Wall clock time and date at job start Tue Mar 31 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47424 * 2 1 4 4 H 1.08997 * 110.05991 * 305.00134 * 3 2 1 5 5 C 1.54270 * 110.03343 * 66.41423 * 3 2 1 6 6 C 1.54888 * 104.19981 * 142.89437 * 5 3 2 7 7 C 1.54892 * 102.74720 * 322.06170 * 6 5 3 8 8 C 1.53874 * 110.03595 * 183.58087 * 3 2 1 9 9 C 1.53004 * 110.07352 * 121.40971 * 8 3 2 10 10 C 1.50703 * 110.02698 * 0.02562 * 8 3 2 11 11 O 1.21285 * 120.00044 * 250.28345 * 10 8 3 12 12 N 1.34775 * 120.00229 * 70.29360 * 10 8 3 13 13 C 1.46497 * 120.00031 * 185.08462 * 12 10 8 14 14 C 1.53503 * 114.20378 * 154.99553 * 13 12 10 15 15 N 1.47071 * 87.98216 * 87.71981 * 14 13 12 16 16 C 1.36937 * 136.05608 * 207.08513 * 15 14 13 17 17 H 1.08003 * 120.00393 * 354.78093 * 16 15 14 18 18 C 1.38810 * 120.00208 * 174.77595 * 16 15 14 19 19 N 1.31619 * 120.00230 * 184.11559 * 18 16 15 20 20 Si 1.86804 * 119.99785 * 4.11997 * 18 16 15 21 21 H 1.48501 * 109.47148 * 54.59257 * 20 18 16 22 22 H 1.48500 * 109.47050 * 294.58881 * 20 18 16 23 23 H 1.48501 * 109.47040 * 174.59388 * 20 18 16 24 24 C 1.47064 * 87.88778 * 27.33912 * 15 14 13 25 25 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46728 * 299.99664 * 1 2 3 27 27 H 1.08998 * 109.47224 * 59.99559 * 1 2 3 28 28 H 1.09008 * 109.46728 * 240.00336 * 2 1 3 29 29 H 1.08998 * 109.47224 * 120.00440 * 2 1 3 30 30 H 1.09003 * 110.48257 * 24.21883 * 5 3 2 31 31 H 1.08999 * 110.48998 * 261.57811 * 5 3 2 32 32 H 1.08992 * 110.75680 * 203.74778 * 6 5 3 33 33 H 1.08998 * 110.91427 * 80.44830 * 6 5 3 34 34 H 1.08999 * 110.48731 * 279.26425 * 7 6 5 35 35 H 1.08992 * 110.60009 * 156.67934 * 7 6 5 36 36 H 1.09000 * 109.47087 * 299.28335 * 9 8 3 37 37 H 1.08995 * 109.47024 * 59.28572 * 9 8 3 38 38 H 1.09004 * 109.46683 * 179.28568 * 9 8 3 39 39 H 0.96997 * 119.99742 * 5.08536 * 12 10 8 40 40 H 1.08994 * 113.28471 * 21.93533 * 13 12 10 41 41 H 1.08993 * 113.46785 * 332.94146 * 14 13 12 42 42 H 1.08992 * 113.46471 * 202.49462 * 14 13 12 43 43 H 0.96995 * 119.99997 * 5.00149 * 19 18 16 44 44 H 1.09001 * 113.46379 * 87.43484 * 24 15 14 45 45 H 1.08998 * 113.47132 * 217.87961 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6110 1.9907 -0.8387 5 6 1.6695 2.1340 1.3283 6 6 2.8907 3.0335 1.6419 7 6 4.0853 2.1591 1.1863 8 6 3.5760 1.4584 -0.0903 9 6 4.0212 2.2382 -1.3292 10 6 4.1042 0.0483 -0.1515 11 8 4.7062 -0.4154 0.7938 12 7 3.9078 -0.6975 -1.2568 13 6 4.3220 -2.1026 -1.2755 14 6 3.5466 -2.9741 -2.2733 15 7 4.5336 -2.5918 -3.2945 16 6 4.5437 -2.4676 -4.6582 17 1 3.6783 -2.7613 -5.2337 18 6 5.6664 -1.9643 -5.3010 19 7 5.6473 -1.7689 -6.6024 20 14 7.2042 -1.5643 -4.3188 21 1 7.6216 -2.7602 -3.5437 22 1 6.9185 -0.4447 -3.3860 23 1 8.2950 -1.1698 -5.2460 24 6 5.5065 -2.4076 -2.2072 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.5278 1.3947 2.1167 31 1 0.7713 2.7392 1.2057 32 1 2.9513 3.2441 2.7096 33 1 2.8492 3.9597 1.0687 34 1 4.3337 1.4239 1.9516 35 1 4.9515 2.7808 0.9605 36 1 3.6256 1.7563 -2.2233 37 1 3.6450 3.2595 -1.2702 38 1 5.1101 2.2541 -1.3766 39 1 3.4921 -0.3039 -2.0398 40 1 4.4151 -2.5376 -0.2805 41 1 2.5420 -2.6064 -2.4815 42 1 3.5651 -4.0359 -2.0279 43 1 4.8274 -1.9074 -7.1017 44 1 6.0415 -3.3202 -1.9443 45 1 6.1714 -1.5574 -2.3589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030525619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:38 Heat of formation + Delta-G solvation = -10.673646 kcal Electronic energy + Delta-G solvation = -23751.434141 eV Core-core repulsion = 20576.448661 eV Total energy + Delta-G solvation = -3174.985481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99224 -40.20804 -38.36126 -35.26629 -34.34875 -34.01494 -32.04367 -29.69189 -28.46526 -27.06975 -26.80765 -24.84290 -23.52035 -22.77476 -21.23765 -21.16515 -20.07114 -19.54705 -17.76598 -17.58273 -16.79508 -16.61925 -16.10714 -15.84594 -15.60374 -15.27464 -15.12078 -14.90516 -14.45527 -14.31019 -13.65215 -13.49358 -13.40763 -13.40184 -13.24224 -12.88346 -12.81702 -12.51102 -12.34552 -12.15790 -12.04339 -11.84854 -11.52773 -11.46592 -11.41307 -11.32112 -11.28909 -11.10614 -11.08961 -10.65846 -9.85009 -9.22537 -8.62693 -5.47489 1.35184 1.41586 1.59847 1.64527 2.17036 2.48153 2.96347 3.19154 3.46352 3.51211 3.61366 3.68138 4.01920 4.21539 4.27156 4.28360 4.33555 4.36781 4.46125 4.51408 4.58715 4.60897 4.64521 4.73939 4.76953 4.78281 4.88239 4.89094 4.93446 4.98463 5.07609 5.15244 5.17089 5.19225 5.22431 5.28879 5.32042 5.42364 5.47155 5.56193 5.61196 5.94519 6.57501 6.69691 7.23013 7.31395 8.25211 8.91567 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.005564 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.943681 B = 5030.712080 C = 5375.862216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C -0.074 4.074 4 H 0.095 0.905 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.110 4.110 8 C -0.080 4.080 9 C -0.140 4.140 10 C 0.531 3.469 11 O -0.579 6.579 12 N -0.695 5.695 13 C 0.122 3.878 14 C 0.120 3.880 15 N -0.652 5.652 16 C -0.282 4.282 17 H 0.057 0.943 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 1.109 2.891 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.307 1.307 24 C 0.065 3.935 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.408 0.592 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.249 0.751 44 H 0.062 0.938 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 9.728 18.012 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.092 4.092 4 H 0.113 0.887 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.083 4.083 9 C -0.198 4.198 10 C 0.319 3.681 11 O -0.458 6.458 12 N -0.345 5.345 13 C 0.014 3.986 14 C -0.006 4.006 15 N -0.381 5.381 16 C -0.409 4.409 17 H 0.074 0.926 18 C -0.269 4.269 19 N -0.618 5.618 20 Si 0.938 3.062 21 H -0.200 1.200 22 H -0.205 1.205 23 H -0.235 1.235 24 C -0.061 4.061 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.245 0.755 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.039 9.896 18.294 22.299 hybrid contribution -1.423 -1.046 -1.036 2.047 sum -9.462 8.850 17.258 21.580 Atomic orbital electron populations 1.21709 0.94228 1.01727 1.02390 1.21992 0.97494 0.96147 1.01760 1.21878 0.90403 0.96637 1.00308 0.88689 1.22423 0.98656 0.98392 0.95516 1.22471 0.93140 0.97967 1.01717 1.22384 0.98904 0.98457 0.95029 1.21601 0.97736 0.90168 0.98819 1.21947 1.01164 1.01505 0.95144 1.20973 0.77395 0.88437 0.81257 1.90616 1.42896 1.74212 1.38120 1.45746 1.61576 1.10707 1.16478 1.22155 0.95195 0.82770 0.98442 1.22875 0.94277 0.97781 0.85671 1.46247 1.10528 1.80598 1.00741 1.20013 1.02256 1.37954 0.80705 0.92556 1.26668 1.04061 0.99084 0.97107 1.71001 1.29316 1.54556 1.06901 0.83204 0.73305 0.77156 0.72519 1.20031 1.20511 1.23514 1.23587 0.95133 0.99258 0.88110 0.93084 0.91734 0.92164 0.91666 0.93592 0.92062 0.89551 0.90518 0.89970 0.91811 0.91197 0.92485 0.88770 0.93365 0.75546 0.86571 0.92118 0.91088 0.94206 0.92024 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.75 71.98 0.70 -1.75 16 2 C -0.14 -2.90 4.10 30.59 0.13 -2.77 16 3 C -0.07 -1.39 2.60 -10.07 -0.03 -1.41 16 4 H 0.09 1.57 7.67 -2.39 -0.02 1.55 16 5 C -0.11 -1.74 5.46 31.67 0.17 -1.56 16 6 C -0.12 -1.76 6.91 31.89 0.22 -1.54 16 7 C -0.11 -2.39 5.75 31.67 0.18 -2.21 16 8 C -0.08 -1.87 0.83 -52.20 -0.04 -1.92 16 9 C -0.14 -3.11 7.95 71.98 0.57 -2.54 16 10 C 0.53 16.38 4.80 87.66 0.42 16.81 16 11 O -0.58 -21.39 15.02 -3.05 -0.05 -21.43 16 12 N -0.69 -22.08 3.46 -441.51 -1.53 -23.61 16 13 C 0.12 4.12 4.58 45.55 0.21 4.33 16 14 C 0.12 4.24 8.44 83.19 0.70 4.94 16 15 N -0.65 -30.29 3.69 -737.91 -2.72 -33.01 16 16 C -0.28 -15.91 11.09 84.03 0.93 -14.98 16 17 H 0.06 3.41 8.05 -2.91 -0.02 3.38 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -62.23 13.70 21.65 0.30 -61.93 16 20 Si 1.11 55.37 25.11 68.60 1.72 57.09 16 21 H -0.27 -12.78 6.71 99.48 0.67 -12.11 16 22 H -0.28 -13.01 6.31 99.48 0.63 -12.38 16 23 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 24 C 0.07 2.69 5.77 83.27 0.48 3.17 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.95 7.46 -2.38 -0.02 0.93 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.58 5.41 -2.38 -0.01 1.56 16 29 H 0.05 1.14 7.58 -2.39 -0.02 1.12 16 30 H 0.06 1.04 7.78 -2.39 -0.02 1.02 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.69 6.79 -2.39 -0.02 1.68 16 35 H 0.07 1.46 7.84 -2.39 -0.02 1.44 16 36 H 0.06 1.34 7.11 -2.39 -0.02 1.32 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.41 12.87 7.11 -92.71 -0.66 12.21 16 40 H 0.12 3.68 7.51 -2.39 -0.02 3.66 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.25 15.88 8.73 -92.71 -0.81 15.07 16 44 H 0.06 2.43 8.08 -2.39 -0.02 2.41 16 45 H 0.04 1.97 4.00 -2.39 -0.01 1.96 16 Total: -1.00 -69.74 339.06 2.99 -66.75 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.15 Total: 21.66 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.12 Total: -5.51 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -3.95 Total: -118.55 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 55.37 SS G_CDS: 1.72 Total: 57.09 kcal Total: -69.74 2.99 -66.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030525619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.073 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds