Wall clock time and date at job start Tue Mar 31 2020 02:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.09004 * 110.01558 * 55.37006 * 3 2 1 5 5 C 1.54263 * 110.03272 * 293.97783 * 3 2 1 6 6 C 1.54890 * 104.19841 * 217.10619 * 5 3 2 7 7 C 1.54885 * 102.74668 * 37.93947 * 6 5 3 8 8 C 1.53876 * 110.03125 * 176.80901 * 3 2 1 9 9 C 1.52991 * 110.03422 * 238.56745 * 8 3 2 10 10 C 1.50702 * 110.03357 * 0.02562 * 8 3 2 11 11 O 1.21281 * 119.99577 * 247.65183 * 10 8 3 12 12 N 1.34774 * 120.00052 * 67.65401 * 10 8 3 13 13 C 1.46500 * 120.00036 * 185.05025 * 12 10 8 14 14 C 1.53945 * 113.73707 * 251.67470 * 13 12 10 15 15 N 1.47579 * 86.11516 * 222.04217 * 14 13 12 16 16 C 1.36939 * 134.49452 * 204.63666 * 15 14 13 17 17 H 1.08000 * 120.00086 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99991 * 0.02562 * 16 15 14 19 19 N 1.31618 * 120.00111 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99943 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47431 * 59.99724 * 20 18 16 22 22 H 1.48500 * 109.46978 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47147 * 299.99530 * 20 18 16 24 24 C 1.47585 * 91.01472 * 24.64304 * 15 14 13 25 25 H 1.08995 * 109.47091 * 60.00018 * 1 2 3 26 26 H 1.09004 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47295 * 299.99560 * 1 2 3 28 28 H 1.08997 * 109.47295 * 240.00440 * 2 1 3 29 29 H 1.09003 * 109.47416 * 120.00006 * 2 1 3 30 30 H 1.08995 * 110.48664 * 335.78430 * 5 3 2 31 31 H 1.09006 * 110.48693 * 98.42957 * 5 3 2 32 32 H 1.08996 * 110.76154 * 156.25834 * 6 5 3 33 33 H 1.09005 * 110.75523 * 279.63116 * 6 5 3 34 34 H 1.09008 * 110.48786 * 80.73789 * 7 6 5 35 35 H 1.09005 * 110.49008 * 203.37971 * 7 6 5 36 36 H 1.09005 * 109.47471 * 60.00349 * 9 8 3 37 37 H 1.08998 * 109.47514 * 180.02562 * 9 8 3 38 38 H 1.09007 * 109.47502 * 300.00235 * 9 8 3 39 39 H 0.97003 * 119.99994 * 5.04295 * 12 10 8 40 40 H 1.09000 * 112.94240 * 23.39837 * 13 12 10 41 41 H 1.08999 * 113.77170 * 336.34102 * 14 13 12 42 42 H 1.09003 * 113.77307 * 107.74478 * 14 13 12 43 43 H 0.96999 * 120.00510 * 180.02562 * 19 18 16 44 44 H 1.09003 * 113.76628 * 221.05701 * 24 15 14 45 45 H 1.08999 * 113.87317 * 89.67343 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6155 1.9883 0.8428 5 6 1.6608 2.1371 -1.3242 6 6 2.8799 3.0374 -1.6437 7 6 4.0774 2.1621 -1.1978 8 6 3.5765 1.4584 0.0805 9 6 4.0285 2.2359 1.3181 10 6 4.1053 0.0482 0.1338 11 8 4.6404 -0.3609 1.1424 12 7 3.9835 -0.7582 -0.9391 13 6 4.3964 -2.1611 -0.8517 14 6 5.6855 -2.4774 -1.6316 15 7 5.0001 -3.7095 -2.0674 16 6 5.4195 -4.9409 -2.4952 17 1 4.6945 -5.6948 -2.7645 18 6 6.7764 -5.2203 -2.5828 19 7 7.6599 -4.3014 -2.2551 20 14 7.3484 -6.8998 -3.1670 21 1 6.8424 -7.1447 -4.5414 22 1 8.8328 -6.9432 -3.1715 23 1 6.8250 -7.9465 -2.2530 24 6 3.6812 -3.0815 -1.8573 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5140 1.3997 -2.1133 31 1 0.7634 2.7421 -1.1944 32 1 2.9336 3.2506 -2.7112 33 1 2.8402 3.9608 -1.0658 34 1 4.3210 1.4286 -1.9665 35 1 4.9437 2.7852 -0.9756 36 1 3.6279 1.7596 2.2129 37 1 5.1175 2.2418 1.3659 38 1 3.6624 3.2609 1.2572 39 1 3.6223 -0.4098 -1.7692 40 1 4.3949 -2.5416 0.1697 41 1 5.8910 -1.7787 -2.4425 42 1 6.5513 -2.6582 -0.9945 43 1 8.6081 -4.4964 -2.3166 44 1 2.9467 -3.7448 -1.4004 45 1 3.2963 -2.5600 -2.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030525618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:35 Heat of formation + Delta-G solvation = 0.696751 kcal Electronic energy + Delta-G solvation = -23330.885945 eV Core-core repulsion = 20156.393522 eV Total energy + Delta-G solvation = -3174.492423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77488 -38.22802 -37.05500 -33.63481 -33.24287 -31.78655 -31.16481 -27.75718 -27.56825 -25.72220 -24.81017 -23.41172 -22.47689 -21.48770 -20.47046 -19.64209 -18.69777 -16.78678 -16.61493 -15.94182 -15.42242 -14.95173 -14.78922 -14.48472 -14.26693 -13.81845 -13.59515 -13.37095 -12.78365 -12.63218 -12.56797 -12.39643 -11.97315 -11.77166 -11.63337 -11.44793 -11.40018 -11.22352 -11.16535 -10.87501 -10.78848 -10.72425 -10.66626 -10.54889 -10.43372 -10.33041 -10.03993 -9.53780 -9.23953 -8.79751 -8.29404 -6.91048 -5.76403 -3.10571 2.98257 3.39900 3.43382 3.45833 3.55989 4.38690 4.43558 4.46084 4.54713 4.95178 5.06140 5.11080 5.15399 5.20748 5.28903 5.33591 5.43080 5.48280 5.49688 5.53382 5.61637 5.69540 5.73008 5.80612 5.85110 5.91849 5.99310 6.00647 6.07883 6.10213 6.14429 6.22620 6.23623 6.29192 6.34489 6.43711 6.58148 6.82863 7.25351 7.39466 7.58013 7.95287 7.98391 8.64666 9.03640 9.69901 10.56990 11.40145 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.004177 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.559029 B = 6701.445845 C = 7021.019296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.076 4.076 4 H 0.079 0.921 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.083 4.083 9 C -0.122 4.122 10 C 0.527 3.473 11 O -0.543 6.543 12 N -0.715 5.715 13 C 0.093 3.907 14 C 0.154 3.846 15 N -0.606 5.606 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.395 0.605 40 H 0.109 0.891 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 16.113 2.357 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.157 4.157 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.086 4.086 9 C -0.180 4.180 10 C 0.313 3.687 11 O -0.421 6.421 12 N -0.367 5.367 13 C -0.012 4.012 14 C 0.028 3.972 15 N -0.333 5.333 16 C -0.354 4.354 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.015 4.015 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.230 0.770 40 H 0.127 0.873 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.525 15.527 3.012 20.175 hybrid contribution 0.251 -0.741 -0.879 1.177 sum -12.274 14.786 2.133 19.334 Atomic orbital electron populations 1.21761 0.95853 1.01597 1.01394 1.22015 0.95982 0.95718 1.03394 1.21849 0.92179 0.96815 0.98634 0.90276 1.22492 0.97870 0.98527 0.96850 1.22497 0.94434 0.98109 1.01019 1.22547 0.98436 0.98923 0.95631 1.21554 0.96171 0.93071 0.97854 1.21655 1.01816 0.98461 0.96054 1.20292 0.78122 0.86971 0.83316 1.90686 1.43224 1.76145 1.31995 1.46316 1.64811 1.11591 1.13975 1.23837 0.98319 0.78250 1.00781 1.22659 0.94451 0.85993 0.94109 1.45666 1.00256 1.09447 1.77908 1.18932 0.91081 0.87333 1.38068 0.90154 1.24811 0.95569 0.98159 1.01694 1.69821 1.00690 1.32841 1.53156 0.86178 0.77594 0.83297 0.78541 1.21157 1.21509 1.20979 1.22869 0.90923 0.93071 0.94613 0.92719 0.92766 0.93161 0.90335 0.91749 0.91151 0.91525 0.91275 0.91409 0.90888 0.90804 0.91944 0.92101 0.92350 0.76967 0.87334 0.95545 0.90606 0.93487 0.93390 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.75 37.16 0.36 -1.01 16 2 C -0.13 -1.47 4.03 -26.73 -0.11 -1.58 16 3 C -0.08 -0.74 2.60 -89.50 -0.23 -0.98 16 4 H 0.08 0.74 7.67 -51.93 -0.40 0.34 16 5 C -0.12 -0.96 5.44 -25.07 -0.14 -1.09 16 6 C -0.12 -0.97 6.91 -24.74 -0.17 -1.14 16 7 C -0.12 -1.18 5.77 -25.07 -0.14 -1.33 16 8 C -0.08 -0.97 0.83 -154.54 -0.13 -1.10 16 9 C -0.12 -1.40 7.48 37.15 0.28 -1.12 16 10 C 0.53 8.35 4.72 -10.99 -0.05 8.30 16 11 O -0.54 -10.98 15.70 5.56 0.09 -10.90 16 12 N -0.72 -11.07 3.31 -55.35 -0.18 -11.25 16 13 C 0.09 1.83 4.40 -70.15 -0.31 1.52 16 14 C 0.15 3.74 7.32 -2.98 -0.02 3.72 16 15 N -0.61 -15.69 3.70 -178.10 -0.66 -16.35 16 16 C -0.23 -6.42 10.70 -15.06 -0.16 -6.58 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -27.78 11.38 55.49 0.63 -27.15 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.11 2.25 8.69 -2.97 -0.03 2.22 16 25 H 0.05 0.44 7.44 -51.93 -0.39 0.06 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.91 5.59 -51.93 -0.29 0.62 16 29 H 0.06 0.87 7.33 -51.93 -0.38 0.49 16 30 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.78 6.52 -51.92 -0.34 0.44 16 35 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 36 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.40 5.17 6.76 -40.82 -0.28 4.90 16 40 H 0.11 2.34 7.52 -51.93 -0.39 1.95 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 2.11 7.15 -51.93 -0.37 1.73 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -32.47 346.35 -8.71 -41.18 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.84 Total: 2.35 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.95 Total: -0.40 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.21 Total: -54.75 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.47 -8.71 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030525618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.879 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds