Wall clock time and date at job start Tue Mar 31 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 C 1.53004 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55337 * 29.31546 * 4 3 2 6 6 C 1.52997 * 117.50489 * 243.62700 * 4 3 2 7 7 C 1.52994 * 117.50032 * 175.00197 * 4 3 2 8 8 H 1.08993 * 117.51870 * 0.02562 * 7 4 3 9 9 C 1.50703 * 117.49792 * 214.98438 * 7 4 3 10 10 O 1.21288 * 120.00052 * 359.97438 * 9 7 4 11 11 N 1.34778 * 120.00069 * 179.97438 * 9 7 4 12 12 C 1.46500 * 119.99852 * 179.71986 * 11 9 7 13 13 C 1.53003 * 109.47142 * 180.27443 * 12 11 9 14 14 H 1.09009 * 110.88437 * 51.11914 * 13 12 11 15 15 C 1.55154 * 111.00705 * 175.00185 * 13 12 11 16 16 C 1.54323 * 102.94249 * 153.57734 * 15 13 12 17 17 N 1.47017 * 107.27122 * 337.80844 * 16 15 13 18 18 C 1.36933 * 125.64987 * 178.96220 * 17 16 15 19 19 H 1.08005 * 120.00380 * 174.79429 * 18 17 16 20 20 C 1.38814 * 120.00107 * 354.79643 * 18 17 16 21 21 N 1.31625 * 119.99934 * 7.05547 * 20 18 17 22 22 Si 1.86800 * 120.00483 * 187.05554 * 20 18 17 23 23 H 1.48501 * 109.47043 * 94.98525 * 22 20 18 24 24 H 1.48504 * 109.47170 * 214.98970 * 22 20 18 25 25 H 1.48504 * 109.46846 * 334.98843 * 22 20 18 26 26 C 1.47428 * 108.70448 * 358.93883 * 17 16 15 27 27 H 1.09002 * 109.47210 * 299.99562 * 1 2 3 28 28 H 1.09000 * 109.47637 * 59.99901 * 1 2 3 29 29 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47210 * 240.00438 * 2 1 3 31 31 H 1.08990 * 109.47519 * 120.00227 * 2 1 3 32 32 H 1.08999 * 109.47361 * 60.00402 * 3 2 1 33 33 H 1.09003 * 109.47478 * 300.00060 * 3 2 1 34 34 H 1.08995 * 117.50065 * 145.01756 * 6 4 3 35 35 H 1.09005 * 117.49461 * 359.97438 * 6 4 3 36 36 H 0.96994 * 119.99809 * 0.02562 * 11 9 7 37 37 H 1.08999 * 109.47314 * 300.27310 * 12 11 9 38 38 H 1.09000 * 109.46864 * 60.28013 * 12 11 9 39 39 H 1.08999 * 110.71818 * 271.94062 * 15 13 12 40 40 H 1.08994 * 110.71821 * 35.03588 * 15 13 12 41 41 H 1.08997 * 109.88251 * 97.22407 * 16 15 13 42 42 H 1.08999 * 109.88340 * 218.38781 * 16 15 13 43 43 H 0.96996 * 120.00530 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36930 * 265.29099 * 26 17 16 45 45 H 1.09003 * 110.36487 * 142.96906 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4427 0.0006 5 1 4.0404 0.5852 -0.4805 6 6 4.2760 2.0457 1.2166 7 6 4.2763 2.7946 -0.1175 8 1 3.6514 3.6842 -0.1953 9 6 5.5694 2.8389 -0.8902 10 8 6.0124 1.8263 -1.3896 11 7 6.2336 4.0037 -1.0263 12 6 7.4938 4.0455 -1.7722 13 6 8.0405 5.4745 -1.7702 14 1 8.0768 5.8753 -0.7571 15 6 9.4371 5.5367 -2.4432 16 6 9.5077 6.9894 -2.9594 17 7 8.1259 7.4750 -3.0867 18 6 7.7548 8.7277 -3.4965 19 1 6.7101 8.9624 -3.6379 20 6 8.7214 9.6963 -3.7302 21 7 9.9973 9.3750 -3.6937 22 14 8.2114 11.4556 -4.0967 23 1 8.2283 12.2477 -2.8407 24 1 9.1593 12.0528 -5.0715 25 1 6.8412 11.4647 -4.6693 26 6 7.2059 6.3896 -2.7006 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.2109 1.5851 1.5355 35 1 3.6504 2.4428 2.0161 36 1 5.8796 4.8134 -0.6265 37 1 8.2169 3.3793 -1.3017 38 1 7.3189 3.7250 -2.7992 39 1 10.2252 5.3477 -1.7143 40 1 9.4992 4.8278 -3.2688 41 1 10.0544 7.6091 -2.2487 42 1 10.0003 7.0139 -3.9314 43 1 10.6727 10.0516 -3.8574 44 1 6.8791 5.8377 -3.5819 45 1 6.3468 6.7933 -2.1646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028789076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:43 Heat of formation + Delta-G solvation = -13.351265 kcal Electronic energy + Delta-G solvation = -21444.712726 eV Core-core repulsion = 18269.611135 eV Total energy + Delta-G solvation = -3175.101591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.05180 -37.98194 -37.12349 -34.61509 -34.11290 -32.48264 -29.88712 -28.47987 -27.69562 -25.77342 -24.34108 -22.85116 -22.17733 -20.82917 -20.39240 -19.98092 -19.45890 -17.35514 -16.72305 -16.09300 -15.54347 -15.31641 -14.88859 -14.69674 -14.53475 -13.97467 -13.65619 -13.52936 -13.09954 -12.95604 -12.48854 -12.34337 -12.29363 -12.02582 -11.76581 -11.59372 -11.38151 -11.32498 -11.12000 -10.90623 -10.81479 -10.46765 -10.39067 -10.23667 -10.14611 -10.01204 -9.88211 -9.69091 -9.63492 -8.93614 -8.58469 -6.83686 -5.73303 -3.05682 2.50426 3.17648 3.39123 3.44229 3.46483 3.65389 4.34631 4.48678 4.53590 4.60286 4.78913 4.86151 4.96057 5.02247 5.13726 5.23131 5.23637 5.42829 5.43712 5.46887 5.51461 5.53474 5.56956 5.68078 5.73920 5.75624 5.89925 5.92678 5.96611 6.05429 6.06981 6.13570 6.34719 6.46376 6.50622 6.53734 6.69403 6.91141 7.55003 7.58952 7.63293 7.81853 8.25254 8.28535 9.21007 9.81688 10.48352 11.38872 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.002724 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.614250 B =10278.176092 C =11003.018782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.118 4.118 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.190 4.190 8 H 0.123 0.877 9 C 0.540 3.460 10 O -0.548 6.548 11 N -0.720 5.720 12 C 0.132 3.868 13 C -0.117 4.117 14 H 0.079 0.921 15 C -0.135 4.135 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.142 3.858 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.403 0.597 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.252 0.748 44 H 0.019 0.981 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.478 -15.601 10.275 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.137 4.137 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.211 4.211 8 H 0.141 0.859 9 C 0.326 3.674 10 O -0.426 6.426 11 N -0.371 5.371 12 C 0.009 3.991 13 C -0.137 4.137 14 H 0.098 0.902 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.016 3.984 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.029 -16.104 9.821 22.925 hybrid contribution -0.268 1.546 -0.070 1.570 sum -13.296 -14.558 9.751 21.996 Atomic orbital electron populations 1.21784 0.95890 1.01611 1.01807 1.21500 0.95633 0.96522 1.02329 1.21253 0.91946 0.97354 1.02262 1.22439 0.94635 0.95531 1.01062 0.86467 1.23091 1.03073 1.02171 0.90329 1.22320 0.97936 0.98888 1.02003 0.85892 1.19640 0.84627 0.83264 0.79863 1.90681 1.68794 1.34136 1.48953 1.46013 1.24752 1.10742 1.55549 1.21409 0.84176 0.97228 0.96328 1.22609 0.97598 0.93100 1.00369 0.90226 1.22852 0.94659 1.00632 0.99238 1.21154 0.86631 0.87594 0.99455 1.44491 1.00970 1.09535 1.78307 1.19057 0.92608 0.85641 1.38492 0.90470 1.24835 0.95346 0.98256 1.02009 1.69981 0.98856 1.32246 1.55641 0.86117 0.77422 0.84800 0.77554 1.21620 1.21761 1.20642 1.21585 0.92871 0.89503 0.94452 0.92798 0.92700 0.92778 0.91776 0.91850 0.91636 0.91318 0.88359 0.87875 0.76318 0.91759 0.91373 0.92004 0.92212 0.93398 0.94085 0.93744 0.96371 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.84 5.89 -26.73 -0.16 -1.00 16 3 C -0.09 -0.67 5.50 -26.73 -0.15 -0.82 16 4 C -0.12 -1.10 5.25 -90.62 -0.48 -1.57 16 5 H 0.12 1.30 7.60 -51.93 -0.39 0.90 16 6 C -0.15 -1.26 9.88 -26.73 -0.26 -1.53 16 7 C -0.19 -1.91 5.91 -91.78 -0.54 -2.45 16 8 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 9 C 0.54 7.37 7.61 -10.98 -0.08 7.28 16 10 O -0.55 -9.49 16.26 5.55 0.09 -9.40 16 11 N -0.72 -9.32 5.50 -60.29 -0.33 -9.66 16 12 C 0.13 1.94 5.13 -4.04 -0.02 1.92 16 13 C -0.12 -1.95 3.05 -88.47 -0.27 -2.22 16 14 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 15 C -0.13 -2.47 6.42 -24.90 -0.16 -2.63 16 16 C 0.18 4.27 5.38 -3.07 -0.02 4.26 16 17 N -0.61 -15.47 3.39 -170.07 -0.58 -16.04 16 18 C -0.23 -6.41 10.27 -15.06 -0.15 -6.57 16 19 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 20 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -27.11 10.36 55.49 0.57 -26.53 16 22 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.14 2.87 6.65 -2.53 -0.02 2.85 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 7.87 -51.93 -0.41 0.02 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.67 8.03 -51.93 -0.42 0.26 16 36 H 0.40 4.44 8.47 -40.82 -0.35 4.09 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 41 H 0.05 1.28 7.30 -51.93 -0.38 0.90 16 42 H 0.04 1.10 7.61 -51.93 -0.40 0.71 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -32.14 363.37 -10.03 -42.17 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.20 Total: 0.30 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.04 Total: -3.36 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.33 Total: -52.23 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.14 -10.03 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028789076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.819 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds