Wall clock time and date at job start Tue Mar 31 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47424 * 2 1 4 4 H 1.08997 * 110.05991 * 305.00134 * 3 2 1 5 5 C 1.54270 * 110.03343 * 66.41423 * 3 2 1 6 6 C 1.54888 * 104.19981 * 142.89437 * 5 3 2 7 7 C 1.54892 * 102.74720 * 322.06170 * 6 5 3 8 8 C 1.53874 * 110.03595 * 183.58087 * 3 2 1 9 9 C 1.53004 * 110.07352 * 121.40971 * 8 3 2 10 10 C 1.50703 * 110.02698 * 0.02562 * 8 3 2 11 11 O 1.21285 * 120.00044 * 250.28345 * 10 8 3 12 12 N 1.34775 * 120.00229 * 70.29360 * 10 8 3 13 13 C 1.46497 * 120.00031 * 185.08462 * 12 10 8 14 14 C 1.53503 * 114.20378 * 154.99553 * 13 12 10 15 15 N 1.47071 * 87.98216 * 87.71981 * 14 13 12 16 16 C 1.36937 * 136.05608 * 207.08513 * 15 14 13 17 17 H 1.08003 * 120.00393 * 354.78093 * 16 15 14 18 18 C 1.38810 * 120.00208 * 174.77595 * 16 15 14 19 19 N 1.31619 * 120.00230 * 184.11559 * 18 16 15 20 20 Si 1.86804 * 119.99785 * 4.11997 * 18 16 15 21 21 H 1.48501 * 109.47148 * 54.59257 * 20 18 16 22 22 H 1.48500 * 109.47050 * 294.58881 * 20 18 16 23 23 H 1.48501 * 109.47040 * 174.59388 * 20 18 16 24 24 C 1.47064 * 87.88778 * 27.33912 * 15 14 13 25 25 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46728 * 299.99664 * 1 2 3 27 27 H 1.08998 * 109.47224 * 59.99559 * 1 2 3 28 28 H 1.09008 * 109.46728 * 240.00336 * 2 1 3 29 29 H 1.08998 * 109.47224 * 120.00440 * 2 1 3 30 30 H 1.09003 * 110.48257 * 24.21883 * 5 3 2 31 31 H 1.08999 * 110.48998 * 261.57811 * 5 3 2 32 32 H 1.08992 * 110.75680 * 203.74778 * 6 5 3 33 33 H 1.08998 * 110.91427 * 80.44830 * 6 5 3 34 34 H 1.08999 * 110.48731 * 279.26425 * 7 6 5 35 35 H 1.08992 * 110.60009 * 156.67934 * 7 6 5 36 36 H 1.09000 * 109.47087 * 299.28335 * 9 8 3 37 37 H 1.08995 * 109.47024 * 59.28572 * 9 8 3 38 38 H 1.09004 * 109.46683 * 179.28568 * 9 8 3 39 39 H 0.96997 * 119.99742 * 5.08536 * 12 10 8 40 40 H 1.08994 * 113.28471 * 21.93533 * 13 12 10 41 41 H 1.08993 * 113.46785 * 332.94146 * 14 13 12 42 42 H 1.08992 * 113.46471 * 202.49462 * 14 13 12 43 43 H 0.96995 * 119.99997 * 5.00149 * 19 18 16 44 44 H 1.09001 * 113.46379 * 87.43484 * 24 15 14 45 45 H 1.08998 * 113.47132 * 217.87961 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6110 1.9907 -0.8387 5 6 1.6695 2.1340 1.3283 6 6 2.8907 3.0335 1.6419 7 6 4.0853 2.1591 1.1863 8 6 3.5760 1.4584 -0.0903 9 6 4.0212 2.2382 -1.3292 10 6 4.1042 0.0483 -0.1515 11 8 4.7062 -0.4154 0.7938 12 7 3.9078 -0.6975 -1.2568 13 6 4.3220 -2.1026 -1.2755 14 6 3.5466 -2.9741 -2.2733 15 7 4.5336 -2.5918 -3.2945 16 6 4.5437 -2.4676 -4.6582 17 1 3.6783 -2.7613 -5.2337 18 6 5.6664 -1.9643 -5.3010 19 7 5.6473 -1.7689 -6.6024 20 14 7.2042 -1.5643 -4.3188 21 1 7.6216 -2.7602 -3.5437 22 1 6.9185 -0.4447 -3.3860 23 1 8.2950 -1.1698 -5.2460 24 6 5.5065 -2.4076 -2.2072 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.5278 1.3947 2.1167 31 1 0.7713 2.7392 1.2057 32 1 2.9513 3.2441 2.7096 33 1 2.8492 3.9597 1.0687 34 1 4.3337 1.4239 1.9516 35 1 4.9515 2.7808 0.9605 36 1 3.6256 1.7563 -2.2233 37 1 3.6450 3.2595 -1.2702 38 1 5.1101 2.2541 -1.3766 39 1 3.4921 -0.3039 -2.0398 40 1 4.4151 -2.5376 -0.2805 41 1 2.5420 -2.6064 -2.4815 42 1 3.5651 -4.0359 -2.0279 43 1 4.8274 -1.9074 -7.1017 44 1 6.0415 -3.3202 -1.9443 45 1 6.1714 -1.5574 -2.3589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030525619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:39 Heat of formation + Delta-G solvation = 9.603033 kcal Electronic energy + Delta-G solvation = -23750.554879 eV Core-core repulsion = 20576.448661 eV Total energy + Delta-G solvation = -3174.106218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81838 -38.73218 -37.12696 -33.83070 -33.14400 -32.28570 -30.99458 -27.87398 -27.58617 -25.88188 -25.38728 -23.24914 -22.49265 -21.45156 -20.42177 -19.50473 -18.89906 -17.50424 -16.59253 -16.05499 -15.72817 -15.21158 -14.91191 -14.45939 -14.11519 -13.77149 -13.74026 -13.50675 -13.28564 -13.04952 -12.64295 -12.48364 -12.43394 -12.01143 -11.95903 -11.48389 -11.35505 -11.28609 -11.08470 -11.06243 -10.68818 -10.60125 -10.57353 -10.47911 -10.42110 -10.29964 -9.44369 -9.35723 -9.17329 -8.94738 -8.39443 -7.19327 -6.33736 -3.27159 2.88856 3.39745 3.42194 3.46906 3.64356 4.38280 4.42837 4.56512 4.58614 4.72913 4.99892 5.10017 5.14519 5.16376 5.21714 5.27349 5.35677 5.39004 5.45032 5.55424 5.57250 5.70788 5.75014 5.84369 5.85453 5.89636 5.90837 5.97103 6.00852 6.06553 6.10379 6.17927 6.19984 6.22931 6.27176 6.33519 6.35499 6.37870 6.46483 7.02380 7.05916 7.89547 8.19740 8.52816 8.93977 9.46445 10.32178 11.17778 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.005564 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.943681 B = 5030.712080 C = 5375.862216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C -0.077 4.077 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.082 4.082 9 C -0.142 4.142 10 C 0.532 3.468 11 O -0.548 6.548 12 N -0.694 5.694 13 C 0.101 3.899 14 C 0.115 3.885 15 N -0.627 5.627 16 C -0.304 4.304 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.934 5.934 20 Si 1.073 2.927 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.297 1.297 24 C 0.075 3.925 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.407 0.593 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.261 0.739 44 H 0.050 0.950 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 8.547 15.892 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.095 4.095 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.146 4.146 8 C -0.085 4.085 9 C -0.199 4.199 10 C 0.318 3.682 11 O -0.426 6.426 12 N -0.345 5.345 13 C -0.006 4.006 14 C -0.013 4.013 15 N -0.356 5.356 16 C -0.430 4.430 17 H 0.099 0.901 18 C -0.220 4.220 19 N -0.577 5.577 20 Si 0.906 3.094 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.224 1.224 24 C -0.052 4.052 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.243 0.757 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.875 8.724 16.123 19.579 hybrid contribution -1.694 -0.611 -0.440 1.854 sum -8.569 8.113 15.683 19.627 Atomic orbital electron populations 1.21745 0.95749 1.01518 1.01481 1.22061 0.96171 0.95895 1.03492 1.21841 0.92058 0.96851 0.98788 0.90063 1.22427 0.97747 0.98411 0.96767 1.22479 0.94814 0.98012 1.00797 1.22383 0.97505 0.98566 0.96111 1.21512 0.96353 0.92548 0.98108 1.21936 1.02041 1.00095 0.95827 1.20321 0.78328 0.87321 0.82200 1.90631 1.41542 1.73265 1.37182 1.45684 1.61627 1.11091 1.16095 1.22383 0.97611 0.81960 0.98614 1.22698 0.94597 0.96479 0.87504 1.46227 1.07782 1.80031 1.01529 1.20144 1.03738 1.40575 0.78518 0.90058 1.25639 1.01248 0.98176 0.96966 1.70922 1.29689 1.51438 1.05618 0.83676 0.76148 0.76226 0.73326 1.21777 1.22080 1.22410 1.23367 0.94362 0.99286 0.88135 0.92857 0.92969 0.92808 0.90130 0.91769 0.91398 0.91662 0.91558 0.91585 0.89536 0.91417 0.91780 0.91454 0.91939 0.75679 0.88118 0.93243 0.93254 0.92936 0.93200 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.75 37.16 0.36 -1.08 16 2 C -0.14 -1.60 4.10 -26.74 -0.11 -1.71 16 3 C -0.08 -0.82 2.60 -89.50 -0.23 -1.05 16 4 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 5 C -0.12 -1.08 5.46 -25.07 -0.14 -1.22 16 6 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 7 C -0.11 -1.27 5.75 -25.07 -0.14 -1.41 16 8 C -0.08 -1.03 0.83 -154.54 -0.13 -1.16 16 9 C -0.14 -1.71 7.95 37.16 0.30 -1.41 16 10 C 0.53 8.50 4.80 -10.98 -0.05 8.45 16 11 O -0.55 -10.34 15.02 5.55 0.08 -10.26 16 12 N -0.69 -11.48 3.46 -53.48 -0.19 -11.66 16 13 C 0.10 1.81 4.58 -67.67 -0.31 1.50 16 14 C 0.11 2.15 8.44 -8.49 -0.07 2.07 16 15 N -0.63 -14.90 3.69 -184.59 -0.68 -15.58 16 16 C -0.30 -8.52 11.09 -15.06 -0.17 -8.69 16 17 H 0.08 2.40 8.05 -52.48 -0.42 1.98 16 18 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 19 N -0.93 -29.18 13.70 55.49 0.76 -28.42 16 20 Si 1.07 27.28 25.11 -169.99 -4.27 23.02 16 21 H -0.29 -7.07 6.71 56.52 0.38 -6.69 16 22 H -0.29 -7.08 6.31 56.52 0.36 -6.72 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 C 0.07 1.61 5.77 -8.36 -0.05 1.56 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.46 7.46 -51.92 -0.39 0.07 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.03 5.41 -51.92 -0.28 0.75 16 29 H 0.06 0.83 7.58 -51.93 -0.39 0.44 16 30 H 0.07 0.66 7.78 -51.93 -0.40 0.26 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.18 6.79 -51.93 -0.35 0.83 16 35 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 36 H 0.06 0.80 7.11 -51.93 -0.37 0.43 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.41 6.64 7.11 -40.82 -0.29 6.35 16 40 H 0.10 1.71 7.51 -51.93 -0.39 1.32 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 44 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 45 H 0.06 1.35 4.00 -51.93 -0.21 1.15 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -32.03 339.06 -7.94 -39.97 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.75 Total: 4.01 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.01 Total: -6.18 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.11 Total: -55.67 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 27.28 SS G_CDS: -4.27 Total: 23.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.03 -7.94 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030525619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.569 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds