Wall clock time and date at job start Tue Mar 31 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47372 * 55.00205 * 3 2 1 5 5 C 1.52997 * 109.46975 * 294.99833 * 3 2 1 6 6 C 1.53006 * 109.47164 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 3 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 9 8 7 12 12 O 1.21289 * 119.99822 * 119.99794 * 11 9 8 13 13 N 1.34777 * 120.00115 * 299.99704 * 11 9 8 14 14 C 1.46492 * 120.00147 * 180.02562 * 13 11 9 15 15 C 1.53944 * 113.74132 * 253.74083 * 14 13 11 16 16 N 1.47812 * 86.04055 * 222.08434 * 15 14 13 17 17 C 1.36936 * 134.46028 * 204.65109 * 16 15 14 18 18 H 1.08003 * 120.00191 * 179.86374 * 17 16 15 19 19 C 1.38807 * 119.99982 * 359.85612 * 17 16 15 20 20 N 1.31618 * 120.00215 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47067 * 90.00232 * 21 19 17 23 23 H 1.48497 * 109.47398 * 210.00190 * 21 19 17 24 24 H 1.48500 * 109.47215 * 330.00217 * 21 19 17 25 25 C 1.47584 * 91.04823 * 24.54589 * 16 15 14 26 26 H 1.09002 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47221 * 300.00499 * 1 2 3 28 28 H 1.08997 * 109.47219 * 59.99756 * 1 2 3 29 29 H 1.08998 * 109.46646 * 239.99644 * 2 1 3 30 30 H 1.09001 * 109.46843 * 119.99930 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00370 * 5 3 2 32 32 H 1.09000 * 109.47140 * 60.00388 * 5 3 2 33 33 H 1.08998 * 109.46505 * 299.99708 * 6 5 3 34 34 H 1.08996 * 109.46884 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 37 37 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 39 39 H 0.97003 * 119.99640 * 0.02562 * 13 11 9 40 40 H 1.08995 * 112.94884 * 25.33028 * 14 13 11 41 41 H 1.09003 * 113.77017 * 336.34646 * 15 14 13 42 42 H 1.09008 * 113.77179 * 107.74548 * 15 14 13 43 43 H 0.96994 * 120.00492 * 179.97438 * 20 19 17 44 44 H 1.08995 * 113.77049 * 221.15481 * 25 16 15 45 45 H 1.08999 * 113.86577 * 89.77144 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 2.1459 3.5688 -1.3077 7 6 3.6707 3.5701 -1.1822 8 6 4.0754 2.8860 0.1252 9 6 3.5649 1.4437 0.1254 10 1 3.9991 0.9044 -0.7164 11 6 3.9630 0.7702 1.4134 12 8 3.1110 0.3322 2.1573 13 7 5.2658 0.6545 1.7387 14 6 5.6528 -0.0008 2.9905 15 6 6.1427 0.9754 4.0753 16 7 7.1983 -0.0218 4.3512 17 6 7.9678 -0.3272 5.4420 18 1 8.6897 -1.1285 5.3863 19 6 7.8201 0.3934 6.6192 20 7 6.9401 1.3697 6.6872 21 14 8.8703 -0.0226 8.1069 22 1 10.1223 0.7750 8.0676 23 1 8.1193 0.2958 9.3477 24 1 9.2044 -1.4694 8.0881 25 6 7.0879 -0.5578 2.9806 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5874 -2.1492 32 1 0.5490 2.1252 -1.3969 33 1 1.7115 4.1080 -0.4659 34 1 1.8571 4.0562 -2.2389 35 1 4.0344 4.5976 -1.1820 36 1 4.1049 3.0308 -2.0240 37 1 5.1617 2.8873 0.2147 38 1 3.6411 3.4253 0.9670 39 1 5.9472 1.0051 1.1439 40 1 4.9080 -0.7131 3.3452 41 1 6.5214 1.9179 3.6797 42 1 5.4382 1.1097 4.8962 43 1 6.8366 1.8730 7.5099 44 1 7.1366 -1.6455 2.9289 45 1 7.7444 -0.0681 2.2614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031166254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:29 Heat of formation + Delta-G solvation = -33.182730 kcal Electronic energy + Delta-G solvation = -22688.600212 eV Core-core repulsion = 19512.638665 eV Total energy + Delta-G solvation = -3175.961548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49757 -39.81101 -38.37709 -35.37174 -34.57581 -33.73402 -31.93565 -29.88739 -29.33555 -26.63395 -25.63041 -24.60485 -24.01544 -21.60936 -21.44392 -21.24038 -20.53432 -18.79541 -18.03000 -17.34684 -16.96641 -16.02445 -15.90652 -15.79843 -15.67082 -15.12843 -14.87157 -14.68969 -14.12246 -14.02580 -13.87525 -13.42122 -13.39288 -13.21789 -13.19834 -12.82766 -12.63029 -12.47509 -12.34779 -12.30632 -12.02974 -11.97910 -11.88306 -11.60035 -11.52434 -11.37946 -11.24721 -10.90476 -10.82584 -10.31090 -9.86517 -8.99042 -7.93463 -5.29131 1.44356 1.47238 1.55999 1.72100 2.22899 2.50414 3.24382 3.38225 3.64871 3.73632 3.81427 3.86691 4.16202 4.23783 4.30967 4.41210 4.41766 4.49335 4.52081 4.52897 4.57256 4.66552 4.73169 4.82123 4.88188 4.89734 5.00113 5.06781 5.15988 5.20362 5.22964 5.26034 5.26878 5.31626 5.40068 5.42442 5.46198 5.48245 5.65742 5.66060 5.76452 5.87952 6.68916 6.86365 7.39724 7.56542 8.49705 9.23360 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029312 B = 0.003546 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.994995 B = 7894.590770 C = 8243.744653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C -0.063 4.063 4 H 0.048 0.952 5 C -0.108 4.108 6 C -0.123 4.123 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.091 4.091 10 H 0.121 0.879 11 C 0.509 3.491 12 O -0.579 6.579 13 N -0.705 5.705 14 C 0.121 3.879 15 C 0.153 3.847 16 N -0.639 5.639 17 C -0.237 4.237 18 H 0.091 0.909 19 C -0.069 4.069 20 N -0.956 5.956 21 Si 0.983 3.017 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.122 3.878 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.413 0.587 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 2.513 -21.992 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.082 4.082 4 H 0.066 0.934 5 C -0.145 4.145 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.112 4.112 10 H 0.139 0.861 11 C 0.298 3.702 12 O -0.459 6.459 13 N -0.356 5.356 14 C 0.014 3.986 15 C 0.026 3.974 16 N -0.366 5.366 17 C -0.365 4.365 18 H 0.108 0.892 19 C -0.262 4.262 20 N -0.605 5.605 21 Si 0.811 3.189 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.190 1.190 25 C -0.003 4.003 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.250 0.750 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.677 2.204 -21.155 22.971 hybrid contribution 0.785 0.195 1.397 1.614 sum -7.892 2.399 -19.758 21.411 Atomic orbital electron populations 1.21739 0.95506 1.01433 1.01573 1.21775 0.96549 0.96537 1.02140 1.20918 0.92332 0.96437 0.98554 0.93385 1.21618 1.01268 0.95618 0.96023 1.21585 0.95784 0.96548 1.02084 1.21510 0.96000 1.00946 0.96415 1.21556 1.01274 0.92800 0.99296 1.21419 0.98115 0.97505 0.94175 0.86133 1.21445 0.81926 0.78321 0.88555 1.90633 1.50760 1.50484 1.54012 1.45947 1.07896 1.59402 1.22366 1.23075 0.95891 0.95385 0.84210 1.22575 0.89220 0.91798 0.93771 1.46064 1.44209 1.38116 1.08253 1.19453 1.14254 1.13746 0.89029 0.89159 1.25725 1.01071 0.98317 1.01090 1.70045 1.38650 1.24660 1.27110 0.85008 0.77517 0.78265 0.78109 1.20981 1.22288 1.18951 1.23005 0.92412 0.98626 0.86270 0.92925 0.94285 0.91141 0.91463 0.92488 0.90468 0.91092 0.93150 0.90344 0.90994 0.90087 0.90422 0.93444 0.74988 0.89414 0.95727 0.95231 0.94290 0.91870 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.67 71.98 0.70 -2.25 16 2 C -0.13 -3.05 5.14 30.59 0.16 -2.89 16 3 C -0.06 -1.35 1.36 -10.80 -0.01 -1.37 16 4 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 5 C -0.11 -1.58 4.96 30.60 0.15 -1.43 16 6 C -0.12 -1.66 5.92 30.60 0.18 -1.47 16 7 C -0.11 -1.45 5.92 30.59 0.18 -1.27 16 8 C -0.11 -2.03 5.10 30.59 0.16 -1.87 16 9 C -0.09 -1.89 2.06 -11.54 -0.02 -1.91 16 10 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 11 C 0.51 15.54 6.83 87.66 0.60 16.14 16 12 O -0.58 -23.06 13.29 -3.06 -0.04 -23.10 16 13 N -0.70 -20.90 5.27 -447.38 -2.36 -23.25 16 14 C 0.12 4.77 4.40 46.75 0.21 4.97 16 15 C 0.15 7.66 7.33 86.44 0.63 8.29 16 16 N -0.64 -33.37 3.70 -716.61 -2.65 -36.03 16 17 C -0.24 -13.48 10.70 84.03 0.90 -12.58 16 18 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 20 N -0.96 -59.82 11.39 21.65 0.25 -59.57 16 21 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 25 C 0.12 4.73 8.69 86.48 0.75 5.48 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.04 0.88 8.14 -2.38 -0.02 0.87 16 28 H 0.07 1.12 6.56 -2.39 -0.02 1.10 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.76 5.41 -2.39 -0.01 1.74 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.99 6.56 -2.39 -0.02 0.97 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.27 7.57 -2.39 -0.02 1.25 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.41 9.31 8.13 -92.71 -0.75 8.55 16 40 H 0.09 3.88 7.51 -2.39 -0.02 3.87 16 41 H 0.02 1.23 8.14 -2.39 -0.02 1.22 16 42 H 0.03 1.73 7.17 -2.38 -0.02 1.71 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 Total: -1.00 -73.01 347.06 2.47 -70.54 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.20 Total: 18.67 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.04 Total: 4.26 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -4.76 Total: -118.85 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -73.01 2.47 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031166254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.358 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds