Wall clock time and date at job start Tue Mar 31 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47055 * 2 1 4 4 H 1.09001 * 115.54925 * 29.32552 * 3 2 1 5 5 C 1.52998 * 117.51606 * 243.63215 * 3 2 1 6 6 C 1.53001 * 117.50026 * 175.00023 * 3 2 1 7 7 H 1.09001 * 117.49685 * 0.02562 * 6 3 2 8 8 C 1.50690 * 117.49805 * 215.00107 * 6 3 2 9 9 O 1.21285 * 120.00478 * 0.02562 * 8 6 3 10 10 N 1.34781 * 119.99949 * 179.97438 * 8 6 3 11 11 C 1.46919 * 120.62947 * 0.02562 * 10 8 6 12 12 C 1.53199 * 108.77459 * 233.60711 * 11 10 8 13 13 C 1.53040 * 109.31351 * 305.36668 * 12 11 10 14 14 C 1.53045 * 109.53869 * 61.36400 * 13 12 11 15 15 H 1.08995 * 109.49522 * 58.61839 * 14 13 12 16 16 N 1.46499 * 109.49503 * 178.68574 * 14 13 12 17 17 C 1.46496 * 120.00457 * 59.66201 * 16 14 13 18 18 C 1.36938 * 119.99250 * 239.93163 * 16 14 13 19 19 H 1.07996 * 120.00717 * 342.43114 * 18 16 14 20 20 C 1.38815 * 119.99729 * 162.43509 * 18 16 14 21 21 N 1.31625 * 119.99679 * 344.07507 * 20 18 16 22 22 Si 1.86791 * 120.00209 * 164.07193 * 20 18 16 23 23 H 1.48503 * 109.47167 * 90.00015 * 22 20 18 24 24 H 1.48500 * 109.47527 * 209.99617 * 22 20 18 25 25 H 1.48500 * 109.47329 * 330.00219 * 22 20 18 26 26 C 1.46937 * 120.60361 * 180.02562 * 10 8 6 27 27 H 1.09001 * 109.47104 * 60.00498 * 1 2 3 28 28 H 1.08999 * 109.46799 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47499 * 299.99922 * 1 2 3 30 30 H 1.08998 * 109.47499 * 240.00078 * 2 1 3 31 31 H 1.08998 * 109.47372 * 119.99951 * 2 1 3 32 32 H 1.08996 * 117.49986 * 145.03075 * 5 3 2 33 33 H 1.08997 * 117.50270 * 0.02562 * 5 3 2 34 34 H 1.08999 * 109.58587 * 113.82539 * 11 10 8 35 35 H 1.09001 * 109.58993 * 353.39239 * 11 10 8 36 36 H 1.08997 * 109.49521 * 185.41119 * 12 11 10 37 37 H 1.09006 * 109.51952 * 65.33361 * 12 11 10 38 38 H 1.09004 * 109.45887 * 301.34384 * 13 12 11 39 39 H 1.08994 * 109.44996 * 181.37850 * 13 12 11 40 40 H 1.09002 * 109.47041 * 265.10647 * 17 16 14 41 41 H 1.09001 * 109.47048 * 25.10022 * 17 16 14 42 42 H 1.08992 * 109.47332 * 145.10449 * 17 16 14 43 43 H 0.97003 * 119.99714 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.61416 * 6.61748 * 26 10 8 45 45 H 1.08998 * 109.55879 * 246.19684 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8437 1.9081 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1957 8 6 4.0227 2.8618 0.8918 9 8 3.2157 3.6161 1.3926 10 7 5.3423 3.0998 1.0280 11 6 6.3320 2.1950 0.4276 12 6 7.3135 1.7465 1.5149 13 6 7.9177 2.9793 2.1912 14 6 6.8057 3.7973 2.8519 15 1 6.2831 3.1783 3.5812 16 7 7.3886 4.9603 3.5256 17 6 8.1516 5.9462 2.7563 18 6 7.2247 5.1228 4.8754 19 1 6.4517 4.5765 5.3953 20 6 8.0523 5.9899 5.5755 21 7 9.1741 6.4121 5.0314 22 14 7.5740 6.5577 7.2895 23 1 8.1261 5.6150 8.2954 24 1 8.1219 7.9166 7.5318 25 1 6.0939 6.5930 7.4043 26 6 5.8178 4.2692 1.7799 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7210 2.9434 -1.5338 33 1 3.0090 1.1869 -2.0161 34 1 6.8738 2.7175 -0.3607 35 1 5.8257 1.3244 0.0108 36 1 8.1086 1.1522 1.0646 37 1 6.7862 1.1464 2.2566 38 1 8.4242 3.5913 1.4448 39 1 8.6348 2.6629 2.9486 40 1 9.2136 5.7068 2.8109 41 1 7.8275 5.9251 1.7158 42 1 7.9815 6.9403 3.1697 43 1 9.7526 7.0177 5.5208 44 1 4.9727 4.7669 2.2553 45 1 6.3173 4.9608 1.1014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027585153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:16 Heat of formation + Delta-G solvation = -13.519737 kcal Electronic energy + Delta-G solvation = -22692.425455 eV Core-core repulsion = 19517.316559 eV Total energy + Delta-G solvation = -3175.108896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43142 -39.34843 -37.81822 -36.79359 -33.98615 -32.87947 -32.85334 -30.56051 -28.10791 -27.03516 -25.53346 -24.74667 -24.08172 -23.03942 -21.47312 -20.75612 -19.77580 -18.82224 -18.29901 -17.22297 -16.86879 -16.30672 -15.81987 -15.49131 -15.43956 -15.21235 -15.11815 -14.91505 -14.47970 -13.98361 -13.89995 -13.71916 -13.35952 -13.32097 -12.95754 -12.90272 -12.82202 -12.52579 -12.30607 -12.21325 -12.10827 -11.95024 -11.90810 -11.81554 -11.68960 -11.42670 -11.21669 -10.87342 -10.77239 -10.64683 -9.71766 -8.83749 -7.87062 -5.30008 1.41681 1.44140 1.48180 1.53971 1.95046 2.48533 2.87015 3.25531 3.45458 3.59208 3.77365 3.85004 3.93543 4.07097 4.08165 4.19875 4.24378 4.30876 4.34469 4.50940 4.59536 4.61919 4.71192 4.75738 4.80872 4.85990 4.88803 4.96000 5.00735 5.04478 5.14566 5.18223 5.26374 5.27375 5.32752 5.42615 5.47133 5.50531 5.53031 5.60378 5.69775 6.26980 6.46868 7.10667 7.17823 7.83404 8.24083 9.16110 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.003864 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.921242 B = 7244.538633 C = 7831.902419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.127 4.127 4 H 0.085 0.915 5 C -0.128 4.128 6 C -0.192 4.192 7 H 0.156 0.844 8 C 0.530 3.470 9 O -0.599 6.599 10 N -0.602 5.602 11 C 0.106 3.894 12 C -0.123 4.123 13 C -0.123 4.123 14 C 0.168 3.832 15 H 0.042 0.958 16 N -0.611 5.611 17 C 0.181 3.819 18 C -0.267 4.267 19 H 0.063 0.937 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.112 3.888 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.007 0.993 41 H 0.029 0.971 42 H 0.016 0.984 43 H 0.249 0.751 44 H 0.052 0.948 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 -15.860 -16.354 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.146 4.146 4 H 0.103 0.897 5 C -0.165 4.165 6 C -0.213 4.213 7 H 0.173 0.827 8 C 0.320 3.680 9 O -0.481 6.481 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.162 4.162 13 C -0.163 4.163 14 C 0.060 3.940 15 H 0.061 0.939 16 N -0.334 5.334 17 C 0.036 3.964 18 C -0.397 4.397 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.203 1.203 26 C -0.013 4.013 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.158 0.842 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.716 -15.336 -16.024 24.215 hybrid contribution 0.210 1.180 1.628 2.021 sum -9.506 -14.157 -14.396 22.316 Atomic orbital electron populations 1.21750 0.95182 1.02260 1.01633 1.21150 0.96274 0.91910 1.03174 1.22501 0.90779 0.99581 1.01774 0.89718 1.23203 0.99877 1.03273 0.90155 1.22361 0.98220 0.97900 1.02798 0.82710 1.20535 0.81551 0.86304 0.79576 1.90660 1.54860 1.51169 1.51363 1.48211 1.05967 1.26641 1.52540 1.22106 0.89885 0.94125 0.95387 1.21914 0.99431 0.96696 0.98165 1.21945 0.97872 0.97165 0.99282 1.20700 0.92913 0.87910 0.92443 0.93946 1.44145 1.61682 1.23249 1.04344 1.20504 0.93621 0.91403 0.90824 1.19508 1.11553 1.23600 0.85061 0.91921 1.25604 0.95593 1.01696 1.01628 1.70254 1.11546 1.37295 1.39026 0.85298 0.77701 0.77382 0.80229 1.20837 1.21505 1.20315 1.21911 0.97367 0.87915 0.94089 0.92302 0.91269 0.93933 0.89285 0.91503 0.89823 0.84172 0.89856 0.86090 0.87634 0.92002 0.92262 0.93876 0.97459 0.95226 0.96485 0.94148 0.92950 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.87 71.98 0.71 -1.26 16 2 C -0.09 -1.16 6.22 30.59 0.19 -0.97 16 3 C -0.13 -2.46 5.25 -10.79 -0.06 -2.51 16 4 H 0.08 2.20 7.60 -2.39 -0.02 2.19 16 5 C -0.13 -1.99 9.88 30.60 0.30 -1.69 16 6 C -0.19 -3.83 4.85 -11.54 -0.06 -3.89 16 7 H 0.16 2.08 6.56 -2.39 -0.02 2.07 16 8 C 0.53 16.69 7.48 87.65 0.66 17.35 16 9 O -0.60 -25.10 15.67 -3.04 -0.05 -25.14 16 10 N -0.60 -18.11 2.97 -818.82 -2.43 -20.54 16 11 C 0.11 2.12 6.35 86.37 0.55 2.67 16 12 C -0.12 -2.80 6.08 30.67 0.19 -2.62 16 13 C -0.12 -4.20 5.14 30.62 0.16 -4.05 16 14 C 0.17 7.12 2.74 45.08 0.12 7.24 16 15 H 0.04 1.94 7.83 -2.39 -0.02 1.93 16 16 N -0.61 -31.87 2.82 -702.30 -1.98 -33.85 16 17 C 0.18 9.18 8.02 127.77 1.02 10.21 16 18 C -0.27 -15.48 9.65 84.03 0.81 -14.67 16 19 H 0.06 3.62 7.79 -2.91 -0.02 3.60 16 20 C -0.05 -2.91 5.06 84.86 0.43 -2.48 16 21 N -0.93 -56.23 10.55 21.65 0.23 -56.00 16 22 Si 0.97 46.92 29.58 68.60 2.03 48.95 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 26 C 0.11 4.34 5.79 86.37 0.50 4.84 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.77 7.88 -2.39 -0.02 0.75 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.14 1.17 8.03 -2.39 -0.02 1.15 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.12 1.52 5.51 -2.39 -0.01 1.50 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 2.00 7.71 -2.38 -0.02 1.98 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.01 0.39 7.48 -2.39 -0.02 0.37 16 41 H 0.03 1.28 6.37 -2.39 -0.02 1.26 16 42 H 0.02 0.93 7.03 -2.39 -0.02 0.91 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.05 2.40 7.00 -2.39 -0.02 2.39 16 45 H 0.07 2.46 6.51 -2.39 -0.02 2.44 16 Total: -1.00 -74.04 350.18 4.27 -69.77 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.95 Total: 8.67 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.53 Total: 8.15 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.19 Total: -110.40 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -74.04 4.27 -69.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027585153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.247 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds