Wall clock time and date at job start Tue Mar 31 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 H 1.08991 * 115.56564 * 29.30859 * 3 2 1 5 5 C 1.52998 * 117.49512 * 243.61836 * 3 2 1 6 6 C 1.53002 * 60.00092 * 252.51188 * 5 3 2 7 7 H 1.09001 * 117.49596 * 107.51370 * 6 5 3 8 8 C 1.50703 * 117.49863 * 252.51026 * 6 5 3 9 9 O 1.21287 * 119.99816 * 68.60945 * 8 6 5 10 10 N 1.34772 * 120.00264 * 248.60823 * 8 6 5 11 11 C 1.46931 * 120.63044 * 359.97438 * 10 8 6 12 12 C 1.53189 * 108.77693 * 126.41113 * 11 10 8 13 13 C 1.53041 * 109.31253 * 54.63831 * 12 11 10 14 14 C 1.53042 * 109.53446 * 298.63115 * 13 12 11 15 15 H 1.08994 * 109.52850 * 301.39996 * 14 13 12 16 16 N 1.46503 * 109.49702 * 181.31773 * 14 13 12 17 17 C 1.46505 * 119.99901 * 300.16158 * 16 14 13 18 18 C 1.36934 * 119.99852 * 120.16106 * 16 14 13 19 19 H 1.07999 * 120.00560 * 336.20687 * 18 16 14 20 20 C 1.38818 * 119.99678 * 156.20054 * 18 16 14 21 21 N 1.31618 * 120.00246 * 330.10160 * 20 18 16 22 22 Si 1.86802 * 119.99444 * 150.37050 * 20 18 16 23 23 H 1.48501 * 109.46730 * 179.72616 * 22 20 18 24 24 H 1.48497 * 109.47211 * 299.72475 * 22 20 18 25 25 H 1.48499 * 109.47122 * 59.73222 * 22 20 18 26 26 C 1.46920 * 120.63453 * 179.97438 * 10 8 6 27 27 H 1.08994 * 109.47321 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47237 * 300.00756 * 1 2 3 29 29 H 1.09001 * 109.47095 * 60.00109 * 1 2 3 30 30 H 1.09000 * 109.47237 * 239.99244 * 2 1 3 31 31 H 1.09005 * 109.46612 * 119.99782 * 2 1 3 32 32 H 1.09002 * 117.50078 * 145.02464 * 5 3 2 33 33 H 1.08998 * 117.50229 * 359.97438 * 5 3 2 34 34 H 1.09002 * 109.58416 * 246.20447 * 11 10 8 35 35 H 1.09003 * 109.58345 * 6.47847 * 11 10 8 36 36 H 1.09000 * 109.49334 * 174.58653 * 12 11 10 37 37 H 1.08998 * 109.49763 * 294.68202 * 12 11 10 38 38 H 1.08997 * 109.46238 * 178.61635 * 13 12 11 39 39 H 1.08997 * 109.46410 * 58.64953 * 13 12 11 40 40 H 1.08998 * 109.47221 * 272.97884 * 17 16 14 41 41 H 1.09003 * 109.46818 * 32.98336 * 17 16 14 42 42 H 1.09001 * 109.46589 * 152.97694 * 17 16 14 43 43 H 0.97001 * 119.99714 * 354.90369 * 21 20 18 44 44 H 1.09000 * 109.58680 * 113.79815 * 26 10 8 45 45 H 1.09003 * 109.70349 * 353.44486 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8440 1.9074 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7720 0.1960 8 6 4.0229 2.8619 0.8914 9 8 3.2159 3.6168 1.3912 10 7 5.3425 3.1000 1.0274 11 6 6.3322 2.1943 0.4282 12 6 7.2873 3.0151 -0.4440 13 6 7.8937 4.1437 0.3931 14 6 6.7796 5.0673 0.8906 15 1 6.2351 5.4734 0.0382 16 7 7.3638 6.1648 1.6655 17 6 8.1502 5.8755 2.8673 18 6 7.1749 7.4611 1.2665 19 1 6.9513 7.6809 0.2330 20 6 7.2705 8.4926 2.1905 21 7 6.9572 8.2784 3.4508 22 14 7.8367 10.1867 1.6436 23 1 7.8468 11.1056 2.8102 24 1 9.2058 10.0918 1.0764 25 1 6.9076 10.7093 0.6099 26 6 5.8187 4.2700 1.7777 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.7215 2.9426 -1.5344 33 1 3.0100 1.1855 -2.0155 34 1 6.8953 1.6951 1.2168 35 1 5.8229 1.4501 -0.1842 36 1 8.0833 2.3709 -0.8174 37 1 6.7382 3.4400 -1.2843 38 1 8.5924 4.7144 -0.2186 39 1 8.4218 3.7191 1.2469 40 1 7.4852 5.8027 3.7278 41 1 8.6798 4.9318 2.7364 42 1 8.8707 6.6768 3.0315 43 1 6.5895 7.4223 3.7203 44 1 6.3399 3.9403 2.6765 45 1 4.9721 4.8978 2.0557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027585152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:12 Heat of formation + Delta-G solvation = -20.529715 kcal Electronic energy + Delta-G solvation = -22788.632044 eV Core-core repulsion = 19613.219172 eV Total energy + Delta-G solvation = -3175.412872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50252 -39.46038 -37.91203 -37.02118 -34.11264 -32.91027 -32.83370 -30.57948 -28.21773 -27.08285 -25.44128 -24.76030 -24.06967 -23.12940 -21.54102 -20.90649 -19.83553 -19.37745 -18.41563 -17.19409 -16.58310 -16.27231 -16.10419 -15.51014 -15.49752 -15.33936 -15.27236 -14.97998 -14.75422 -14.11955 -13.94350 -13.76765 -13.42363 -13.36532 -13.12520 -12.99488 -12.83471 -12.48326 -12.28156 -12.21178 -12.01662 -11.94239 -11.89122 -11.84387 -11.66156 -11.49771 -11.26844 -10.93614 -10.80729 -10.46238 -9.79700 -9.00644 -8.33066 -5.42990 1.41212 1.54806 1.62185 1.81717 1.87643 2.62846 2.82448 3.13673 3.38905 3.46827 3.71917 3.79595 3.88645 3.93625 4.03962 4.13496 4.17622 4.25220 4.26709 4.47366 4.51035 4.54709 4.56449 4.65581 4.75885 4.77220 4.82576 4.83859 4.92145 4.95194 4.98520 5.06330 5.10741 5.14994 5.22760 5.29791 5.34803 5.42118 5.44505 5.49667 5.77623 6.31118 6.40491 6.98735 7.11848 7.73071 8.10093 8.91580 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.003904 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.227152 B = 7169.505810 C = 7662.452567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.126 4.126 4 H 0.081 0.919 5 C -0.132 4.132 6 C -0.188 4.188 7 H 0.161 0.839 8 C 0.526 3.474 9 O -0.603 6.603 10 N -0.603 5.603 11 C 0.103 3.897 12 C -0.121 4.121 13 C -0.121 4.121 14 C 0.168 3.832 15 H 0.036 0.964 16 N -0.611 5.611 17 C 0.147 3.853 18 C -0.368 4.368 19 H 0.048 0.952 20 C -0.072 4.072 21 N -0.935 5.935 22 Si 1.114 2.886 23 H -0.291 1.291 24 H -0.275 1.275 25 H -0.279 1.279 26 C 0.112 3.888 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.066 0.934 40 H -0.011 1.011 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.253 0.747 44 H 0.059 0.941 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -21.981 -11.260 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.145 4.145 4 H 0.100 0.900 5 C -0.170 4.170 6 C -0.209 4.209 7 H 0.178 0.822 8 C 0.317 3.683 9 O -0.485 6.485 10 N -0.334 5.334 11 C -0.018 4.018 12 C -0.160 4.160 13 C -0.161 4.161 14 C 0.061 3.939 15 H 0.055 0.945 16 N -0.335 5.335 17 C 0.002 3.998 18 C -0.498 4.498 19 H 0.066 0.934 20 C -0.270 4.270 21 N -0.576 5.576 22 Si 0.938 3.062 23 H -0.217 1.217 24 H -0.201 1.201 25 H -0.205 1.205 26 C -0.013 4.013 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.007 0.993 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.166 -20.055 -10.469 22.844 hybrid contribution -0.662 -0.567 0.241 0.905 sum -3.829 -20.622 -10.228 23.336 Atomic orbital electron populations 1.21758 0.95228 1.02346 1.01562 1.21148 0.96223 0.91555 1.03368 1.22511 0.90720 0.99765 1.01490 0.90025 1.23205 1.00307 1.03039 0.90402 1.22358 0.98270 0.97753 1.02488 0.82154 1.20682 0.81639 0.86461 0.79562 1.90673 1.55028 1.51223 1.51560 1.48263 1.06048 1.26109 1.53012 1.22160 0.90122 0.91831 0.97702 1.21883 0.99574 0.96939 0.97585 1.21892 0.97516 0.96701 0.99940 1.20786 0.92778 0.87863 0.92504 0.94523 1.44222 1.57599 1.02097 1.29537 1.20788 0.93194 0.98299 0.87540 1.20176 1.50795 0.84682 0.94117 0.93385 1.27213 0.99143 1.06328 0.94268 1.70922 1.41914 1.25372 1.19439 0.82892 0.76971 0.71506 0.74855 1.21692 1.20081 1.20490 1.21942 0.97275 0.86950 0.95157 0.91026 0.93963 0.92515 0.89165 0.91132 0.90545 0.83855 0.89774 0.86028 0.86924 0.92149 0.92479 0.91557 0.99308 0.92565 0.95385 0.93685 0.92316 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.87 71.98 0.71 -1.35 16 2 C -0.09 -1.16 6.21 30.59 0.19 -0.97 16 3 C -0.13 -2.60 5.25 -10.79 -0.06 -2.66 16 4 H 0.08 2.29 7.60 -2.39 -0.02 2.27 16 5 C -0.13 -2.37 9.88 30.59 0.30 -2.07 16 6 C -0.19 -3.99 4.69 -11.54 -0.05 -4.05 16 7 H 0.16 2.14 6.81 -2.39 -0.02 2.12 16 8 C 0.53 17.82 7.48 87.66 0.66 18.47 16 9 O -0.60 -27.45 15.67 -3.05 -0.05 -27.50 16 10 N -0.60 -19.20 2.97 -818.95 -2.43 -21.64 16 11 C 0.10 2.05 6.30 86.36 0.54 2.59 16 12 C -0.12 -2.57 6.08 30.67 0.19 -2.39 16 13 C -0.12 -3.81 5.11 30.62 0.16 -3.65 16 14 C 0.17 7.21 2.75 45.06 0.12 7.33 16 15 H 0.04 1.75 7.87 -2.39 -0.02 1.73 16 16 N -0.61 -31.74 2.69 -702.38 -1.89 -33.63 16 17 C 0.15 7.16 7.97 127.77 1.02 8.18 16 18 C -0.37 -21.62 9.39 84.04 0.79 -20.83 16 19 H 0.05 2.86 7.95 -2.91 -0.02 2.83 16 20 C -0.07 -4.29 4.60 84.86 0.39 -3.90 16 21 N -0.94 -59.50 12.75 21.65 0.28 -59.22 16 22 Si 1.11 52.79 30.01 68.60 2.06 54.85 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.11 4.68 5.79 86.35 0.50 5.18 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.80 7.88 -2.39 -0.02 0.78 16 31 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.14 1.45 8.03 -2.39 -0.02 1.43 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.53 5.67 -2.39 -0.01 1.52 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 1.98 6.73 -2.39 -0.02 1.96 16 40 H -0.01 -0.58 6.87 -2.39 -0.02 -0.60 16 41 H 0.06 2.25 6.46 -2.39 -0.02 2.23 16 42 H 0.03 1.47 7.28 -2.39 -0.02 1.45 16 43 H 0.25 16.55 6.39 -92.71 -0.59 15.96 16 44 H 0.06 2.40 7.51 -2.39 -0.02 2.38 16 45 H 0.04 1.88 7.01 -2.39 -0.02 1.86 16 Total: -1.00 -79.31 350.13 4.55 -74.76 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.13 Total: 12.49 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.46 Total: -0.12 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.05 Total: -114.49 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 2.06 Total: 54.85 kcal Total: -79.31 4.55 -74.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027585152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.235 kcal (2) G-P(sol) polarization free energy of solvation -79.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds