Wall clock time and date at job start Tue Mar 31 2020 01:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 C 1.53004 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55337 * 29.31546 * 4 3 2 6 6 C 1.52997 * 117.50489 * 243.62700 * 4 3 2 7 7 C 1.52994 * 117.50032 * 175.00197 * 4 3 2 8 8 H 1.08993 * 117.51870 * 0.02562 * 7 4 3 9 9 C 1.50703 * 117.49792 * 214.98438 * 7 4 3 10 10 O 1.21288 * 120.00052 * 359.97438 * 9 7 4 11 11 N 1.34778 * 120.00069 * 179.97438 * 9 7 4 12 12 C 1.46500 * 119.99852 * 179.71986 * 11 9 7 13 13 C 1.53003 * 109.47142 * 180.27443 * 12 11 9 14 14 H 1.09009 * 110.88437 * 51.11914 * 13 12 11 15 15 C 1.55154 * 111.00705 * 175.00185 * 13 12 11 16 16 C 1.54323 * 102.94249 * 153.57734 * 15 13 12 17 17 N 1.47017 * 107.27122 * 337.80844 * 16 15 13 18 18 C 1.36933 * 125.64987 * 178.96220 * 17 16 15 19 19 H 1.08005 * 120.00380 * 174.79429 * 18 17 16 20 20 C 1.38814 * 120.00107 * 354.79643 * 18 17 16 21 21 N 1.31625 * 119.99934 * 7.05547 * 20 18 17 22 22 Si 1.86800 * 120.00483 * 187.05554 * 20 18 17 23 23 H 1.48501 * 109.47043 * 94.98525 * 22 20 18 24 24 H 1.48504 * 109.47170 * 214.98970 * 22 20 18 25 25 H 1.48504 * 109.46846 * 334.98843 * 22 20 18 26 26 C 1.47428 * 108.70448 * 358.93883 * 17 16 15 27 27 H 1.09002 * 109.47210 * 299.99562 * 1 2 3 28 28 H 1.09000 * 109.47637 * 59.99901 * 1 2 3 29 29 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47210 * 240.00438 * 2 1 3 31 31 H 1.08990 * 109.47519 * 120.00227 * 2 1 3 32 32 H 1.08999 * 109.47361 * 60.00402 * 3 2 1 33 33 H 1.09003 * 109.47478 * 300.00060 * 3 2 1 34 34 H 1.08995 * 117.50065 * 145.01756 * 6 4 3 35 35 H 1.09005 * 117.49461 * 359.97438 * 6 4 3 36 36 H 0.96994 * 119.99809 * 0.02562 * 11 9 7 37 37 H 1.08999 * 109.47314 * 300.27310 * 12 11 9 38 38 H 1.09000 * 109.46864 * 60.28013 * 12 11 9 39 39 H 1.08999 * 110.71818 * 271.94062 * 15 13 12 40 40 H 1.08994 * 110.71821 * 35.03588 * 15 13 12 41 41 H 1.08997 * 109.88251 * 97.22407 * 16 15 13 42 42 H 1.08999 * 109.88340 * 218.38781 * 16 15 13 43 43 H 0.96996 * 120.00530 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36930 * 265.29099 * 26 17 16 45 45 H 1.09003 * 110.36487 * 142.96906 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4427 0.0006 5 1 4.0404 0.5852 -0.4805 6 6 4.2760 2.0457 1.2166 7 6 4.2763 2.7946 -0.1175 8 1 3.6514 3.6842 -0.1953 9 6 5.5694 2.8389 -0.8902 10 8 6.0124 1.8263 -1.3896 11 7 6.2336 4.0037 -1.0263 12 6 7.4938 4.0455 -1.7722 13 6 8.0405 5.4745 -1.7702 14 1 8.0768 5.8753 -0.7571 15 6 9.4371 5.5367 -2.4432 16 6 9.5077 6.9894 -2.9594 17 7 8.1259 7.4750 -3.0867 18 6 7.7548 8.7277 -3.4965 19 1 6.7101 8.9624 -3.6379 20 6 8.7214 9.6963 -3.7302 21 7 9.9973 9.3750 -3.6937 22 14 8.2114 11.4556 -4.0967 23 1 8.2283 12.2477 -2.8407 24 1 9.1593 12.0528 -5.0715 25 1 6.8412 11.4647 -4.6693 26 6 7.2059 6.3896 -2.7006 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.2109 1.5851 1.5355 35 1 3.6504 2.4428 2.0161 36 1 5.8796 4.8134 -0.6265 37 1 8.2169 3.3793 -1.3017 38 1 7.3189 3.7250 -2.7992 39 1 10.2252 5.3477 -1.7143 40 1 9.4992 4.8278 -3.2688 41 1 10.0544 7.6091 -2.2487 42 1 10.0003 7.0139 -3.9314 43 1 10.6727 10.0516 -3.8574 44 1 6.8791 5.8377 -3.5819 45 1 6.3468 6.7933 -2.1646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028789076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:42 Heat of formation + Delta-G solvation = -32.536635 kcal Electronic energy + Delta-G solvation = -21445.544666 eV Core-core repulsion = 18269.611135 eV Total energy + Delta-G solvation = -3175.933531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08286 -39.42637 -38.11743 -36.01059 -34.71593 -34.28924 -31.67543 -30.04157 -28.41244 -27.36869 -25.84048 -24.02555 -22.77950 -22.04232 -21.53198 -21.40830 -20.67578 -18.88859 -18.15372 -17.34287 -16.72505 -16.51642 -16.06932 -15.99804 -15.64699 -15.39116 -14.94048 -14.57514 -14.16622 -13.98722 -13.85207 -13.68977 -13.47122 -13.11621 -13.02319 -12.90345 -12.77393 -12.65167 -12.17896 -12.01505 -11.95379 -11.88426 -11.86609 -11.65656 -11.56374 -11.48034 -11.16034 -10.98818 -10.72247 -10.69203 -10.07822 -8.90338 -7.86775 -5.21342 1.45845 1.47622 1.50487 1.56618 2.16401 2.49193 2.88796 3.31120 3.60488 3.61600 3.77660 3.82689 3.89535 4.01484 4.03628 4.20744 4.25120 4.32266 4.40531 4.44072 4.60638 4.66815 4.69401 4.79802 4.87166 4.90117 4.91149 4.96957 5.02213 5.05167 5.06645 5.10045 5.23113 5.34106 5.38656 5.42883 5.45816 5.48486 5.54370 5.66299 5.76942 6.19496 6.57038 7.09504 7.24921 7.77303 8.42284 9.24342 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.002724 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.614250 B =10278.176092 C =11003.018782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.122 4.122 5 H 0.093 0.907 6 C -0.133 4.133 7 C -0.197 4.197 8 H 0.146 0.854 9 C 0.536 3.464 10 O -0.590 6.590 11 N -0.713 5.713 12 C 0.144 3.856 13 C -0.094 4.094 14 H 0.091 0.909 15 C -0.123 4.123 16 C 0.182 3.818 17 N -0.629 5.629 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.979 3.021 23 H -0.285 1.285 24 H -0.297 1.297 25 H -0.267 1.267 26 C 0.138 3.862 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.414 0.586 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.015 0.985 42 H 0.001 0.999 43 H 0.247 0.753 44 H 0.016 0.984 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.505 -15.795 11.906 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.122 4.122 4 C -0.141 4.141 5 H 0.111 0.889 6 C -0.170 4.170 7 C -0.217 4.217 8 H 0.164 0.836 9 C 0.324 3.676 10 O -0.471 6.471 11 N -0.364 5.364 12 C 0.020 3.980 13 C -0.113 4.113 14 H 0.109 0.891 15 C -0.162 4.162 16 C 0.057 3.943 17 N -0.356 5.356 18 C -0.372 4.372 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.807 3.193 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.192 1.192 26 C 0.013 3.987 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.251 0.749 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.034 0.966 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.097 -16.302 11.473 25.006 hybrid contribution 0.355 1.557 -0.609 1.709 sum -14.742 -14.746 10.864 23.512 Atomic orbital electron populations 1.21773 0.95098 1.01976 1.02104 1.21497 0.96298 0.96286 1.01971 1.21235 0.90371 0.97691 1.02913 1.22436 0.95774 0.94289 1.01603 0.88881 1.23195 1.02881 1.00741 0.90212 1.22355 0.96419 1.00194 1.02767 0.83614 1.20259 0.85445 0.82510 0.79356 1.90665 1.70103 1.35567 1.50796 1.45926 1.24087 1.11312 1.55086 1.21143 0.85186 0.95579 0.96125 1.22401 0.95558 0.93556 0.99799 0.89069 1.22721 0.96685 0.96582 1.00230 1.20927 0.85855 0.90751 0.96770 1.44827 1.02401 1.10080 1.78280 1.19470 0.92956 0.86941 1.37847 0.89891 1.25706 0.95439 1.02306 1.02655 1.70204 0.99781 1.33034 1.56972 0.85053 0.77392 0.79697 0.77159 1.21200 1.22341 1.19175 1.21762 0.93047 0.88753 0.95143 0.92032 0.92843 0.92448 0.92862 0.91585 0.89962 0.91586 0.89228 0.85093 0.74936 0.91030 0.92599 0.89591 0.91197 0.96636 0.98047 0.94402 0.96627 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.52 5.89 30.59 0.18 -1.34 16 3 C -0.08 -1.07 5.50 30.60 0.17 -0.90 16 4 C -0.12 -2.08 5.25 -10.80 -0.06 -2.14 16 5 H 0.09 2.06 7.60 -2.39 -0.02 2.04 16 6 C -0.13 -1.90 9.88 30.59 0.30 -1.59 16 7 C -0.20 -3.49 5.91 -11.54 -0.07 -3.56 16 8 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 9 C 0.54 13.82 7.61 87.66 0.67 14.49 16 10 O -0.59 -20.20 16.26 -3.05 -0.05 -20.25 16 11 N -0.71 -16.91 5.50 -463.04 -2.55 -19.46 16 12 C 0.14 3.95 5.13 86.38 0.44 4.40 16 13 C -0.09 -2.93 3.05 -9.40 -0.03 -2.96 16 14 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 15 C -0.12 -4.40 6.42 31.78 0.20 -4.19 16 16 C 0.18 9.03 5.38 86.73 0.47 9.49 16 17 N -0.63 -32.28 3.39 -691.99 -2.35 -34.63 16 18 C -0.24 -13.64 10.27 84.03 0.86 -12.78 16 19 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 20 C -0.07 -3.90 5.48 84.86 0.46 -3.43 16 21 N -0.95 -57.74 10.36 21.65 0.22 -57.52 16 22 Si 0.98 45.74 29.56 68.60 2.03 47.77 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 C 0.14 5.39 6.65 86.85 0.58 5.97 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.78 7.87 -2.39 -0.02 0.76 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.13 1.17 8.03 -2.38 -0.02 1.15 16 36 H 0.41 7.93 8.47 -92.71 -0.79 7.15 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.71 7.96 -2.39 -0.02 1.69 16 39 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 41 H 0.02 0.85 7.30 -2.39 -0.02 0.84 16 42 H 0.00 0.07 7.61 -2.39 -0.02 0.05 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.02 0.64 7.91 -2.39 -0.02 0.62 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.37 363.37 2.36 -69.01 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.16 Total: 14.47 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.90 Total: 0.60 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.67 Total: -111.60 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -71.37 2.36 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028789076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.474 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds