 Si 0.765 3.235 24 H -0.221 1.221 25 H -0.221 1.221 26 H -0.194 1.194 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.020 0.980 44 H 0.067 0.933 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.854 -3.600 6.250 9.950 hybrid contribution 0.256 0.144 -1.459 1.488 sum -6.598 -3.456 4.791 8.856 Atomic orbital electron populations 1.21732 0.94377 1.02443 1.01891 1.21179 0.96855 0.91769 1.02965 1.22487 0.90263 0.99740 0.99872 0.88327 1.23088 1.02269 1.02501 0.90937 1.22316 0.98475 0.98588 1.02228 0.84457 1.20087 0.82246 0.86084 0.79611 1.90585 1.54993 1.50834 1.51774 1.45977 1.06649 1.27848 1.53442 1.21240 0.94355 0.88006 0.94884 1.20877 0.90843 0.96500 0.86349 0.94935 1.21901 0.96646 0.97796 0.99848 1.21345 0.95231 1.01694 0.95715 1.22058 0.99860 0.98883 0.96695 1.20575 0.83215 0.92891 0.98046 1.44273 1.03656 1.84357 1.00332 1.19134 0.94293 1.32761 0.90515 0.92354 1.25462 0.98499 0.98133 1.00693 1.70119 1.24389 1.37536 1.24992 0.85830 0.79461 0.77151 0.81058 1.22144 1.22147 1.19444 0.91055 0.92954 0.92659 0.90550 0.90814 0.90610 0.86183 0.75164 0.91069 0.94007 0.92939 0.89979 0.90698 0.92337 0.91653 0.93706 0.98009 0.93324 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.87 71.98 0.71 -1.81 16 2 C -0.09 -1.80 6.22 30.59 0.19 -1.61 16 3 C -0.10 -2.84 5.25 -10.79 -0.06 -2.90 16 4 H 0.10 3.02 7.60 -2.39 -0.02 3.00 16 5 C -0.15 -4.51 9.88 30.59 0.30 -4.21 16 6 C -0.20 -6.16 5.91 -11.54 -0.07 -6.23 16 7 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 8 C 0.53 20.75 7.61 87.65 0.67 21.42 16 9 O -0.60 -26.66 16.26 -3.04 -0.05 -26.71 16 10 N -0.69 -27.07 3.85 -463.07 -1.78 -28.85 16 11 C 0.14 5.33 4.42 86.38 0.38 5.71 16 12 C 0.16 6.08 3.00 44.98 0.14 6.22 16 13 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 14 C -0.12 -3.85 5.37 30.67 0.16 -3.69 16 15 C -0.10 -3.06 5.88 30.62 0.18 -2.88 16 16 C -0.14 -4.86 6.08 30.67 0.19 -4.67 16 17 C 0.18 8.09 5.28 86.36 0.46 8.55 16 18 N -0.60 -27.64 2.97 -675.21 -2.01 -29.65 16 19 C -0.24 -11.97 7.03 84.03 0.59 -11.37 16 20 H 0.06 3.07 5.83 -2.91 -0.02 3.05 16 21 C -0.03 -1.65 4.93 84.86 0.42 -1.23 16 22 N -0.92 -51.05 11.28 21.65 0.24 -50.80 16 23 Si 0.94 43.64 29.58 68.60 2.03 45.66 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.08 1.36 7.88 -2.38 -0.02 1.35 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.12 3.08 8.03 -2.39 -0.02 3.06 16 34 H 0.41 16.81 7.44 -92.71 -0.69 16.12 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.04 1.79 7.39 -2.39 -0.02 1.77 16 37 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.05 2.54 6.19 -2.39 -0.01 2.52 16 45 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -60.88 352.81 2.96 -57.93 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.26 Total: 31.13 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 4.26 Total: 1.30 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -3.55 Total: -109.30 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -60.88 2.96 -57.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024666724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.261 kcal (2) G-P(sol) polarization free energy of solvation -60.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds