Wall clock time and date at job start Tue Mar 31 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47009 * 2 1 4 4 H 1.09007 * 115.56002 * 29.31295 * 3 2 1 5 5 C 1.53004 * 117.50110 * 243.62536 * 3 2 1 6 6 C 1.52997 * 117.50013 * 174.99987 * 3 2 1 7 7 H 1.09003 * 117.51702 * 0.02562 * 6 3 2 8 8 C 1.50705 * 117.50014 * 214.97964 * 6 3 2 9 9 O 1.21281 * 119.99667 * 359.97438 * 8 6 3 10 10 N 1.34771 * 119.99841 * 179.97438 * 8 6 3 11 11 C 1.46507 * 120.00070 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47337 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.70395 * 60.11942 * 12 11 10 14 14 C 1.53188 * 109.58365 * 180.47309 * 12 11 10 15 15 C 1.53045 * 109.30948 * 174.42039 * 14 12 11 16 16 C 1.53038 * 109.53992 * 298.63415 * 15 14 12 17 17 C 1.52769 * 109.38138 * 61.24174 * 16 15 14 18 18 N 1.46924 * 109.00514 * 305.58469 * 17 16 15 19 19 C 1.36933 * 120.63421 * 233.58249 * 18 17 16 20 20 H 1.08002 * 120.00777 * 144.70065 * 19 18 17 21 21 C 1.38817 * 120.00107 * 324.70079 * 19 18 17 22 22 N 1.31620 * 119.99753 * 336.93001 * 21 19 18 23 23 Si 1.86799 * 120.00322 * 156.92357 * 21 19 18 24 24 H 1.48503 * 109.46800 * 90.00141 * 23 21 19 25 25 H 1.48500 * 109.46961 * 330.00387 * 23 21 19 26 26 H 1.48499 * 109.47113 * 210.00262 * 23 21 19 27 27 H 1.08999 * 109.47506 * 59.99890 * 1 2 3 28 28 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47045 * 300.00057 * 1 2 3 30 30 H 1.09004 * 109.47000 * 240.00483 * 2 1 3 31 31 H 1.09001 * 109.47405 * 119.99577 * 2 1 3 32 32 H 1.08994 * 117.50016 * 145.02013 * 5 3 2 33 33 H 1.08999 * 117.49498 * 359.97438 * 5 3 2 34 34 H 0.96998 * 120.00297 * 0.02562 * 10 8 6 35 35 H 1.09000 * 109.46790 * 59.99619 * 11 10 8 36 36 H 1.08998 * 109.46686 * 300.00058 * 11 10 8 37 37 H 1.08996 * 109.50235 * 294.36947 * 14 12 11 38 38 H 1.08998 * 109.49775 * 54.47144 * 14 12 11 39 39 H 1.08999 * 109.46211 * 58.65888 * 15 14 12 40 40 H 1.09002 * 109.46107 * 178.61930 * 15 14 12 41 41 H 1.08992 * 109.50261 * 181.31797 * 16 15 14 42 42 H 1.09006 * 109.50090 * 301.41688 * 16 15 14 43 43 H 1.08999 * 109.50799 * 185.71086 * 17 16 15 44 44 H 1.08995 * 109.42875 * 65.42253 * 17 16 15 45 45 H 0.97002 * 120.00132 * 358.10080 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8439 1.9077 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7722 0.1957 8 6 4.0227 2.8621 0.8914 9 8 3.2156 3.6170 1.3911 10 7 5.3423 3.1001 1.0276 11 6 5.8018 4.2704 1.7797 12 6 7.3314 4.3069 1.7817 13 1 7.6988 4.3708 0.7575 14 6 7.8149 5.5233 2.5775 15 6 9.3402 5.4782 2.6939 16 6 9.7590 4.2122 3.4448 17 6 9.2968 2.9832 2.6639 18 7 7.8523 3.0887 2.4168 19 6 7.0069 2.0734 2.7767 20 1 6.0139 2.2993 3.1364 21 6 7.4262 0.7537 2.6792 22 7 8.3997 0.4317 1.8540 23 14 6.6089 -0.5653 3.7193 24 1 5.4563 -1.1370 2.9775 25 1 6.1310 0.0331 4.9916 26 1 7.5894 -1.6404 4.0154 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 2.7211 2.9428 -1.5343 33 1 3.0098 1.1859 -2.0156 34 1 5.9878 2.4965 0.6276 35 1 5.4381 4.2089 2.8053 36 1 5.4177 5.1767 1.3117 37 1 7.5162 6.4367 2.0632 38 1 7.3733 5.5051 3.5738 39 1 9.7805 5.4714 1.6969 40 1 9.6890 6.3555 3.2387 41 1 10.8439 4.1923 3.5479 42 1 9.2991 4.2063 4.4331 43 1 9.5035 2.0841 3.2444 44 1 9.8278 2.9370 1.7131 45 1 8.8056 1.1117 1.2939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024666725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:46 Heat of formation + Delta-G solvation = -16.427772 kcal Electronic energy + Delta-G solvation = -23113.586908 eV Core-core repulsion = 19938.351909 eV Total energy + Delta-G solvation = -3175.234998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.53918 -38.11697 -36.64143 -34.11842 -33.31208 -31.97994 -30.76572 -29.80164 -26.34390 -24.97279 -23.84436 -23.03700 -22.11114 -20.84772 -20.29866 -19.50354 -19.06652 -17.34532 -16.45902 -15.45390 -15.41982 -14.65796 -14.47144 -14.26326 -13.76761 -13.71550 -13.63867 -13.52652 -13.28919 -12.51223 -12.42820 -12.17930 -12.10948 -12.00492 -11.61677 -11.41959 -11.25253 -11.13309 -10.93445 -10.75349 -10.41741 -10.26153 -10.12919 -10.06761 -10.02476 -9.81323 -9.74903 -9.31395 -9.09419 -8.47510 -8.16331 -6.85394 -6.12027 -3.36164 3.06897 3.43390 3.49090 3.63840 3.82923 4.11284 4.49647 4.84832 4.99167 5.07686 5.08419 5.27160 5.32028 5.39284 5.42140 5.48968 5.54860 5.59079 5.65070 5.75677 5.85030 5.89212 5.97401 5.99937 6.05764 6.12398 6.16902 6.20624 6.23329 6.28672 6.31145 6.48784 6.51792 6.52951 6.57991 6.68299 6.85837 7.04426 7.14458 7.24600 8.07482 8.33757 8.54846 8.94794 9.03892 9.77005 10.25298 11.14567 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.005758 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.765670 B = 4861.482023 C = 6053.627085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.120 4.120 4 H 0.115 0.885 5 C -0.153 4.153 6 C -0.182 4.182 7 H 0.124 0.876 8 C 0.537 3.463 9 O -0.570 6.570 10 N -0.685 5.685 11 C 0.139 3.861 12 C 0.161 3.839 13 H 0.029 0.971 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.139 4.139 17 C 0.155 3.845 18 N -0.595 5.595 19 C -0.347 4.347 20 H 0.057 0.943 21 C -0.016 4.016 22 N -0.913 5.913 23 Si 1.060 2.940 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.287 1.287 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.017 0.983 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 3.324 -4.318 8.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.139 4.139 4 H 0.133 0.867 5 C -0.190 4.190 6 C -0.204 4.204 7 H 0.142 0.858 8 C 0.323 3.677 9 O -0.451 6.451 10 N -0.334 5.334 11 C 0.014 3.986 12 C 0.055 3.945 13 H 0.047 0.953 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.178 4.178 17 C 0.029 3.971 18 N -0.320 5.320 19 C -0.477 4.477 20 H 0.075 0.925 21 C -0.219 4.219 22 N -0.552 5.552 23 Si 0.890 3.110 24 H -0.220 1.220 25 H -0.219 1.219 26 H -0.213 1.213 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.251 0.749 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.035 0.965 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.403 2.213 -3.582 7.663 hybrid contribution 0.526 1.359 -0.388 1.508 sum -5.877 3.572 -3.970 7.941 Atomic orbital electron populations 1.21730 0.95492 1.01330 1.01914 1.21159 0.95895 0.94030 1.02293 1.22398 0.92098 0.98276 1.01104 0.86711 1.23040 1.02877 1.02575 0.90547 1.22330 0.97098 0.99780 1.01149 0.85763 1.19509 0.82670 0.85279 0.80222 1.90606 1.54445 1.49423 1.50591 1.45864 1.06413 1.27971 1.53192 1.21201 0.94053 0.86842 0.96460 1.20730 0.91138 0.88245 0.94411 0.95329 1.21936 0.96075 0.97776 1.00956 1.21357 0.95821 0.97454 0.99858 1.22006 0.98893 0.96929 0.99973 1.20823 0.84552 0.95636 0.96057 1.44124 1.02787 1.15834 1.69252 1.19893 0.98814 0.86454 1.42505 0.92510 1.25849 1.00056 0.97268 0.98760 1.70779 1.27350 1.36399 1.20657 0.83583 0.75492 0.75818 0.76074 1.21983 1.21894 1.21257 0.92736 0.92838 0.92589 0.91753 0.91282 0.88710 0.88215 0.74889 0.91738 0.92980 0.92933 0.92016 0.92866 0.93415 0.93294 0.92480 0.91123 0.96547 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.87 37.16 0.37 -1.15 16 2 C -0.10 -1.17 6.22 -26.73 -0.17 -1.33 16 3 C -0.12 -1.72 5.25 -90.62 -0.48 -2.20 16 4 H 0.11 1.79 7.60 -51.93 -0.39 1.40 16 5 C -0.15 -2.05 9.88 -26.73 -0.26 -2.31 16 6 C -0.18 -3.02 5.91 -91.77 -0.54 -3.56 16 7 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 8 C 0.54 10.68 7.61 -10.99 -0.08 10.59 16 9 O -0.57 -12.77 16.26 5.56 0.09 -12.68 16 10 N -0.69 -13.73 3.92 -60.29 -0.24 -13.97 16 11 C 0.14 2.73 4.44 -4.04 -0.02 2.72 16 12 C 0.16 3.15 3.01 -67.60 -0.20 2.95 16 13 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 14 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 15 C -0.11 -1.73 5.89 -26.69 -0.16 -1.89 16 16 C -0.14 -2.51 6.07 -26.83 -0.16 -2.67 16 17 C 0.15 3.38 4.71 -3.93 -0.02 3.37 16 18 N -0.59 -13.50 2.74 -165.04 -0.45 -13.95 16 19 C -0.35 -8.74 6.68 -15.06 -0.10 -8.84 16 20 H 0.06 1.52 6.14 -52.49 -0.32 1.20 16 21 C -0.02 -0.41 4.70 -17.43 -0.08 -0.49 16 22 N -0.91 -25.21 12.79 55.49 0.71 -24.50 16 23 Si 1.06 24.55 29.98 -169.99 -5.10 19.45 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.71 7.88 -51.93 -0.41 0.30 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 34 H 0.41 8.66 7.39 -40.82 -0.30 8.36 16 35 H 0.06 1.41 7.41 -51.93 -0.38 1.03 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.74 6.81 -51.93 -0.35 1.38 16 44 H 0.02 0.37 7.81 -51.93 -0.41 -0.04 16 45 H 0.27 7.48 6.69 -40.82 -0.27 7.20 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -28.32 352.35 -9.70 -38.02 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.98 Total: 9.45 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.05 Total: -7.13 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.02 Total: -52.42 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.10 Total: 19.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.32 -9.70 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024666725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.596 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds