Wall clock time and date at job start Tue Mar 31 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 H 1.08991 * 115.56564 * 29.30859 * 3 2 1 5 5 C 1.52998 * 117.49512 * 243.61836 * 3 2 1 6 6 C 1.53002 * 60.00092 * 252.51188 * 5 3 2 7 7 H 1.09001 * 117.49596 * 107.51370 * 6 5 3 8 8 C 1.50703 * 117.49863 * 252.51026 * 6 5 3 9 9 O 1.21287 * 119.99816 * 68.60945 * 8 6 5 10 10 N 1.34772 * 120.00264 * 248.60823 * 8 6 5 11 11 C 1.46931 * 120.63044 * 359.97438 * 10 8 6 12 12 C 1.53189 * 108.77693 * 126.41113 * 11 10 8 13 13 C 1.53041 * 109.31253 * 54.63831 * 12 11 10 14 14 C 1.53042 * 109.53446 * 298.63115 * 13 12 11 15 15 H 1.08994 * 109.52850 * 301.39996 * 14 13 12 16 16 N 1.46503 * 109.49702 * 181.31773 * 14 13 12 17 17 C 1.46505 * 119.99901 * 300.16158 * 16 14 13 18 18 C 1.36934 * 119.99852 * 120.16106 * 16 14 13 19 19 H 1.07999 * 120.00560 * 336.20687 * 18 16 14 20 20 C 1.38818 * 119.99678 * 156.20054 * 18 16 14 21 21 N 1.31618 * 120.00246 * 330.10160 * 20 18 16 22 22 Si 1.86802 * 119.99444 * 150.37050 * 20 18 16 23 23 H 1.48501 * 109.46730 * 179.72616 * 22 20 18 24 24 H 1.48497 * 109.47211 * 299.72475 * 22 20 18 25 25 H 1.48499 * 109.47122 * 59.73222 * 22 20 18 26 26 C 1.46920 * 120.63453 * 179.97438 * 10 8 6 27 27 H 1.08994 * 109.47321 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47237 * 300.00756 * 1 2 3 29 29 H 1.09001 * 109.47095 * 60.00109 * 1 2 3 30 30 H 1.09000 * 109.47237 * 239.99244 * 2 1 3 31 31 H 1.09005 * 109.46612 * 119.99782 * 2 1 3 32 32 H 1.09002 * 117.50078 * 145.02464 * 5 3 2 33 33 H 1.08998 * 117.50229 * 359.97438 * 5 3 2 34 34 H 1.09002 * 109.58416 * 246.20447 * 11 10 8 35 35 H 1.09003 * 109.58345 * 6.47847 * 11 10 8 36 36 H 1.09000 * 109.49334 * 174.58653 * 12 11 10 37 37 H 1.08998 * 109.49763 * 294.68202 * 12 11 10 38 38 H 1.08997 * 109.46238 * 178.61635 * 13 12 11 39 39 H 1.08997 * 109.46410 * 58.64953 * 13 12 11 40 40 H 1.08998 * 109.47221 * 272.97884 * 17 16 14 41 41 H 1.09003 * 109.46818 * 32.98336 * 17 16 14 42 42 H 1.09001 * 109.46589 * 152.97694 * 17 16 14 43 43 H 0.97001 * 119.99714 * 354.90369 * 21 20 18 44 44 H 1.09000 * 109.58680 * 113.79815 * 26 10 8 45 45 H 1.09003 * 109.70349 * 353.44486 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8440 1.9074 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7720 0.1960 8 6 4.0229 2.8619 0.8914 9 8 3.2159 3.6168 1.3912 10 7 5.3425 3.1000 1.0274 11 6 6.3322 2.1943 0.4282 12 6 7.2873 3.0151 -0.4440 13 6 7.8937 4.1437 0.3931 14 6 6.7796 5.0673 0.8906 15 1 6.2351 5.4734 0.0382 16 7 7.3638 6.1648 1.6655 17 6 8.1502 5.8755 2.8673 18 6 7.1749 7.4611 1.2665 19 1 6.9513 7.6809 0.2330 20 6 7.2705 8.4926 2.1905 21 7 6.9572 8.2784 3.4508 22 14 7.8367 10.1867 1.6436 23 1 7.8468 11.1056 2.8102 24 1 9.2058 10.0918 1.0764 25 1 6.9076 10.7093 0.6099 26 6 5.8187 4.2700 1.7777 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.7215 2.9426 -1.5344 33 1 3.0100 1.1855 -2.0155 34 1 6.8953 1.6951 1.2168 35 1 5.8229 1.4501 -0.1842 36 1 8.0833 2.3709 -0.8174 37 1 6.7382 3.4400 -1.2843 38 1 8.5924 4.7144 -0.2186 39 1 8.4218 3.7191 1.2469 40 1 7.4852 5.8027 3.7278 41 1 8.6798 4.9318 2.7364 42 1 8.8707 6.6768 3.0315 43 1 6.5895 7.4223 3.7203 44 1 6.3399 3.9403 2.6765 45 1 4.9721 4.8978 2.0557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027585152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:13 Heat of formation + Delta-G solvation = -0.700113 kcal Electronic energy + Delta-G solvation = -22787.772168 eV Core-core repulsion = 19613.219172 eV Total energy + Delta-G solvation = -3174.552996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.21594 -38.12538 -36.69460 -35.28636 -32.52463 -32.10932 -31.25838 -28.84883 -26.18892 -25.78107 -24.17079 -23.75341 -22.72916 -21.63035 -20.67502 -19.41047 -18.48637 -17.42815 -17.12365 -15.87798 -15.05253 -14.89346 -14.81949 -14.41843 -14.09374 -14.03882 -13.63342 -13.51613 -13.18532 -12.93484 -12.62372 -12.41068 -12.33993 -12.21398 -12.00066 -11.55785 -11.35944 -11.20940 -10.98658 -10.75197 -10.62632 -10.52641 -10.40003 -10.35727 -10.10999 -10.03863 -9.95931 -9.57101 -9.43338 -8.40405 -8.27710 -6.92372 -6.06623 -3.18180 2.65731 3.14091 3.52466 3.55288 3.73653 3.75929 4.36848 4.59442 4.63215 4.65649 4.87577 4.95068 5.03363 5.10748 5.13041 5.21417 5.26924 5.33883 5.48402 5.49403 5.54139 5.58779 5.70197 5.71803 5.79633 5.84516 5.90453 5.93254 5.94280 6.07445 6.16856 6.22062 6.30718 6.43426 6.50229 6.68604 6.75956 6.92070 6.98884 7.10688 7.67596 8.01391 8.42945 8.58461 9.12736 9.86921 10.24848 11.21607 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.003904 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.227152 B = 7169.505810 C = 7662.452567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.121 4.121 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.189 4.189 7 H 0.121 0.879 8 C 0.538 3.462 9 O -0.542 6.542 10 N -0.603 5.603 11 C 0.109 3.891 12 C -0.130 4.130 13 C -0.132 4.132 14 C 0.169 3.831 15 H 0.065 0.935 16 N -0.593 5.593 17 C 0.133 3.867 18 C -0.361 4.361 19 H 0.058 0.942 20 C -0.019 4.019 21 N -0.908 5.908 22 Si 1.061 2.939 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.097 3.903 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.009 0.991 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.270 0.730 44 H 0.058 0.942 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 -18.631 -8.825 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.139 4.139 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.210 4.210 7 H 0.139 0.861 8 C 0.326 3.674 9 O -0.420 6.420 10 N -0.336 5.336 11 C -0.015 4.015 12 C -0.169 4.169 13 C -0.172 4.172 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.316 5.316 17 C -0.012 4.012 18 C -0.490 4.490 19 H 0.076 0.924 20 C -0.223 4.223 21 N -0.547 5.547 22 Si 0.891 3.109 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.027 4.027 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.475 -16.636 -7.986 18.989 hybrid contribution -0.193 -1.580 -0.493 1.667 sum -4.668 -18.217 -8.480 20.629 Atomic orbital electron populations 1.21740 0.95225 1.01492 1.02244 1.21142 0.96251 0.93724 1.01969 1.22478 0.91685 0.98553 1.01215 0.86460 1.23082 1.02105 1.03173 0.90210 1.22330 0.97290 0.99172 1.02176 0.86079 1.19653 0.82110 0.85557 0.80071 1.90698 1.53463 1.48767 1.49058 1.48171 1.04994 1.26896 1.53550 1.21742 0.90765 0.92168 0.96778 1.21892 0.98482 0.97953 0.98575 1.22042 0.99527 0.96414 0.99186 1.20655 0.91247 0.88034 0.94025 0.91631 1.43988 1.56731 1.01934 1.28897 1.20963 0.94158 0.97473 0.88627 1.19941 1.51720 0.82763 0.94550 0.92411 1.25788 0.99183 1.02677 0.94623 1.70788 1.39520 1.26076 1.18332 0.83582 0.76355 0.75817 0.75130 1.21146 1.22099 1.21980 1.22508 0.99598 0.85820 0.94758 0.92724 0.92451 0.92511 0.91758 0.91520 0.88268 0.87958 0.91744 0.90065 0.91222 0.91674 0.91633 0.92417 0.97279 0.96456 0.92939 0.91894 0.92407 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.87 37.16 0.37 -0.78 16 2 C -0.09 -0.78 6.21 -26.73 -0.17 -0.94 16 3 C -0.12 -1.33 5.25 -90.62 -0.48 -1.81 16 4 H 0.12 1.56 7.60 -51.93 -0.39 1.16 16 5 C -0.15 -1.53 9.88 -26.73 -0.26 -1.80 16 6 C -0.19 -2.25 4.69 -91.77 -0.43 -2.68 16 7 H 0.12 1.15 6.81 -51.93 -0.35 0.79 16 8 C 0.54 9.07 7.48 -10.99 -0.08 8.98 16 9 O -0.54 -11.54 15.67 5.55 0.09 -11.45 16 10 N -0.60 -9.82 2.97 -172.78 -0.51 -10.34 16 11 C 0.11 1.31 6.30 -3.71 -0.02 1.29 16 12 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 13 C -0.13 -2.20 5.11 -26.69 -0.14 -2.34 16 14 C 0.17 3.54 2.75 -67.82 -0.19 3.35 16 15 H 0.07 1.49 7.87 -51.93 -0.41 1.08 16 16 N -0.59 -14.88 2.69 -173.36 -0.47 -15.34 16 17 C 0.13 3.16 7.97 59.85 0.48 3.64 16 18 C -0.36 -10.23 9.39 -15.06 -0.14 -10.37 16 19 H 0.06 1.65 7.95 -52.49 -0.42 1.24 16 20 C -0.02 -0.56 4.60 -17.43 -0.08 -0.64 16 21 N -0.91 -27.70 12.75 55.49 0.71 -26.99 16 22 Si 1.06 25.65 30.01 -169.99 -5.10 20.55 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.10 1.94 5.79 -3.73 -0.02 1.92 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.77 5.67 -51.93 -0.29 0.47 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.95 6.73 -51.93 -0.35 0.60 16 40 H 0.01 0.23 6.87 -51.93 -0.36 -0.13 16 41 H 0.02 0.35 6.46 -51.93 -0.34 0.01 16 42 H 0.05 1.35 7.28 -51.93 -0.38 0.97 16 43 H 0.27 8.33 6.39 -40.82 -0.26 8.07 16 44 H 0.06 1.15 7.51 -51.93 -0.39 0.76 16 45 H 0.09 2.13 7.01 -51.93 -0.36 1.76 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -32.86 350.13 -9.06 -41.92 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.73 Total: 0.36 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.33 Total: -3.98 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.27 Total: -52.67 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.10 Total: 20.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.86 -9.06 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027585152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.220 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds