Wall clock time and date at job start Tue Mar 31 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47009 * 2 1 4 4 H 1.09007 * 115.56002 * 29.31295 * 3 2 1 5 5 C 1.53004 * 117.50110 * 243.62536 * 3 2 1 6 6 C 1.52997 * 117.50013 * 174.99987 * 3 2 1 7 7 H 1.09003 * 117.51702 * 0.02562 * 6 3 2 8 8 C 1.50705 * 117.50014 * 214.97964 * 6 3 2 9 9 O 1.21281 * 119.99667 * 359.97438 * 8 6 3 10 10 N 1.34771 * 119.99841 * 179.97438 * 8 6 3 11 11 C 1.46507 * 120.00070 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47337 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.70395 * 60.11942 * 12 11 10 14 14 C 1.53188 * 109.58365 * 180.47309 * 12 11 10 15 15 C 1.53045 * 109.30948 * 174.42039 * 14 12 11 16 16 C 1.53038 * 109.53992 * 298.63415 * 15 14 12 17 17 C 1.52769 * 109.38138 * 61.24174 * 16 15 14 18 18 N 1.46924 * 109.00514 * 305.58469 * 17 16 15 19 19 C 1.36933 * 120.63421 * 233.58249 * 18 17 16 20 20 H 1.08002 * 120.00777 * 144.70065 * 19 18 17 21 21 C 1.38817 * 120.00107 * 324.70079 * 19 18 17 22 22 N 1.31620 * 119.99753 * 336.93001 * 21 19 18 23 23 Si 1.86799 * 120.00322 * 156.92357 * 21 19 18 24 24 H 1.48503 * 109.46800 * 90.00141 * 23 21 19 25 25 H 1.48500 * 109.46961 * 330.00387 * 23 21 19 26 26 H 1.48499 * 109.47113 * 210.00262 * 23 21 19 27 27 H 1.08999 * 109.47506 * 59.99890 * 1 2 3 28 28 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47045 * 300.00057 * 1 2 3 30 30 H 1.09004 * 109.47000 * 240.00483 * 2 1 3 31 31 H 1.09001 * 109.47405 * 119.99577 * 2 1 3 32 32 H 1.08994 * 117.50016 * 145.02013 * 5 3 2 33 33 H 1.08999 * 117.49498 * 359.97438 * 5 3 2 34 34 H 0.96998 * 120.00297 * 0.02562 * 10 8 6 35 35 H 1.09000 * 109.46790 * 59.99619 * 11 10 8 36 36 H 1.08998 * 109.46686 * 300.00058 * 11 10 8 37 37 H 1.08996 * 109.50235 * 294.36947 * 14 12 11 38 38 H 1.08998 * 109.49775 * 54.47144 * 14 12 11 39 39 H 1.08999 * 109.46211 * 58.65888 * 15 14 12 40 40 H 1.09002 * 109.46107 * 178.61930 * 15 14 12 41 41 H 1.08992 * 109.50261 * 181.31797 * 16 15 14 42 42 H 1.09006 * 109.50090 * 301.41688 * 16 15 14 43 43 H 1.08999 * 109.50799 * 185.71086 * 17 16 15 44 44 H 1.08995 * 109.42875 * 65.42253 * 17 16 15 45 45 H 0.97002 * 120.00132 * 358.10080 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8439 1.9077 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7722 0.1957 8 6 4.0227 2.8621 0.8914 9 8 3.2156 3.6170 1.3911 10 7 5.3423 3.1001 1.0276 11 6 5.8018 4.2704 1.7797 12 6 7.3314 4.3069 1.7817 13 1 7.6988 4.3708 0.7575 14 6 7.8149 5.5233 2.5775 15 6 9.3402 5.4782 2.6939 16 6 9.7590 4.2122 3.4448 17 6 9.2968 2.9832 2.6639 18 7 7.8523 3.0887 2.4168 19 6 7.0069 2.0734 2.7767 20 1 6.0139 2.2993 3.1364 21 6 7.4262 0.7537 2.6792 22 7 8.3997 0.4317 1.8540 23 14 6.6089 -0.5653 3.7193 24 1 5.4563 -1.1370 2.9775 25 1 6.1310 0.0331 4.9916 26 1 7.5894 -1.6404 4.0154 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 2.7211 2.9428 -1.5343 33 1 3.0098 1.1859 -2.0156 34 1 5.9878 2.4965 0.6276 35 1 5.4381 4.2089 2.8053 36 1 5.4177 5.1767 1.3117 37 1 7.5162 6.4367 2.0632 38 1 7.3733 5.5051 3.5738 39 1 9.7805 5.4714 1.6969 40 1 9.6890 6.3555 3.2387 41 1 10.8439 4.1923 3.5479 42 1 9.2991 4.2063 4.4331 43 1 9.5035 2.0841 3.2444 44 1 9.8278 2.9370 1.7131 45 1 8.8056 1.1117 1.2939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024666725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:46 Heat of formation + Delta-G solvation = -31.226339 kcal Electronic energy + Delta-G solvation = -23114.228622 eV Core-core repulsion = 19938.351909 eV Total energy + Delta-G solvation = -3175.876712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06253 -39.68160 -37.96543 -35.72307 -35.14527 -33.01582 -32.30505 -31.57491 -27.94187 -26.71988 -24.92330 -24.37881 -23.76928 -22.39555 -21.46847 -21.01182 -20.66652 -19.10643 -18.00568 -17.14355 -16.96628 -16.12960 -15.77737 -15.57985 -15.53482 -15.16212 -15.07120 -15.02004 -14.89936 -13.99801 -13.79520 -13.48080 -13.46572 -13.26566 -13.09765 -12.97277 -12.80281 -12.56949 -12.19419 -12.00396 -11.98952 -11.92780 -11.75988 -11.65705 -11.32328 -11.23858 -11.05907 -10.99559 -10.67105 -10.42066 -9.86716 -8.77880 -8.13897 -5.37999 1.53672 1.56703 1.61110 1.77022 2.34974 2.60446 2.86374 3.27498 3.45608 3.69934 3.78855 3.89265 3.90794 4.07376 4.15933 4.24762 4.27924 4.30828 4.43122 4.48369 4.51732 4.56261 4.66530 4.69772 4.74653 4.87644 4.90528 4.99498 5.00881 5.06870 5.14021 5.14916 5.22355 5.26722 5.28279 5.28532 5.32145 5.49041 5.56846 5.64084 6.02821 6.49060 6.71567 7.11844 7.33648 7.81795 8.30498 9.08459 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.005758 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.765670 B = 4861.482023 C = 6053.627085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.115 4.115 4 H 0.099 0.901 5 C -0.126 4.126 6 C -0.208 4.208 7 H 0.120 0.880 8 C 0.533 3.467 9 O -0.600 6.600 10 N -0.688 5.688 11 C 0.143 3.857 12 C 0.161 3.839 13 H 0.032 0.968 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.131 4.131 17 C 0.159 3.841 18 N -0.608 5.608 19 C -0.329 4.329 20 H 0.039 0.961 21 C -0.055 4.055 22 N -0.937 5.937 23 Si 1.094 2.906 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.290 1.290 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.409 0.591 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.009 0.991 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 4.071 -5.233 9.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.134 4.134 4 H 0.117 0.883 5 C -0.164 4.164 6 C -0.229 4.229 7 H 0.138 0.862 8 C 0.321 3.679 9 O -0.483 6.483 10 N -0.336 5.336 11 C 0.019 3.981 12 C 0.055 3.945 13 H 0.050 0.950 14 C -0.162 4.162 15 C -0.139 4.139 16 C -0.170 4.170 17 C 0.034 3.966 18 N -0.334 5.334 19 C -0.460 4.460 20 H 0.057 0.943 21 C -0.254 4.254 22 N -0.578 5.578 23 Si 0.921 3.079 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.216 1.216 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.245 0.755 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.027 0.973 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.813 2.984 -4.498 8.692 hybrid contribution 0.640 1.195 -0.098 1.359 sum -6.173 4.179 -4.596 8.758 Atomic orbital electron populations 1.21712 0.94004 1.02396 1.02066 1.21191 0.97177 0.92315 1.02540 1.22474 0.90151 0.99435 1.01300 0.88307 1.23177 0.99849 1.03439 0.89888 1.22283 0.98618 0.98224 1.03793 0.86178 1.20085 0.82186 0.85838 0.79837 1.90578 1.54972 1.50845 1.51942 1.45925 1.06602 1.27961 1.53074 1.21173 0.94317 0.87528 0.95113 1.20876 0.90789 0.88057 0.94746 0.95036 1.21894 0.96778 0.97419 1.00119 1.21345 0.94964 0.97269 1.00359 1.21896 1.00129 0.96092 0.98895 1.20707 0.84112 0.96145 0.95664 1.44290 1.02963 1.16331 1.69850 1.19786 0.98262 0.87087 1.40825 0.94350 1.26645 1.00432 0.98963 0.99378 1.70863 1.28829 1.36058 1.22062 0.83099 0.75154 0.74348 0.75267 1.20773 1.21737 1.21650 0.91769 0.91315 0.93306 0.90114 0.92434 0.88609 0.85344 0.75467 0.94396 0.91303 0.89950 0.93105 0.92135 0.90375 0.91107 0.93532 0.94636 0.97284 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.87 71.98 0.71 -1.98 16 2 C -0.09 -2.14 6.22 30.59 0.19 -1.95 16 3 C -0.11 -3.18 5.25 -10.79 -0.06 -3.24 16 4 H 0.10 3.07 7.60 -2.38 -0.02 3.06 16 5 C -0.13 -3.14 9.88 30.60 0.30 -2.84 16 6 C -0.21 -6.82 5.91 -11.54 -0.07 -6.89 16 7 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 8 C 0.53 21.46 7.61 87.66 0.67 22.12 16 9 O -0.60 -27.34 16.26 -3.03 -0.05 -27.39 16 10 N -0.69 -27.99 3.92 -463.05 -1.81 -29.80 16 11 C 0.14 5.65 4.44 86.38 0.38 6.04 16 12 C 0.16 6.18 3.01 44.97 0.14 6.32 16 13 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 14 C -0.12 -3.88 5.37 30.67 0.16 -3.72 16 15 C -0.10 -2.98 5.89 30.62 0.18 -2.80 16 16 C -0.13 -4.55 6.07 30.53 0.19 -4.36 16 17 C 0.16 7.00 4.71 86.22 0.41 7.41 16 18 N -0.61 -27.88 2.74 -676.05 -1.85 -29.74 16 19 C -0.33 -16.93 6.68 84.04 0.56 -16.36 16 20 H 0.04 2.12 6.14 -2.91 -0.02 2.10 16 21 C -0.06 -2.94 4.70 84.86 0.40 -2.54 16 22 N -0.94 -52.89 12.79 21.65 0.28 -52.61 16 23 Si 1.09 50.38 29.98 68.60 2.06 52.43 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.56 7.88 -2.38 -0.02 1.54 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.13 2.48 8.03 -2.39 -0.02 2.46 16 34 H 0.41 17.47 7.39 -92.71 -0.69 16.79 16 35 H 0.04 1.69 7.41 -2.39 -0.02 1.68 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 43 H 0.03 1.79 6.81 -2.39 -0.02 1.77 16 44 H 0.01 0.41 7.81 -2.39 -0.02 0.39 16 45 H 0.26 14.78 6.69 -92.71 -0.62 14.16 16 Total: -1.00 -62.32 352.35 3.19 -59.12 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.42 Total: 32.77 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.16 Total: -4.79 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -3.39 Total: -112.15 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.06 Total: 52.43 kcal Total: -62.32 3.19 -59.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024666725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.897 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds