Wall clock time and date at job start Tue Mar 31 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.09004 * 110.01558 * 55.37006 * 3 2 1 5 5 C 1.54263 * 110.03272 * 293.97783 * 3 2 1 6 6 C 1.54890 * 104.19841 * 217.10619 * 5 3 2 7 7 C 1.54885 * 102.74668 * 37.93947 * 6 5 3 8 8 C 1.53876 * 110.03125 * 176.80901 * 3 2 1 9 9 C 1.52991 * 110.03422 * 238.56745 * 8 3 2 10 10 C 1.50702 * 110.03357 * 0.02562 * 8 3 2 11 11 O 1.21281 * 119.99577 * 247.65183 * 10 8 3 12 12 N 1.34774 * 120.00052 * 67.65401 * 10 8 3 13 13 C 1.46500 * 120.00036 * 185.05025 * 12 10 8 14 14 C 1.53945 * 113.73707 * 251.67470 * 13 12 10 15 15 N 1.47579 * 86.11516 * 222.04217 * 14 13 12 16 16 C 1.36939 * 134.49452 * 204.63666 * 15 14 13 17 17 H 1.08000 * 120.00086 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99991 * 0.02562 * 16 15 14 19 19 N 1.31618 * 120.00111 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99943 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47431 * 59.99724 * 20 18 16 22 22 H 1.48500 * 109.46978 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47147 * 299.99530 * 20 18 16 24 24 C 1.47585 * 91.01472 * 24.64304 * 15 14 13 25 25 H 1.08995 * 109.47091 * 60.00018 * 1 2 3 26 26 H 1.09004 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47295 * 299.99560 * 1 2 3 28 28 H 1.08997 * 109.47295 * 240.00440 * 2 1 3 29 29 H 1.09003 * 109.47416 * 120.00006 * 2 1 3 30 30 H 1.08995 * 110.48664 * 335.78430 * 5 3 2 31 31 H 1.09006 * 110.48693 * 98.42957 * 5 3 2 32 32 H 1.08996 * 110.76154 * 156.25834 * 6 5 3 33 33 H 1.09005 * 110.75523 * 279.63116 * 6 5 3 34 34 H 1.09008 * 110.48786 * 80.73789 * 7 6 5 35 35 H 1.09005 * 110.49008 * 203.37971 * 7 6 5 36 36 H 1.09005 * 109.47471 * 60.00349 * 9 8 3 37 37 H 1.08998 * 109.47514 * 180.02562 * 9 8 3 38 38 H 1.09007 * 109.47502 * 300.00235 * 9 8 3 39 39 H 0.97003 * 119.99994 * 5.04295 * 12 10 8 40 40 H 1.09000 * 112.94240 * 23.39837 * 13 12 10 41 41 H 1.08999 * 113.77170 * 336.34102 * 14 13 12 42 42 H 1.09003 * 113.77307 * 107.74478 * 14 13 12 43 43 H 0.96999 * 120.00510 * 180.02562 * 19 18 16 44 44 H 1.09003 * 113.76628 * 221.05701 * 24 15 14 45 45 H 1.08999 * 113.87317 * 89.67343 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6155 1.9883 0.8428 5 6 1.6608 2.1371 -1.3242 6 6 2.8799 3.0374 -1.6437 7 6 4.0774 2.1621 -1.1978 8 6 3.5765 1.4584 0.0805 9 6 4.0285 2.2359 1.3181 10 6 4.1053 0.0482 0.1338 11 8 4.6404 -0.3609 1.1424 12 7 3.9835 -0.7582 -0.9391 13 6 4.3964 -2.1611 -0.8517 14 6 5.6855 -2.4774 -1.6316 15 7 5.0001 -3.7095 -2.0674 16 6 5.4195 -4.9409 -2.4952 17 1 4.6945 -5.6948 -2.7645 18 6 6.7764 -5.2203 -2.5828 19 7 7.6599 -4.3014 -2.2551 20 14 7.3484 -6.8998 -3.1670 21 1 6.8424 -7.1447 -4.5414 22 1 8.8328 -6.9432 -3.1715 23 1 6.8250 -7.9465 -2.2530 24 6 3.6812 -3.0815 -1.8573 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5140 1.3997 -2.1133 31 1 0.7634 2.7421 -1.1944 32 1 2.9336 3.2506 -2.7112 33 1 2.8402 3.9608 -1.0658 34 1 4.3210 1.4286 -1.9665 35 1 4.9437 2.7852 -0.9756 36 1 3.6279 1.7596 2.2129 37 1 5.1175 2.2418 1.3659 38 1 3.6624 3.2609 1.2572 39 1 3.6223 -0.4098 -1.7692 40 1 4.3949 -2.5416 0.1697 41 1 5.8910 -1.7787 -2.4425 42 1 6.5513 -2.6582 -0.9945 43 1 8.6081 -4.4964 -2.3166 44 1 2.9467 -3.7448 -1.4004 45 1 3.2963 -2.5600 -2.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030525618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:34 Heat of formation + Delta-G solvation = -19.147412 kcal Electronic energy + Delta-G solvation = -23331.746453 eV Core-core repulsion = 20156.393522 eV Total energy + Delta-G solvation = -3175.352931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.92461 -39.77402 -38.40888 -35.17306 -34.20692 -33.70110 -32.02654 -29.52163 -28.47743 -26.81116 -26.64106 -25.02046 -23.45086 -22.68713 -21.54349 -21.00716 -19.97646 -18.79563 -17.77454 -17.29595 -16.95140 -16.39121 -15.84591 -15.71790 -15.67198 -15.27460 -14.69365 -14.51958 -14.23591 -13.79621 -13.49103 -13.42234 -13.27192 -13.22343 -13.18928 -12.85599 -12.76340 -12.62653 -12.42921 -12.34625 -12.03467 -11.98714 -11.81616 -11.57781 -11.48057 -11.42971 -11.30310 -11.22590 -10.89500 -10.58693 -9.82537 -8.99305 -7.93174 -5.29114 1.44305 1.48701 1.54840 1.68994 2.18978 2.49774 3.24345 3.37379 3.57847 3.61990 3.63357 3.85654 4.04109 4.22858 4.27848 4.36102 4.41268 4.49585 4.50564 4.53779 4.65537 4.71459 4.76969 4.80942 4.87735 4.93443 4.97982 5.01595 5.10212 5.17713 5.21015 5.22253 5.24149 5.29388 5.33469 5.36583 5.43417 5.45872 5.49778 5.60236 5.71123 5.87925 6.64373 6.86392 7.34261 7.56653 8.49737 9.23419 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.004177 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.559029 B = 6701.445845 C = 7021.019296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C -0.071 4.071 4 H 0.089 0.911 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.078 4.078 9 C -0.121 4.121 10 C 0.524 3.476 11 O -0.593 6.593 12 N -0.701 5.701 13 C 0.122 3.878 14 C 0.153 3.847 15 N -0.637 5.637 16 C -0.237 4.237 17 H 0.091 0.909 18 C -0.068 4.068 19 N -0.956 5.956 20 Si 0.984 3.016 21 H -0.272 1.272 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.124 3.876 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.411 0.589 40 H 0.086 0.914 41 H 0.025 0.975 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.063 0.937 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 17.535 1.033 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.090 4.090 4 H 0.107 0.893 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.082 4.082 9 C -0.179 4.179 10 C 0.313 3.687 11 O -0.473 6.473 12 N -0.354 5.354 13 C 0.015 3.985 14 C 0.026 3.974 15 N -0.364 5.364 16 C -0.366 4.366 17 H 0.108 0.892 18 C -0.261 4.261 19 N -0.605 5.605 20 Si 0.811 3.189 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.201 1.201 24 C -0.002 4.002 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.249 0.751 40 H 0.104 0.896 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.151 16.980 1.663 22.817 hybrid contribution 1.020 -1.149 -0.411 1.591 sum -14.130 15.831 1.252 21.257 Atomic orbital electron populations 1.21725 0.94122 1.01685 1.02589 1.21968 0.97510 0.96179 1.01389 1.21868 0.90193 0.96355 1.00564 0.89255 1.22492 0.98709 0.98638 0.95345 1.22483 0.92675 0.97942 1.02030 1.22591 0.99779 0.99102 0.94285 1.21623 0.97718 0.89765 0.99056 1.21672 1.00759 1.00097 0.95351 1.21177 0.76822 0.88510 0.82186 1.90667 1.45402 1.77398 1.33821 1.46073 1.64438 1.09882 1.14979 1.23081 0.95692 0.80706 0.98990 1.22535 0.94796 0.86114 0.93945 1.45992 1.02997 1.09352 1.78087 1.19409 0.91571 0.88685 1.36895 0.89162 1.25728 0.95818 1.02015 1.02570 1.70043 1.00463 1.34972 1.55009 0.85079 0.76446 0.78840 0.78523 1.19818 1.22199 1.20088 1.22989 0.89078 0.92713 0.95380 0.90907 0.93313 0.92526 0.90998 0.95057 0.90846 0.89487 0.89958 0.90087 0.91650 0.90706 0.93377 0.93810 0.89106 0.75050 0.89586 0.95770 0.95222 0.94271 0.91920 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.75 71.98 0.70 -1.59 16 2 C -0.13 -2.72 4.03 30.59 0.12 -2.59 16 3 C -0.07 -1.21 2.60 -10.07 -0.03 -1.24 16 4 H 0.09 1.39 7.67 -2.39 -0.02 1.37 16 5 C -0.11 -1.35 5.44 31.67 0.17 -1.18 16 6 C -0.11 -1.33 6.91 31.88 0.22 -1.11 16 7 C -0.12 -2.14 5.77 31.67 0.18 -1.96 16 8 C -0.08 -1.74 0.83 -52.20 -0.04 -1.78 16 9 C -0.12 -2.67 7.48 71.98 0.54 -2.13 16 10 C 0.52 16.84 4.72 87.66 0.41 17.26 16 11 O -0.59 -25.10 15.70 -3.03 -0.05 -25.14 16 12 N -0.70 -21.61 3.31 -447.41 -1.48 -23.09 16 13 C 0.12 4.88 4.40 46.75 0.21 5.08 16 14 C 0.15 7.71 7.32 86.48 0.63 8.35 16 15 N -0.64 -33.36 3.70 -717.40 -2.65 -36.01 16 16 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 17 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 19 N -0.96 -59.96 11.38 21.65 0.25 -59.72 16 20 Si 0.98 46.47 29.55 68.60 2.03 48.49 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.12 4.83 8.69 86.48 0.75 5.58 16 25 H 0.07 0.91 7.44 -2.39 -0.02 0.89 16 26 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.53 5.59 -2.39 -0.01 1.52 16 29 H 0.03 0.84 7.33 -2.39 -0.02 0.82 16 30 H 0.07 0.86 7.79 -2.39 -0.02 0.84 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.06 1.27 6.52 -2.38 -0.02 1.25 16 35 H 0.07 1.33 7.84 -2.38 -0.02 1.32 16 36 H 0.05 1.18 8.07 -2.38 -0.02 1.16 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.41 10.15 6.76 -92.71 -0.63 9.53 16 40 H 0.09 3.89 7.52 -2.39 -0.02 3.87 16 41 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.03 1.75 7.15 -2.39 -0.02 1.73 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 Total: -1.00 -73.81 346.35 3.66 -70.14 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.33 Total: 18.80 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.24 Total: 6.53 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -3.89 Total: -118.83 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.81 3.66 -70.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030525618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.994 kcal (2) G-P(sol) polarization free energy of solvation -73.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds