Wall clock time and date at job start Tue Mar 31 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47325 * 2 1 4 4 H 1.09003 * 110.43046 * 52.45958 * 3 2 1 5 5 C 1.54271 * 110.48382 * 289.77910 * 3 2 1 6 6 C 1.53872 * 106.59578 * 217.71135 * 5 3 2 7 7 C 1.54264 * 106.59991 * 0.02562 * 6 5 3 8 8 C 1.54882 * 110.48644 * 175.00502 * 3 2 1 9 9 H 1.09004 * 110.75802 * 38.11919 * 8 3 2 10 10 C 1.50699 * 110.75678 * 274.93758 * 8 3 2 11 11 O 1.21287 * 119.99828 * 359.97438 * 10 8 3 12 12 N 1.34778 * 120.00541 * 180.02562 * 10 8 3 13 13 C 1.46497 * 120.00488 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47258 * 180.02562 * 13 12 10 15 15 C 1.53495 * 114.20770 * 175.00180 * 14 13 12 16 16 N 1.47068 * 87.98832 * 87.71390 * 15 14 13 17 17 C 1.36931 * 136.05648 * 207.08648 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72253 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 C 1.47071 * 87.88415 * 27.34050 * 16 15 14 26 26 H 1.08993 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46679 * 299.99808 * 1 2 3 28 28 H 1.09003 * 109.47310 * 59.99397 * 1 2 3 29 29 H 1.09004 * 109.46679 * 240.00192 * 2 1 3 30 30 H 1.08996 * 109.47462 * 120.00213 * 2 1 3 31 31 H 1.08994 * 110.03525 * 336.99485 * 5 3 2 32 32 H 1.09000 * 110.02868 * 98.42969 * 5 3 2 33 33 H 1.08998 * 110.03266 * 119.28718 * 6 5 3 34 34 H 1.09007 * 110.03246 * 240.67198 * 6 5 3 35 35 H 1.08998 * 110.49115 * 264.93362 * 7 6 5 36 36 H 1.09003 * 110.48676 * 142.29139 * 7 6 5 37 37 H 0.97006 * 119.99389 * 359.97438 * 12 10 8 38 38 H 1.09002 * 109.46834 * 59.99604 * 13 12 10 39 39 H 1.09001 * 109.46529 * 300.00176 * 13 12 10 40 40 H 1.08999 * 113.28271 * 41.93034 * 14 13 12 41 41 H 1.09004 * 113.46737 * 332.93437 * 15 14 13 42 42 H 1.08995 * 113.47006 * 202.49735 * 15 14 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 44 44 H 1.08998 * 113.46338 * 87.43811 * 25 16 15 45 45 H 1.08993 * 113.47050 * 217.87717 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0087 0.8099 5 6 1.7590 2.1145 -1.3599 6 6 2.9737 3.0073 -1.6684 7 6 3.9508 2.8461 -0.4856 8 6 3.5835 1.4718 0.1263 9 1 4.0333 0.6594 -0.4445 10 6 4.0025 1.4014 1.5722 11 8 3.1623 1.3337 2.4444 12 7 5.3106 1.4146 1.8963 13 6 5.7179 1.3468 3.3019 14 6 7.2448 1.3787 3.3926 15 6 7.7891 1.4348 4.8267 16 7 7.7439 -0.0350 4.8461 17 6 7.6084 -1.0048 5.8033 18 1 7.4999 -0.7274 6.8414 19 6 7.6042 -2.3442 5.4386 20 7 7.7359 -2.6821 4.1734 21 14 7.4116 -3.6669 6.7436 22 1 5.9702 -3.9701 6.9320 23 1 8.1237 -4.8962 6.3112 24 1 7.9879 -3.1857 8.0249 25 6 7.9148 -0.0052 3.3856 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6464 1.3564 -2.1349 32 1 0.8559 2.7216 -1.2968 33 1 3.4506 2.6824 -2.5931 34 1 2.6600 4.0475 -1.7558 35 1 3.7999 3.6408 0.2450 36 1 4.9817 2.8433 -0.8399 37 1 5.9825 1.4691 1.1987 38 1 5.3465 0.4220 3.7435 39 1 5.3042 2.1988 3.8414 40 1 7.7018 2.0977 2.7126 41 1 7.1020 1.8995 5.5339 42 1 8.7992 1.8390 4.8921 43 1 7.7333 -3.6181 3.9187 44 1 8.9582 0.0193 3.0712 45 1 7.3350 -0.7672 2.8650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031953473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:53 Heat of formation + Delta-G solvation = -29.855323 kcal Electronic energy + Delta-G solvation = -22408.613922 eV Core-core repulsion = 19232.796662 eV Total energy + Delta-G solvation = -3175.817261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26027 -40.04210 -38.49385 -35.67268 -34.28274 -33.96779 -31.03139 -29.84025 -28.45245 -27.49583 -26.32689 -24.48572 -23.69289 -22.49072 -21.14858 -20.56638 -20.14191 -18.75222 -18.11649 -17.22515 -16.93964 -16.50511 -16.11436 -15.96325 -15.66178 -15.17116 -14.88408 -14.59112 -14.40589 -14.19878 -13.91296 -13.75378 -13.39139 -13.03919 -12.93626 -12.81962 -12.73040 -12.57834 -12.26933 -12.14911 -11.99713 -11.83798 -11.61546 -11.59379 -11.44163 -11.32406 -11.19915 -11.06895 -10.92149 -10.67776 -10.01363 -8.91162 -7.92304 -5.23950 1.41911 1.44586 1.52253 1.70281 2.26807 2.45755 3.30200 3.48158 3.52324 3.62382 3.69636 3.79250 3.97981 4.16418 4.31647 4.32920 4.50539 4.51167 4.52992 4.60306 4.63306 4.72639 4.75694 4.78697 4.85880 4.88105 4.94535 4.98033 5.07502 5.10036 5.16611 5.22579 5.24106 5.27012 5.33858 5.40538 5.46339 5.51000 5.53457 5.59847 5.64975 5.94981 6.65325 6.90883 7.34189 7.59739 8.60748 9.25224 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.003902 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.265389 B = 7173.618710 C = 8054.328136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.074 4.074 4 H 0.059 0.941 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.107 4.107 8 C -0.109 4.109 9 H 0.115 0.885 10 C 0.511 3.489 11 O -0.591 6.591 12 N -0.712 5.712 13 C 0.163 3.837 14 C -0.123 4.123 15 C 0.124 3.876 16 N -0.644 5.644 17 C -0.228 4.228 18 H 0.082 0.918 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.974 3.026 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.267 1.267 25 C 0.155 3.845 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.414 0.586 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.247 0.753 44 H 0.025 0.975 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 13.029 -15.770 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.093 4.093 4 H 0.078 0.922 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.145 4.145 8 C -0.130 4.130 9 H 0.133 0.867 10 C 0.299 3.701 11 O -0.471 6.471 12 N -0.363 5.363 13 C 0.038 3.962 14 C -0.143 4.143 15 C -0.002 4.002 16 N -0.371 5.371 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.260 4.260 20 N -0.600 5.600 21 Si 0.803 3.197 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.192 1.192 25 C 0.029 3.971 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.251 0.749 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.972 12.669 -14.990 21.580 hybrid contribution 0.457 -1.311 0.972 1.695 sum -8.516 11.358 -14.018 19.951 Atomic orbital electron populations 1.21722 0.94932 1.01735 1.01934 1.21549 0.96906 0.96043 1.00981 1.21850 0.92422 0.96410 0.98572 0.92221 1.22212 0.98788 0.98983 0.95193 1.22116 0.95060 1.00413 0.97961 1.22335 1.01309 0.93242 0.97644 1.22448 0.98311 1.01942 0.90311 0.86698 1.21268 0.81918 0.74549 0.92365 1.90666 1.52365 1.51569 1.52533 1.45923 1.07583 1.74115 1.08704 1.20626 0.93448 0.99877 0.82222 1.23042 0.93569 0.98746 0.98897 1.22584 0.98517 0.84644 0.94416 1.45984 1.84599 1.01877 1.04618 1.19312 1.41638 0.86138 0.88578 0.90063 1.25577 1.03091 0.98904 0.98416 1.69996 1.57861 1.15927 1.16254 0.85137 0.77288 0.78639 0.78666 1.21724 1.21784 1.19181 1.22194 0.96131 0.93537 0.85254 0.92643 0.94013 0.90889 0.90627 0.95175 0.90349 0.91227 0.89905 0.90738 0.92181 0.88776 0.74907 0.95551 0.91840 0.86082 0.93417 0.92346 0.94418 0.95728 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.79 71.98 0.70 -2.22 16 2 C -0.12 -2.72 5.32 30.60 0.16 -2.55 16 3 C -0.07 -1.62 1.94 -9.72 -0.02 -1.64 16 4 H 0.06 1.65 7.43 -2.39 -0.02 1.63 16 5 C -0.11 -1.67 5.69 31.32 0.18 -1.50 16 6 C -0.12 -1.43 6.80 31.32 0.21 -1.22 16 7 C -0.11 -1.66 6.26 31.66 0.20 -1.46 16 8 C -0.11 -2.37 2.71 -10.26 -0.03 -2.40 16 9 H 0.12 2.20 8.06 -2.38 -0.02 2.18 16 10 C 0.51 16.11 7.13 87.66 0.62 16.73 16 11 O -0.59 -24.47 15.72 -3.05 -0.05 -24.52 16 12 N -0.71 -20.93 5.56 -463.06 -2.57 -23.50 16 13 C 0.16 5.92 5.51 86.38 0.48 6.40 16 14 C -0.12 -4.20 4.17 -10.37 -0.04 -4.25 16 15 C 0.12 4.83 8.25 83.18 0.69 5.52 16 16 N -0.64 -33.39 3.62 -737.88 -2.67 -36.07 16 17 C -0.23 -13.23 10.75 84.04 0.90 -12.32 16 18 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 19 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 20 N -0.95 -58.77 11.50 21.65 0.25 -58.52 16 21 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 C 0.15 7.13 6.94 83.27 0.58 7.70 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 1.14 7.62 -2.39 -0.02 1.13 16 29 H 0.08 1.47 7.95 -2.38 -0.02 1.45 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.98 7.71 -2.39 -0.02 0.96 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.06 1.06 8.04 -2.39 -0.02 1.04 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 9.21 8.47 -92.70 -0.79 8.42 16 38 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 44 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.04 1.99 7.09 -2.39 -0.02 1.98 16 Total: -1.00 -75.28 358.16 2.25 -73.04 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.16 Total: 16.82 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.10 Total: 3.34 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -5.00 Total: -118.09 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.28 2.25 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031953473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.181 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds