Wall clock time and date at job start Tue Mar 31 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47372 * 55.00205 * 3 2 1 5 5 C 1.52997 * 109.46975 * 294.99833 * 3 2 1 6 6 C 1.53006 * 109.47164 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 3 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 9 8 7 12 12 O 1.21289 * 119.99822 * 119.99794 * 11 9 8 13 13 N 1.34777 * 120.00115 * 299.99704 * 11 9 8 14 14 C 1.46492 * 120.00147 * 180.02562 * 13 11 9 15 15 C 1.53944 * 113.74132 * 253.74083 * 14 13 11 16 16 N 1.47812 * 86.04055 * 222.08434 * 15 14 13 17 17 C 1.36936 * 134.46028 * 204.65109 * 16 15 14 18 18 H 1.08003 * 120.00191 * 179.86374 * 17 16 15 19 19 C 1.38807 * 119.99982 * 359.85612 * 17 16 15 20 20 N 1.31618 * 120.00215 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47067 * 90.00232 * 21 19 17 23 23 H 1.48497 * 109.47398 * 210.00190 * 21 19 17 24 24 H 1.48500 * 109.47215 * 330.00217 * 21 19 17 25 25 C 1.47584 * 91.04823 * 24.54589 * 16 15 14 26 26 H 1.09002 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47221 * 300.00499 * 1 2 3 28 28 H 1.08997 * 109.47219 * 59.99756 * 1 2 3 29 29 H 1.08998 * 109.46646 * 239.99644 * 2 1 3 30 30 H 1.09001 * 109.46843 * 119.99930 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00370 * 5 3 2 32 32 H 1.09000 * 109.47140 * 60.00388 * 5 3 2 33 33 H 1.08998 * 109.46505 * 299.99708 * 6 5 3 34 34 H 1.08996 * 109.46884 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 37 37 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 39 39 H 0.97003 * 119.99640 * 0.02562 * 13 11 9 40 40 H 1.08995 * 112.94884 * 25.33028 * 14 13 11 41 41 H 1.09003 * 113.77017 * 336.34646 * 15 14 13 42 42 H 1.09008 * 113.77179 * 107.74548 * 15 14 13 43 43 H 0.96994 * 120.00492 * 179.97438 * 20 19 17 44 44 H 1.08995 * 113.77049 * 221.15481 * 25 16 15 45 45 H 1.08999 * 113.86577 * 89.77144 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 2.1459 3.5688 -1.3077 7 6 3.6707 3.5701 -1.1822 8 6 4.0754 2.8860 0.1252 9 6 3.5649 1.4437 0.1254 10 1 3.9991 0.9044 -0.7164 11 6 3.9630 0.7702 1.4134 12 8 3.1110 0.3322 2.1573 13 7 5.2658 0.6545 1.7387 14 6 5.6528 -0.0008 2.9905 15 6 6.1427 0.9754 4.0753 16 7 7.1983 -0.0218 4.3512 17 6 7.9678 -0.3272 5.4420 18 1 8.6897 -1.1285 5.3863 19 6 7.8201 0.3934 6.6192 20 7 6.9401 1.3697 6.6872 21 14 8.8703 -0.0226 8.1069 22 1 10.1223 0.7750 8.0676 23 1 8.1193 0.2958 9.3477 24 1 9.2044 -1.4694 8.0881 25 6 7.0879 -0.5578 2.9806 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5874 -2.1492 32 1 0.5490 2.1252 -1.3969 33 1 1.7115 4.1080 -0.4659 34 1 1.8571 4.0562 -2.2389 35 1 4.0344 4.5976 -1.1820 36 1 4.1049 3.0308 -2.0240 37 1 5.1617 2.8873 0.2147 38 1 3.6411 3.4253 0.9670 39 1 5.9472 1.0051 1.1439 40 1 4.9080 -0.7131 3.3452 41 1 6.5214 1.9179 3.6797 42 1 5.4382 1.1097 4.8962 43 1 6.8366 1.8730 7.5099 44 1 7.1366 -1.6455 2.9289 45 1 7.7444 -0.0681 2.2614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031166254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:29 Heat of formation + Delta-G solvation = -13.131966 kcal Electronic energy + Delta-G solvation = -22687.730746 eV Core-core repulsion = 19512.638665 eV Total energy + Delta-G solvation = -3175.092081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32417 -38.35715 -37.06190 -34.18300 -33.24964 -31.94434 -30.92408 -29.07773 -27.40114 -24.81942 -24.24604 -23.73539 -22.57513 -20.71728 -20.34177 -19.74602 -19.39175 -16.84224 -16.78129 -15.88754 -15.09043 -14.94390 -14.83636 -14.62736 -14.12751 -14.08292 -13.79763 -13.33087 -13.15169 -12.77297 -12.66551 -12.44566 -11.82007 -11.63321 -11.58114 -11.46354 -11.44143 -11.23178 -11.12164 -10.89667 -10.81492 -10.77187 -10.54780 -10.41116 -10.31909 -10.06847 -9.99224 -9.53824 -9.09879 -8.80936 -8.36400 -6.91871 -5.77319 -3.11371 2.97435 3.38911 3.43221 3.46476 3.57478 4.45054 4.51325 4.58457 4.64978 4.97290 5.05152 5.12056 5.23177 5.27183 5.27662 5.31000 5.38674 5.44657 5.48424 5.59563 5.61578 5.65855 5.71524 5.90973 5.92935 5.96492 6.00370 6.03335 6.07453 6.14313 6.20220 6.22803 6.25730 6.41951 6.48963 6.54393 6.61271 6.84854 7.24269 7.38484 7.56640 7.94027 7.97179 8.63860 9.02699 9.69082 10.55939 11.39389 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029312 B = 0.003546 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.994995 B = 7894.590770 C = 8243.744653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.064 4.064 4 H 0.076 0.924 5 C -0.115 4.115 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.102 4.102 10 H 0.092 0.908 11 C 0.514 3.486 12 O -0.538 6.538 13 N -0.716 5.716 14 C 0.092 3.908 15 C 0.155 3.845 16 N -0.607 5.607 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.112 3.888 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.395 0.605 40 H 0.109 0.891 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 2.742 -19.011 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.083 4.083 4 H 0.095 0.905 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.124 4.124 10 H 0.110 0.890 11 C 0.300 3.700 12 O -0.415 6.415 13 N -0.366 5.366 14 C -0.013 4.013 15 C 0.028 3.972 16 N -0.334 5.334 17 C -0.354 4.354 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.015 4.015 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.228 0.772 40 H 0.127 0.873 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.564 2.441 -18.105 20.621 hybrid contribution 1.108 0.141 0.508 1.228 sum -8.456 2.581 -17.597 19.693 Atomic orbital electron populations 1.21758 0.96357 1.01087 1.01282 1.21835 0.95688 0.96318 1.03208 1.20933 0.92572 0.96901 0.97898 0.90522 1.21661 1.00750 0.95408 0.97438 1.21568 0.95760 0.97001 1.01618 1.21521 0.96026 1.00498 0.97364 1.21533 1.00899 0.93902 0.98637 1.21393 0.97870 0.96926 0.96176 0.89006 1.20585 0.82723 0.79213 0.87516 1.90629 1.49652 1.48922 1.52312 1.46187 1.07043 1.59659 1.23729 1.23847 0.96281 0.97470 0.83702 1.22698 0.89893 0.90968 0.93593 1.45726 1.44066 1.37280 1.06317 1.18987 1.14476 1.13937 0.87962 0.90081 1.24813 0.99475 0.98000 0.97995 1.69828 1.36642 1.23224 1.26805 0.86097 0.79411 0.77821 0.82277 1.21581 1.21553 1.20537 1.22863 0.92360 0.97640 0.88631 0.93257 0.92797 0.93256 0.93143 0.88869 0.92142 0.91623 0.91911 0.92214 0.91795 0.91917 0.91341 0.91183 0.77159 0.87290 0.95475 0.90596 0.93539 0.93354 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.13 -1.58 5.14 -26.73 -0.14 -1.72 16 3 C -0.06 -0.72 1.36 -90.62 -0.12 -0.84 16 4 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 5 C -0.12 -1.01 4.96 -26.73 -0.13 -1.14 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 7 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 8 C -0.11 -1.12 5.10 -26.73 -0.14 -1.26 16 9 C -0.10 -1.15 2.06 -91.77 -0.19 -1.34 16 10 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 11 C 0.51 7.88 6.83 -10.98 -0.08 7.80 16 12 O -0.54 -10.28 13.29 5.55 0.07 -10.21 16 13 N -0.72 -10.95 5.27 -55.34 -0.29 -11.24 16 14 C 0.09 1.80 4.40 -70.14 -0.31 1.49 16 15 C 0.15 3.74 7.33 -2.84 -0.02 3.72 16 16 N -0.61 -15.74 3.70 -177.86 -0.66 -16.40 16 17 C -0.23 -6.41 10.70 -15.06 -0.16 -6.57 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.71 11.39 55.49 0.63 -27.08 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.11 2.25 8.69 -2.97 -0.03 2.23 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.40 5.41 -51.93 -0.28 1.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.65 7.57 -51.93 -0.39 0.25 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.39 4.93 8.13 -40.82 -0.33 4.60 16 40 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 2.10 7.17 -51.92 -0.37 1.72 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -32.10 347.06 -9.31 -41.41 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.91 Total: 2.34 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.36 Total: -1.33 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.32 Total: -54.72 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.10 -9.31 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031166254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.274 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds