Wall clock time and date at job start Tue Mar 31 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53001 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56156 * 29.30864 * 4 3 2 6 6 C 1.53069 * 117.49553 * 243.60419 * 4 3 2 7 7 C 1.52991 * 59.98528 * 252.51258 * 6 4 3 8 8 H 1.08999 * 117.50417 * 107.49845 * 7 6 4 9 9 C 1.50704 * 117.49971 * 252.49924 * 7 6 4 10 10 O 1.21283 * 119.99961 * 68.74455 * 9 7 6 11 11 N 1.34773 * 119.99865 * 248.74191 * 9 7 6 12 12 C 1.46500 * 120.00070 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47533 * 185.13874 * 12 11 9 14 14 H 1.09006 * 109.87222 * 303.57674 * 13 12 11 15 15 C 1.54334 * 109.88207 * 64.58807 * 13 12 11 16 16 C 1.55157 * 102.93858 * 141.61127 * 15 13 12 17 17 C 1.54903 * 101.58463 * 324.49961 * 16 15 13 18 18 N 1.47014 * 109.88640 * 182.39634 * 13 12 11 19 19 C 1.36943 * 125.64560 * 61.59776 * 18 13 12 20 20 H 1.07996 * 120.00201 * 14.75096 * 19 18 13 21 21 C 1.38812 * 119.99732 * 194.75573 * 19 18 13 22 22 N 1.31615 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99857 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46613 * 59.99991 * 23 21 19 25 25 H 1.48500 * 109.47180 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47161 * 300.00373 * 23 21 19 27 27 H 1.09005 * 109.47151 * 299.99468 * 1 2 3 28 28 H 1.08992 * 109.47585 * 59.99663 * 1 2 3 29 29 H 1.09002 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46770 * 240.00488 * 2 1 3 31 31 H 1.08994 * 109.47242 * 119.99641 * 2 1 3 32 32 H 1.08999 * 109.47092 * 60.00685 * 3 2 1 33 33 H 1.09002 * 109.47457 * 300.00470 * 3 2 1 34 34 H 1.09005 * 117.51862 * 145.03278 * 6 4 3 35 35 H 1.09005 * 117.49267 * 359.97438 * 6 4 3 36 36 H 0.97003 * 120.00067 * 359.97438 * 11 9 7 37 37 H 1.09004 * 109.47173 * 305.13915 * 12 11 9 38 38 H 1.09002 * 109.46779 * 65.13462 * 12 11 9 39 39 H 1.08999 * 110.71972 * 259.97930 * 15 13 12 40 40 H 1.08998 * 110.71429 * 23.24864 * 15 13 12 41 41 H 1.09003 * 110.99993 * 82.57489 * 16 15 13 42 42 H 1.08995 * 111.00091 * 206.38452 * 16 15 13 43 43 H 1.08997 * 110.36770 * 155.84831 * 17 16 15 44 44 H 1.08999 * 110.36926 * 278.06273 * 17 16 15 45 45 H 0.97000 * 120.00571 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5853 -0.4823 6 6 4.2771 2.0461 1.2154 7 6 4.2763 2.7946 -0.1189 8 1 3.6511 3.6840 -0.1968 9 6 5.5688 2.8390 -0.8926 10 8 6.0103 1.8270 -1.3944 11 7 6.2340 4.0034 -1.0270 12 6 7.4908 4.0466 -1.7787 13 6 8.1013 5.4454 -1.6718 14 1 7.3864 6.1895 -2.0233 15 6 8.4870 5.7392 -0.2066 16 6 9.8231 6.5152 -0.3480 17 6 10.4636 5.8117 -1.5705 18 7 9.3339 5.5154 -2.4701 19 6 9.4186 5.3343 -3.8248 20 1 8.5243 5.3574 -4.4297 21 6 10.6542 5.1211 -4.4205 22 7 11.7442 5.0933 -3.6834 23 14 10.7698 4.8734 -6.2685 24 1 10.2391 6.0740 -6.9629 25 1 12.1894 4.6672 -6.6524 26 1 9.9728 3.6829 -6.6592 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6765 1.9565 -0.8899 34 1 5.2125 1.5858 1.5338 35 1 3.6520 2.4433 2.0152 36 1 5.8807 4.8130 -0.6260 37 1 8.1856 3.3145 -1.3671 38 1 7.2961 3.8141 -2.8256 39 1 7.7302 6.3586 0.2746 40 1 8.6363 4.8117 0.3462 41 1 9.6422 7.5700 -0.5548 42 1 10.4413 6.3940 0.5414 43 1 11.1749 6.4761 -2.0609 44 1 10.9570 4.8899 -1.2622 45 1 12.6076 4.9439 -4.0996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028124030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:39 Heat of formation + Delta-G solvation = -12.714394 kcal Electronic energy + Delta-G solvation = -21848.616937 eV Core-core repulsion = 18673.542963 eV Total energy + Delta-G solvation = -3175.073974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.84206 -37.91986 -36.99445 -34.19714 -34.01740 -32.46887 -29.72999 -28.82677 -27.64193 -25.23116 -24.36739 -22.84801 -22.10560 -20.71512 -20.30635 -19.91245 -19.29879 -17.31064 -16.54909 -15.84270 -15.43953 -15.14558 -14.80508 -14.60401 -14.27539 -13.90844 -13.66781 -13.46132 -13.01962 -12.85641 -12.39202 -12.19824 -12.08766 -11.87725 -11.75092 -11.52645 -11.29847 -11.24165 -11.05516 -10.94334 -10.77114 -10.35227 -10.23477 -10.13617 -10.10918 -9.94692 -9.83484 -9.72530 -9.49534 -8.64080 -8.55424 -6.83839 -5.76611 -3.13361 2.72017 3.37849 3.43009 3.45731 3.47202 3.79614 4.43310 4.50944 4.64408 4.71674 4.87018 4.93538 5.07332 5.16149 5.30297 5.33999 5.41138 5.48882 5.50295 5.56101 5.57661 5.62474 5.64678 5.80505 5.81286 5.84887 5.99687 6.02877 6.07329 6.14709 6.23180 6.24965 6.46177 6.55344 6.63625 6.73139 6.83906 7.07353 7.51223 7.60976 7.78869 7.85242 8.25815 8.55303 9.17557 9.78126 10.45575 11.35408 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.003297 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.746767 B = 8489.865603 C = 9424.129160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.188 4.188 8 H 0.120 0.880 9 C 0.535 3.465 10 O -0.545 6.545 11 N -0.719 5.719 12 C 0.109 3.891 13 C 0.152 3.848 14 H 0.037 0.963 15 C -0.125 4.125 16 C -0.149 4.149 17 C 0.172 3.828 18 N -0.589 5.589 19 C -0.235 4.235 20 H 0.075 0.925 21 C -0.001 4.001 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.396 0.604 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.751 -2.891 11.570 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.209 4.209 8 H 0.138 0.862 9 C 0.320 3.680 10 O -0.422 6.422 11 N -0.369 5.369 12 C -0.016 4.016 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.163 4.163 16 C -0.188 4.188 17 C 0.048 3.952 18 N -0.313 5.313 19 C -0.363 4.363 20 H 0.093 0.907 21 C -0.198 4.198 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.209 1.209 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.185 -3.631 11.008 20.729 hybrid contribution 0.011 0.265 -0.834 0.876 sum -17.174 -3.366 10.174 20.243 Atomic orbital electron populations 1.21782 0.95953 1.01579 1.01723 1.21506 0.95550 0.96592 1.02394 1.21238 0.92063 0.97287 1.02090 1.22444 0.94485 0.95779 1.01168 0.86469 1.23088 1.03047 1.02317 0.90287 1.22333 0.98113 0.98561 1.01927 0.86176 1.19636 0.84596 0.83594 0.80166 1.90699 1.68670 1.34128 1.48735 1.46067 1.25238 1.10245 1.55384 1.22232 0.83003 1.00455 0.95911 1.21127 0.90736 0.92675 0.91110 0.94548 1.22598 0.97804 0.99769 0.96168 1.23008 0.96472 0.99232 1.00045 1.21445 0.89873 0.97057 0.86859 1.44474 1.01497 1.82229 1.03103 1.18937 0.93511 1.42904 0.80976 0.90721 1.24919 0.95761 1.00886 0.98257 1.69923 0.97602 1.54773 1.33873 0.86225 0.76733 0.78218 0.84754 1.21060 1.21539 1.20924 0.92849 0.92742 0.92796 0.91740 0.91830 0.91726 0.91433 0.88345 0.88019 0.77107 0.91689 0.91623 0.92411 0.91862 0.92307 0.92347 0.90991 0.95610 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.95 5.89 -26.73 -0.16 -1.11 16 3 C -0.09 -0.74 5.50 -26.73 -0.15 -0.88 16 4 C -0.12 -1.28 5.25 -90.59 -0.48 -1.76 16 5 H 0.12 1.50 7.60 -51.93 -0.39 1.11 16 6 C -0.15 -1.46 9.88 -26.70 -0.26 -1.73 16 7 C -0.19 -2.14 5.91 -91.78 -0.54 -2.69 16 8 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 9 C 0.53 8.59 7.61 -10.98 -0.08 8.51 16 10 O -0.54 -11.24 16.25 5.55 0.09 -11.15 16 11 N -0.72 -11.07 5.33 -60.29 -0.32 -11.39 16 12 C 0.11 2.16 5.07 -4.04 -0.02 2.14 16 13 C 0.15 3.03 3.22 -66.95 -0.22 2.81 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C -0.13 -2.10 6.10 -24.89 -0.15 -2.25 16 16 C -0.15 -2.74 7.08 -24.59 -0.17 -2.91 16 17 C 0.17 4.14 5.41 -2.53 -0.01 4.12 16 18 N -0.59 -14.74 3.13 -162.58 -0.51 -15.24 16 19 C -0.23 -6.49 9.76 -15.06 -0.15 -6.64 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 22 N -0.92 -26.83 10.58 55.49 0.59 -26.25 16 23 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 36 H 0.40 4.80 8.34 -40.82 -0.34 4.46 16 37 H 0.06 1.45 8.08 -51.93 -0.42 1.03 16 38 H 0.07 1.48 7.92 -51.93 -0.41 1.06 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.06 7.81 -51.93 -0.41 0.66 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 44 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -31.87 362.72 -10.02 -41.89 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.19 Total: 2.58 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.12 Total: -3.15 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.24 Total: -52.88 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.87 -10.02 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028124030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.179 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds