Wall clock time and date at job start Tue Mar 31 2020 02:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47325 * 2 1 4 4 H 1.09003 * 110.43046 * 52.45958 * 3 2 1 5 5 C 1.54271 * 110.48382 * 289.77910 * 3 2 1 6 6 C 1.53872 * 106.59578 * 217.71135 * 5 3 2 7 7 C 1.54264 * 106.59991 * 0.02562 * 6 5 3 8 8 C 1.54882 * 110.48644 * 175.00502 * 3 2 1 9 9 H 1.09004 * 110.75802 * 38.11919 * 8 3 2 10 10 C 1.50699 * 110.75678 * 274.93758 * 8 3 2 11 11 O 1.21287 * 119.99828 * 359.97438 * 10 8 3 12 12 N 1.34778 * 120.00541 * 180.02562 * 10 8 3 13 13 C 1.46497 * 120.00488 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47258 * 180.02562 * 13 12 10 15 15 C 1.53495 * 114.20770 * 175.00180 * 14 13 12 16 16 N 1.47068 * 87.98832 * 87.71390 * 15 14 13 17 17 C 1.36931 * 136.05648 * 207.08648 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72253 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 C 1.47071 * 87.88415 * 27.34050 * 16 15 14 26 26 H 1.08993 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46679 * 299.99808 * 1 2 3 28 28 H 1.09003 * 109.47310 * 59.99397 * 1 2 3 29 29 H 1.09004 * 109.46679 * 240.00192 * 2 1 3 30 30 H 1.08996 * 109.47462 * 120.00213 * 2 1 3 31 31 H 1.08994 * 110.03525 * 336.99485 * 5 3 2 32 32 H 1.09000 * 110.02868 * 98.42969 * 5 3 2 33 33 H 1.08998 * 110.03266 * 119.28718 * 6 5 3 34 34 H 1.09007 * 110.03246 * 240.67198 * 6 5 3 35 35 H 1.08998 * 110.49115 * 264.93362 * 7 6 5 36 36 H 1.09003 * 110.48676 * 142.29139 * 7 6 5 37 37 H 0.97006 * 119.99389 * 359.97438 * 12 10 8 38 38 H 1.09002 * 109.46834 * 59.99604 * 13 12 10 39 39 H 1.09001 * 109.46529 * 300.00176 * 13 12 10 40 40 H 1.08999 * 113.28271 * 41.93034 * 14 13 12 41 41 H 1.09004 * 113.46737 * 332.93437 * 15 14 13 42 42 H 1.08995 * 113.47006 * 202.49735 * 15 14 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 44 44 H 1.08998 * 113.46338 * 87.43811 * 25 16 15 45 45 H 1.08993 * 113.47050 * 217.87717 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0087 0.8099 5 6 1.7590 2.1145 -1.3599 6 6 2.9737 3.0073 -1.6684 7 6 3.9508 2.8461 -0.4856 8 6 3.5835 1.4718 0.1263 9 1 4.0333 0.6594 -0.4445 10 6 4.0025 1.4014 1.5722 11 8 3.1623 1.3337 2.4444 12 7 5.3106 1.4146 1.8963 13 6 5.7179 1.3468 3.3019 14 6 7.2448 1.3787 3.3926 15 6 7.7891 1.4348 4.8267 16 7 7.7439 -0.0350 4.8461 17 6 7.6084 -1.0048 5.8033 18 1 7.4999 -0.7274 6.8414 19 6 7.6042 -2.3442 5.4386 20 7 7.7359 -2.6821 4.1734 21 14 7.4116 -3.6669 6.7436 22 1 5.9702 -3.9701 6.9320 23 1 8.1237 -4.8962 6.3112 24 1 7.9879 -3.1857 8.0249 25 6 7.9148 -0.0052 3.3856 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6464 1.3564 -2.1349 32 1 0.8559 2.7216 -1.2968 33 1 3.4506 2.6824 -2.5931 34 1 2.6600 4.0475 -1.7558 35 1 3.7999 3.6408 0.2450 36 1 4.9817 2.8433 -0.8399 37 1 5.9825 1.4691 1.1987 38 1 5.3465 0.4220 3.7435 39 1 5.3042 2.1988 3.8414 40 1 7.7018 2.0977 2.7126 41 1 7.1020 1.8995 5.5339 42 1 8.7992 1.8390 4.8921 43 1 7.7333 -3.6181 3.9187 44 1 8.9582 0.0193 3.0712 45 1 7.3350 -0.7672 2.8650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031953473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:54 Heat of formation + Delta-G solvation = -9.071734 kcal Electronic energy + Delta-G solvation = -22407.712678 eV Core-core repulsion = 19232.796662 eV Total energy + Delta-G solvation = -3174.916016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07833 -38.45686 -37.36885 -34.21373 -33.19100 -32.14577 -29.84465 -28.24695 -27.66634 -25.83519 -24.57444 -23.06136 -22.35136 -21.48746 -19.96895 -19.63393 -18.66813 -17.02248 -16.70919 -15.84526 -15.45818 -15.03365 -14.84471 -14.67947 -14.28639 -13.78386 -13.51352 -13.37235 -13.31481 -13.03665 -12.56338 -12.36038 -12.04097 -11.91727 -11.53326 -11.37686 -11.27370 -11.07645 -10.96761 -10.78176 -10.73884 -10.57529 -10.50146 -10.49318 -10.44883 -9.90956 -9.78657 -9.44592 -9.21269 -8.79538 -8.59431 -6.86440 -5.75039 -3.07074 2.95340 3.41712 3.46245 3.47828 3.51426 4.34985 4.46618 4.48355 4.61313 5.03259 5.13339 5.17778 5.27283 5.28908 5.31267 5.33798 5.38698 5.42680 5.49982 5.54730 5.62257 5.65121 5.72475 5.78516 5.89017 5.95372 6.04061 6.07437 6.11532 6.15109 6.20281 6.35360 6.37862 6.44187 6.54711 6.61292 6.73549 6.87801 7.19424 7.30863 7.57046 7.87048 7.99814 8.57155 9.05795 9.72624 10.65799 11.42518 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.003902 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.265389 B = 7173.618710 C = 8054.328136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.071 4.071 4 H 0.087 0.913 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.113 4.113 9 H 0.100 0.900 10 C 0.517 3.483 11 O -0.542 6.542 12 N -0.722 5.722 13 C 0.151 3.849 14 C -0.161 4.161 15 C 0.126 3.874 16 N -0.609 5.609 17 C -0.218 4.218 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.158 3.842 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 11.273 -13.927 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.090 4.090 4 H 0.105 0.895 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.135 4.135 9 H 0.119 0.881 10 C 0.302 3.698 11 O -0.420 6.420 12 N -0.372 5.372 13 C 0.028 3.972 14 C -0.181 4.181 15 C -0.001 4.001 16 N -0.335 5.335 17 C -0.345 4.345 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.032 3.968 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.342 10.867 -13.128 19.434 hybrid contribution 0.583 -0.808 0.367 1.062 sum -8.759 10.059 -12.761 18.459 Atomic orbital electron populations 1.21742 0.95946 1.01345 1.01576 1.21552 0.95902 0.95863 1.02126 1.21864 0.92719 0.96854 0.97579 0.89463 1.22243 0.97924 0.98618 0.97010 1.22112 0.95949 0.99933 0.98037 1.22305 0.99558 0.95640 0.97518 1.22380 0.98054 0.99635 0.93384 0.88148 1.20418 0.82460 0.76073 0.90812 1.90688 1.51094 1.49500 1.50672 1.46058 1.07025 1.74578 1.09578 1.20980 0.93205 1.02482 0.80505 1.23309 0.94385 1.01116 0.99275 1.22351 0.97089 0.87695 0.92919 1.45624 1.84364 0.99697 1.03819 1.18936 1.42868 0.84992 0.87691 0.90155 1.24769 1.02357 0.96795 0.96445 1.69817 1.56190 1.16174 1.14561 0.86130 0.77752 0.81459 0.80501 1.21463 1.21661 1.20676 1.22198 0.96234 0.91599 0.86728 0.93016 0.92663 0.93015 0.92292 0.91361 0.91632 0.91828 0.91682 0.91774 0.91172 0.90969 0.76964 0.90018 0.92441 0.91185 0.94049 0.94701 0.93724 0.95795 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.79 37.16 0.36 -1.15 16 2 C -0.12 -1.35 5.32 -26.73 -0.14 -1.49 16 3 C -0.07 -0.81 1.94 -88.96 -0.17 -0.98 16 4 H 0.09 1.16 7.43 -51.93 -0.39 0.78 16 5 C -0.12 -1.04 5.69 -25.61 -0.15 -1.19 16 6 C -0.12 -0.97 6.80 -25.62 -0.17 -1.14 16 7 C -0.11 -1.02 6.26 -25.09 -0.16 -1.18 16 8 C -0.11 -1.30 2.71 -89.80 -0.24 -1.54 16 9 H 0.10 1.06 8.06 -51.93 -0.42 0.64 16 10 C 0.52 8.07 7.13 -10.99 -0.08 7.99 16 11 O -0.54 -10.70 15.72 5.55 0.09 -10.62 16 12 N -0.72 -10.86 5.56 -60.29 -0.33 -11.20 16 13 C 0.15 2.75 5.51 -4.04 -0.02 2.73 16 14 C -0.16 -2.89 4.17 -89.97 -0.37 -3.27 16 15 C 0.13 2.57 8.25 -8.50 -0.07 2.50 16 16 N -0.61 -15.65 3.62 -184.58 -0.67 -16.32 16 17 C -0.22 -6.19 10.75 -15.06 -0.16 -6.36 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.55 11.50 55.49 0.64 -26.91 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.16 3.64 6.94 -8.36 -0.06 3.58 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.45 7.62 -51.93 -0.40 0.05 16 29 H 0.06 0.61 7.95 -51.93 -0.41 0.19 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.53 7.71 -51.93 -0.40 0.13 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 4.85 8.47 -40.82 -0.35 4.50 16 38 H 0.08 1.87 7.93 -51.93 -0.41 1.46 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.89 7.09 -51.93 -0.37 1.52 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -32.73 358.16 -9.61 -42.34 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.17 Total: 1.56 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.53 Total: -1.79 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.37 Total: -54.43 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.73 -9.61 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031953473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.271 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds