Wall clock time and date at job start Tue Mar 31 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47055 * 2 1 4 4 H 1.09001 * 115.54925 * 29.32552 * 3 2 1 5 5 C 1.52998 * 117.51606 * 243.63215 * 3 2 1 6 6 C 1.53001 * 117.50026 * 175.00023 * 3 2 1 7 7 H 1.09001 * 117.49685 * 0.02562 * 6 3 2 8 8 C 1.50690 * 117.49805 * 215.00107 * 6 3 2 9 9 O 1.21285 * 120.00478 * 0.02562 * 8 6 3 10 10 N 1.34781 * 119.99949 * 179.97438 * 8 6 3 11 11 C 1.46919 * 120.62947 * 0.02562 * 10 8 6 12 12 C 1.53199 * 108.77459 * 233.60711 * 11 10 8 13 13 C 1.53040 * 109.31351 * 305.36668 * 12 11 10 14 14 C 1.53045 * 109.53869 * 61.36400 * 13 12 11 15 15 H 1.08995 * 109.49522 * 58.61839 * 14 13 12 16 16 N 1.46499 * 109.49503 * 178.68574 * 14 13 12 17 17 C 1.46496 * 120.00457 * 59.66201 * 16 14 13 18 18 C 1.36938 * 119.99250 * 239.93163 * 16 14 13 19 19 H 1.07996 * 120.00717 * 342.43114 * 18 16 14 20 20 C 1.38815 * 119.99729 * 162.43509 * 18 16 14 21 21 N 1.31625 * 119.99679 * 344.07507 * 20 18 16 22 22 Si 1.86791 * 120.00209 * 164.07193 * 20 18 16 23 23 H 1.48503 * 109.47167 * 90.00015 * 22 20 18 24 24 H 1.48500 * 109.47527 * 209.99617 * 22 20 18 25 25 H 1.48500 * 109.47329 * 330.00219 * 22 20 18 26 26 C 1.46937 * 120.60361 * 180.02562 * 10 8 6 27 27 H 1.09001 * 109.47104 * 60.00498 * 1 2 3 28 28 H 1.08999 * 109.46799 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47499 * 299.99922 * 1 2 3 30 30 H 1.08998 * 109.47499 * 240.00078 * 2 1 3 31 31 H 1.08998 * 109.47372 * 119.99951 * 2 1 3 32 32 H 1.08996 * 117.49986 * 145.03075 * 5 3 2 33 33 H 1.08997 * 117.50270 * 0.02562 * 5 3 2 34 34 H 1.08999 * 109.58587 * 113.82539 * 11 10 8 35 35 H 1.09001 * 109.58993 * 353.39239 * 11 10 8 36 36 H 1.08997 * 109.49521 * 185.41119 * 12 11 10 37 37 H 1.09006 * 109.51952 * 65.33361 * 12 11 10 38 38 H 1.09004 * 109.45887 * 301.34384 * 13 12 11 39 39 H 1.08994 * 109.44996 * 181.37850 * 13 12 11 40 40 H 1.09002 * 109.47041 * 265.10647 * 17 16 14 41 41 H 1.09001 * 109.47048 * 25.10022 * 17 16 14 42 42 H 1.08992 * 109.47332 * 145.10449 * 17 16 14 43 43 H 0.97003 * 119.99714 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.61416 * 6.61748 * 26 10 8 45 45 H 1.08998 * 109.55879 * 246.19684 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8437 1.9081 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1957 8 6 4.0227 2.8618 0.8918 9 8 3.2157 3.6161 1.3926 10 7 5.3423 3.0998 1.0280 11 6 6.3320 2.1950 0.4276 12 6 7.3135 1.7465 1.5149 13 6 7.9177 2.9793 2.1912 14 6 6.8057 3.7973 2.8519 15 1 6.2831 3.1783 3.5812 16 7 7.3886 4.9603 3.5256 17 6 8.1516 5.9462 2.7563 18 6 7.2247 5.1228 4.8754 19 1 6.4517 4.5765 5.3953 20 6 8.0523 5.9899 5.5755 21 7 9.1741 6.4121 5.0314 22 14 7.5740 6.5577 7.2895 23 1 8.1261 5.6150 8.2954 24 1 8.1219 7.9166 7.5318 25 1 6.0939 6.5930 7.4043 26 6 5.8178 4.2692 1.7799 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7210 2.9434 -1.5338 33 1 3.0090 1.1869 -2.0161 34 1 6.8738 2.7175 -0.3607 35 1 5.8257 1.3244 0.0108 36 1 8.1086 1.1522 1.0646 37 1 6.7862 1.1464 2.2566 38 1 8.4242 3.5913 1.4448 39 1 8.6348 2.6629 2.9486 40 1 9.2136 5.7068 2.8109 41 1 7.8275 5.9251 1.7158 42 1 7.9815 6.9403 3.1697 43 1 9.7526 7.0177 5.5208 44 1 4.9727 4.7669 2.2553 45 1 6.3173 4.9608 1.1014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027585153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:17 Heat of formation + Delta-G solvation = 4.836211 kcal Electronic energy + Delta-G solvation = -22691.629481 eV Core-core repulsion = 19517.316559 eV Total energy + Delta-G solvation = -3174.312923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.20832 -38.07143 -36.65787 -35.07442 -32.44236 -32.05547 -31.28307 -28.86715 -26.04840 -25.75722 -24.17324 -23.83688 -22.83545 -21.58001 -20.67710 -19.28312 -18.51668 -17.20383 -16.70557 -15.86495 -15.33543 -14.87866 -14.69694 -14.39608 -14.04264 -14.01641 -13.66815 -13.53161 -12.83787 -12.66015 -12.54318 -12.50349 -12.31872 -12.21267 -11.89428 -11.52289 -11.22342 -11.03639 -10.92944 -10.84737 -10.60832 -10.43952 -10.37500 -10.29280 -10.13478 -10.07892 -9.83579 -9.76512 -9.48064 -8.58207 -8.28879 -6.79153 -5.70532 -3.11475 2.64931 3.16720 3.41017 3.47702 3.51501 3.73775 4.37534 4.52521 4.61864 4.64637 4.88448 4.96642 5.06383 5.14031 5.20550 5.23661 5.32860 5.46008 5.47792 5.54940 5.59113 5.62966 5.72050 5.78635 5.81505 5.88506 5.90865 5.94161 6.02107 6.17908 6.21779 6.24443 6.39743 6.53139 6.68250 6.81645 6.95128 7.01161 7.43098 7.68367 7.72670 7.84552 8.37741 8.43941 9.25371 9.89094 10.35388 11.34738 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.003864 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.921242 B = 7244.538633 C = 7831.902419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.120 4.120 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.189 4.189 7 H 0.123 0.877 8 C 0.540 3.460 9 O -0.545 6.545 10 N -0.602 5.602 11 C 0.109 3.891 12 C -0.133 4.133 13 C -0.132 4.132 14 C 0.170 3.830 15 H 0.064 0.936 16 N -0.594 5.594 17 C 0.163 3.837 18 C -0.253 4.253 19 H 0.070 0.930 20 C 0.000 4.000 21 N -0.909 5.909 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.097 3.903 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.028 0.972 41 H -0.002 1.002 42 H 0.047 0.953 43 H 0.252 0.748 44 H 0.089 0.911 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -13.133 -14.117 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.139 4.139 4 H 0.135 0.865 5 C -0.187 4.187 6 C -0.210 4.210 7 H 0.141 0.859 8 C 0.327 3.673 9 O -0.423 6.423 10 N -0.334 5.334 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.172 4.172 14 C 0.060 3.940 15 H 0.082 0.918 16 N -0.316 5.316 17 C 0.019 3.981 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.198 4.198 21 N -0.554 5.554 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.027 4.027 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.534 -12.557 -13.751 20.921 hybrid contribution 0.212 0.333 0.949 1.028 sum -9.323 -12.224 -12.802 20.006 Atomic orbital electron populations 1.21738 0.95251 1.01513 1.02182 1.21146 0.96225 0.93734 1.02051 1.22474 0.91747 0.98579 1.01063 0.86473 1.23070 1.02321 1.03012 0.90278 1.22345 0.97336 0.99312 1.01963 0.85919 1.19604 0.82079 0.85511 0.80064 1.90683 1.53502 1.48986 1.49112 1.48112 1.04995 1.27193 1.53123 1.21765 0.90602 0.93315 0.95742 1.21950 0.98333 0.98885 0.98044 1.22126 0.99693 0.95537 0.99860 1.20567 0.91828 0.89081 0.92489 0.91781 1.43946 1.61340 1.21479 1.04808 1.20800 0.94782 0.93072 0.89488 1.19260 1.11859 1.23554 0.83521 0.91226 1.24883 0.95513 1.01392 0.98013 1.70116 1.10807 1.36783 1.37731 0.86271 0.78118 0.78000 0.84280 1.21533 1.21594 1.20533 1.22431 0.99379 0.86491 0.94378 0.92577 0.92718 0.92437 0.91768 0.91410 0.88405 0.87993 0.91545 0.90165 0.91311 0.91811 0.92445 0.91514 0.95384 0.98392 0.93470 0.93824 0.89242 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.87 37.15 0.37 -0.75 16 2 C -0.09 -0.77 6.22 -26.73 -0.17 -0.93 16 3 C -0.12 -1.27 5.25 -90.62 -0.48 -1.74 16 4 H 0.12 1.48 7.60 -51.93 -0.39 1.09 16 5 C -0.15 -1.42 9.88 -26.73 -0.26 -1.69 16 6 C -0.19 -2.16 4.85 -91.77 -0.44 -2.61 16 7 H 0.12 1.16 6.56 -51.93 -0.34 0.81 16 8 C 0.54 8.68 7.48 -10.99 -0.08 8.60 16 9 O -0.54 -10.98 15.67 5.55 0.09 -10.90 16 10 N -0.60 -9.45 2.97 -172.74 -0.51 -9.96 16 11 C 0.11 1.31 6.35 -3.71 -0.02 1.28 16 12 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 13 C -0.13 -2.32 5.14 -26.69 -0.14 -2.46 16 14 C 0.17 3.52 2.74 -67.79 -0.19 3.33 16 15 H 0.06 1.41 7.83 -51.93 -0.41 1.01 16 16 N -0.59 -14.98 2.82 -173.33 -0.49 -15.47 16 17 C 0.16 4.02 8.02 59.84 0.48 4.50 16 18 C -0.25 -7.07 9.65 -15.06 -0.15 -7.22 16 19 H 0.07 1.93 7.79 -52.49 -0.41 1.52 16 20 C 0.00 -0.01 5.06 -17.43 -0.09 -0.10 16 21 N -0.91 -26.62 10.55 55.49 0.59 -26.04 16 22 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.10 1.84 5.79 -3.69 -0.02 1.82 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.75 5.51 -51.93 -0.29 0.46 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.03 0.74 7.48 -51.93 -0.39 0.35 16 41 H 0.00 -0.05 6.37 -51.93 -0.33 -0.38 16 42 H 0.05 1.27 7.03 -51.93 -0.36 0.90 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 1.95 7.00 -51.93 -0.36 1.58 16 45 H 0.06 1.19 6.51 -51.93 -0.34 0.85 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -31.75 350.18 -9.22 -40.97 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.79 Total: -1.31 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.35 Total: 0.15 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.42 Total: -51.46 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.75 -9.22 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027585153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.811 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds