Wall clock time and date at job start Tue Mar 31 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53001 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56156 * 29.30864 * 4 3 2 6 6 C 1.53069 * 117.49553 * 243.60419 * 4 3 2 7 7 C 1.52991 * 59.98528 * 252.51258 * 6 4 3 8 8 H 1.08999 * 117.50417 * 107.49845 * 7 6 4 9 9 C 1.50704 * 117.49971 * 252.49924 * 7 6 4 10 10 O 1.21283 * 119.99961 * 68.74455 * 9 7 6 11 11 N 1.34773 * 119.99865 * 248.74191 * 9 7 6 12 12 C 1.46500 * 120.00070 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47533 * 185.13874 * 12 11 9 14 14 H 1.09006 * 109.87222 * 303.57674 * 13 12 11 15 15 C 1.54334 * 109.88207 * 64.58807 * 13 12 11 16 16 C 1.55157 * 102.93858 * 141.61127 * 15 13 12 17 17 C 1.54903 * 101.58463 * 324.49961 * 16 15 13 18 18 N 1.47014 * 109.88640 * 182.39634 * 13 12 11 19 19 C 1.36943 * 125.64560 * 61.59776 * 18 13 12 20 20 H 1.07996 * 120.00201 * 14.75096 * 19 18 13 21 21 C 1.38812 * 119.99732 * 194.75573 * 19 18 13 22 22 N 1.31615 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99857 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46613 * 59.99991 * 23 21 19 25 25 H 1.48500 * 109.47180 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47161 * 300.00373 * 23 21 19 27 27 H 1.09005 * 109.47151 * 299.99468 * 1 2 3 28 28 H 1.08992 * 109.47585 * 59.99663 * 1 2 3 29 29 H 1.09002 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46770 * 240.00488 * 2 1 3 31 31 H 1.08994 * 109.47242 * 119.99641 * 2 1 3 32 32 H 1.08999 * 109.47092 * 60.00685 * 3 2 1 33 33 H 1.09002 * 109.47457 * 300.00470 * 3 2 1 34 34 H 1.09005 * 117.51862 * 145.03278 * 6 4 3 35 35 H 1.09005 * 117.49267 * 359.97438 * 6 4 3 36 36 H 0.97003 * 120.00067 * 359.97438 * 11 9 7 37 37 H 1.09004 * 109.47173 * 305.13915 * 12 11 9 38 38 H 1.09002 * 109.46779 * 65.13462 * 12 11 9 39 39 H 1.08999 * 110.71972 * 259.97930 * 15 13 12 40 40 H 1.08998 * 110.71429 * 23.24864 * 15 13 12 41 41 H 1.09003 * 110.99993 * 82.57489 * 16 15 13 42 42 H 1.08995 * 111.00091 * 206.38452 * 16 15 13 43 43 H 1.08997 * 110.36770 * 155.84831 * 17 16 15 44 44 H 1.08999 * 110.36926 * 278.06273 * 17 16 15 45 45 H 0.97000 * 120.00571 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5853 -0.4823 6 6 4.2771 2.0461 1.2154 7 6 4.2763 2.7946 -0.1189 8 1 3.6511 3.6840 -0.1968 9 6 5.5688 2.8390 -0.8926 10 8 6.0103 1.8270 -1.3944 11 7 6.2340 4.0034 -1.0270 12 6 7.4908 4.0466 -1.7787 13 6 8.1013 5.4454 -1.6718 14 1 7.3864 6.1895 -2.0233 15 6 8.4870 5.7392 -0.2066 16 6 9.8231 6.5152 -0.3480 17 6 10.4636 5.8117 -1.5705 18 7 9.3339 5.5154 -2.4701 19 6 9.4186 5.3343 -3.8248 20 1 8.5243 5.3574 -4.4297 21 6 10.6542 5.1211 -4.4205 22 7 11.7442 5.0933 -3.6834 23 14 10.7698 4.8734 -6.2685 24 1 10.2391 6.0740 -6.9629 25 1 12.1894 4.6672 -6.6524 26 1 9.9728 3.6829 -6.6592 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6765 1.9565 -0.8899 34 1 5.2125 1.5858 1.5338 35 1 3.6520 2.4433 2.0152 36 1 5.8807 4.8130 -0.6260 37 1 8.1856 3.3145 -1.3671 38 1 7.2961 3.8141 -2.8256 39 1 7.7302 6.3586 0.2746 40 1 8.6363 4.8117 0.3462 41 1 9.6422 7.5700 -0.5548 42 1 10.4413 6.3940 0.5414 43 1 11.1749 6.4761 -2.0609 44 1 10.9570 4.8899 -1.2622 45 1 12.6076 4.9439 -4.0996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028124030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:38 Heat of formation + Delta-G solvation = -32.325946 kcal Electronic energy + Delta-G solvation = -21849.467357 eV Core-core repulsion = 18673.542963 eV Total energy + Delta-G solvation = -3175.924395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09636 -39.45577 -38.09621 -35.74225 -34.71411 -34.40959 -31.48470 -30.52168 -28.36938 -26.85265 -26.09737 -24.11597 -22.78132 -22.04649 -21.48720 -21.32193 -20.78419 -18.88302 -18.11650 -17.36822 -16.69515 -16.34404 -16.20591 -15.89666 -15.68447 -15.44378 -14.92613 -14.57261 -14.16149 -14.00081 -13.71874 -13.66237 -13.44218 -13.11396 -12.99671 -12.89741 -12.88210 -12.66975 -12.19306 -12.07810 -11.93759 -11.87894 -11.74330 -11.65998 -11.50490 -11.41509 -11.17370 -10.99782 -10.76554 -10.69137 -10.08329 -8.88196 -7.90813 -5.28620 1.42055 1.45765 1.50666 1.51356 2.13669 2.48038 2.88202 3.28665 3.58181 3.74788 3.79456 3.89890 3.94984 3.97563 4.19575 4.23091 4.26781 4.31872 4.40907 4.43845 4.52982 4.66505 4.71178 4.85374 4.90517 4.94546 4.96420 4.98098 5.03175 5.10286 5.13185 5.20270 5.23184 5.36625 5.39088 5.42858 5.44515 5.53467 5.56749 5.64648 5.76164 6.20964 6.61371 7.06783 7.29899 7.74010 8.39876 9.20006 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.003297 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.746767 B = 8489.865603 C = 9424.129160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.082 4.082 4 C -0.126 4.126 5 H 0.085 0.915 6 C -0.131 4.131 7 C -0.189 4.189 8 H 0.156 0.844 9 C 0.528 3.472 10 O -0.600 6.600 11 N -0.703 5.703 12 C 0.129 3.871 13 C 0.148 3.852 14 H 0.053 0.947 15 C -0.111 4.111 16 C -0.133 4.133 17 C 0.173 3.827 18 N -0.611 5.611 19 C -0.242 4.242 20 H 0.076 0.924 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.972 3.028 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.417 0.583 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.036 0.964 44 H -0.010 1.010 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.750 -1.408 13.595 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.145 4.145 5 H 0.103 0.897 6 C -0.168 4.168 7 C -0.210 4.210 8 H 0.173 0.827 9 C 0.316 3.684 10 O -0.481 6.481 11 N -0.354 5.354 12 C 0.003 3.997 13 C 0.041 3.959 14 H 0.071 0.929 15 C -0.149 4.149 16 C -0.172 4.172 17 C 0.048 3.952 18 N -0.336 5.336 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.254 4.254 22 N -0.593 5.593 23 Si 0.800 3.200 24 H -0.198 1.198 25 H -0.218 1.218 26 H -0.210 1.210 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.157 0.843 36 H 0.255 0.745 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.008 0.992 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.241 -2.109 13.070 24.186 hybrid contribution 0.914 -0.247 -1.452 1.733 sum -19.327 -2.356 11.618 22.673 Atomic orbital electron populations 1.21762 0.94825 1.01971 1.02236 1.21511 0.96506 0.96436 1.01787 1.21222 0.89883 0.97609 1.03157 1.22460 0.96063 0.94261 1.01754 0.89674 1.23214 1.02681 1.00666 0.90264 1.22339 0.95786 1.00379 1.02491 0.82674 1.20552 0.85758 0.82557 0.79497 1.90681 1.70356 1.36067 1.51025 1.45790 1.23597 1.11380 1.54657 1.21662 0.84362 0.99579 0.94144 1.21347 0.89166 0.92532 0.92859 0.92895 1.22588 0.98070 1.00397 0.93829 1.22874 0.97050 0.99357 0.97888 1.21268 0.89670 0.95330 0.88929 1.44753 1.03577 1.82327 1.02933 1.19265 0.93469 1.41654 0.82782 0.90639 1.25707 0.95665 1.01634 1.02381 1.70130 0.97685 1.56317 1.35203 0.85252 0.76317 0.78273 0.80117 1.19763 1.21821 1.20954 0.91766 0.92749 0.92560 0.93267 0.91682 0.89429 0.91436 0.89866 0.84325 0.74549 0.95016 0.95231 0.87448 0.91908 0.90937 0.89887 0.94537 0.99210 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.75 5.89 30.60 0.18 -1.57 16 3 C -0.08 -1.12 5.50 30.60 0.17 -0.96 16 4 C -0.13 -2.50 5.25 -10.77 -0.06 -2.55 16 5 H 0.08 2.25 7.60 -2.39 -0.02 2.24 16 6 C -0.13 -2.16 9.88 30.61 0.30 -1.85 16 7 C -0.19 -3.81 5.91 -11.54 -0.07 -3.88 16 8 H 0.16 2.07 8.14 -2.39 -0.02 2.05 16 9 C 0.53 16.66 7.61 87.66 0.67 17.33 16 10 O -0.60 -25.70 16.25 -3.04 -0.05 -25.75 16 11 N -0.70 -20.64 5.33 -463.06 -2.47 -23.10 16 12 C 0.13 5.18 5.07 86.38 0.44 5.62 16 13 C 0.15 5.74 3.22 45.34 0.15 5.89 16 14 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 15 C -0.11 -3.37 6.10 31.79 0.19 -3.17 16 16 C -0.13 -4.60 7.08 31.98 0.23 -4.38 16 17 C 0.17 8.52 5.41 86.85 0.47 8.99 16 18 N -0.61 -31.18 3.13 -668.28 -2.09 -33.27 16 19 C -0.24 -13.76 9.76 84.03 0.82 -12.94 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 21 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16 22 N -0.95 -57.87 10.58 21.65 0.23 -57.65 16 23 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.84 7.88 -2.39 -0.02 0.82 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.14 1.32 8.03 -2.38 -0.02 1.30 16 36 H 0.42 8.64 8.34 -92.71 -0.77 7.87 16 37 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 38 H 0.03 1.38 7.92 -2.39 -0.02 1.36 16 39 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 1.94 7.81 -2.39 -0.02 1.92 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.04 2.02 6.94 -2.39 -0.02 2.00 16 44 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -75.22 362.72 2.49 -72.73 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.17 Total: 15.42 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.67 Total: 2.54 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.33 Total: -114.02 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -75.22 2.49 -72.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028124030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.401 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds