Wall clock time and date at job start Tue Mar 31 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 H 1.09003 * 110.05301 * 53.28679 * 3 2 1 5 5 C 1.54265 * 110.03049 * 291.86840 * 3 2 1 6 6 C 1.54883 * 104.19614 * 217.10360 * 5 3 2 7 7 C 1.54968 * 102.77600 * 37.91928 * 6 5 3 8 8 C 1.53872 * 110.03037 * 174.70240 * 3 2 1 9 9 H 1.09005 * 110.02597 * 238.61588 * 8 3 2 10 10 C 1.50695 * 110.03556 * 0.02562 * 8 3 2 11 11 O 1.21279 * 120.00141 * 86.40244 * 10 8 3 12 12 N 1.34783 * 119.99833 * 266.41018 * 10 8 3 13 13 C 1.46501 * 119.99473 * 179.97438 * 12 10 8 14 14 C 1.53009 * 109.46705 * 180.02562 * 13 12 10 15 15 C 1.53939 * 113.84117 * 86.35177 * 14 13 12 16 16 N 1.47580 * 86.11903 * 90.74959 * 15 14 13 17 17 C 1.36936 * 134.49734 * 204.64011 * 16 15 14 18 18 H 1.07997 * 119.99985 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99676 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00409 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99935 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46996 * 119.99935 * 21 19 17 24 24 H 1.48500 * 109.47014 * 240.00303 * 21 19 17 25 25 C 1.47588 * 91.01136 * 24.63917 * 16 15 14 26 26 H 1.09001 * 109.46589 * 59.99764 * 1 2 3 27 27 H 1.08992 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46820 * 300.00362 * 1 2 3 29 29 H 1.08994 * 109.47200 * 239.99836 * 2 1 3 30 30 H 1.09004 * 109.46813 * 119.99751 * 2 1 3 31 31 H 1.08998 * 110.48872 * 335.78625 * 5 3 2 32 32 H 1.09001 * 110.48494 * 98.42575 * 5 3 2 33 33 H 1.08996 * 110.75732 * 156.25573 * 6 5 3 34 34 H 1.09004 * 110.75826 * 279.44612 * 6 5 3 35 35 H 1.09000 * 110.53082 * 203.43190 * 7 6 5 36 36 H 1.08996 * 110.47678 * 80.76385 * 7 6 5 37 37 H 0.96993 * 120.00098 * 359.97438 * 12 10 8 38 38 H 1.08996 * 109.47468 * 60.00204 * 13 12 10 39 39 H 1.08998 * 109.47234 * 299.99655 * 13 12 10 40 40 H 1.09004 * 112.94178 * 314.66325 * 14 13 12 41 41 H 1.09001 * 113.77189 * 205.05686 * 15 14 13 42 42 H 1.09002 * 113.76970 * 336.45440 * 15 14 13 43 43 H 0.96996 * 120.00460 * 180.02562 * 20 19 17 44 44 H 1.08992 * 113.77144 * 221.05780 * 25 16 15 45 45 H 1.09004 * 113.86649 * 89.67582 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5876 1.9990 0.8208 5 6 1.7073 2.1207 -1.3450 6 6 2.9370 3.0172 -1.6330 7 6 4.1191 2.1480 -1.1345 8 6 3.5729 1.4596 0.1335 9 1 3.8642 2.0237 1.0196 10 6 4.0992 0.0503 0.2224 11 8 4.3407 -0.5719 -0.7902 12 7 4.3012 -0.5188 1.4274 13 6 4.8123 -1.8891 1.5137 14 6 4.9488 -2.2907 2.9838 15 6 3.6577 -2.8651 3.5945 16 7 4.1600 -4.1842 3.1638 17 6 3.5717 -5.3832 2.8612 18 1 4.1809 -6.2235 2.5627 19 6 2.1924 -5.5184 2.9383 20 7 1.4499 -4.4942 3.3016 21 14 1.3897 -7.1538 2.5249 22 1 2.4361 -8.1370 2.1461 23 1 0.6457 -7.6533 3.7090 24 1 0.4492 -6.9708 1.3903 25 6 5.5513 -3.6922 3.1900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5877 1.3736 -2.1297 32 1 0.8061 2.7270 -1.2539 33 1 3.0278 3.2172 -2.7006 34 1 2.8758 3.9491 -1.0707 35 1 4.9771 2.7739 -0.8892 36 1 4.3896 1.4055 -1.8852 37 1 4.1084 -0.0211 2.2372 38 1 5.7872 -1.9445 1.0295 39 1 4.1198 -2.5672 1.0151 40 1 5.4168 -1.5178 3.5937 41 1 3.5948 -2.7508 4.6766 42 1 2.7503 -2.5509 3.0788 43 1 0.4861 -4.5887 3.3558 44 1 6.1556 -4.0384 2.3516 45 1 6.0463 -3.8204 4.1527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031953474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:58 Heat of formation + Delta-G solvation = -8.325022 kcal Electronic energy + Delta-G solvation = -22988.540518 eV Core-core repulsion = 19813.656881 eV Total energy + Delta-G solvation = -3174.883637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30906 -38.30356 -37.14568 -34.15464 -33.01193 -32.12461 -29.81427 -28.21147 -27.53532 -25.74072 -24.77677 -22.84204 -22.35658 -21.26984 -20.57201 -19.40549 -18.24144 -16.77167 -16.60585 -16.07899 -15.60589 -15.05710 -14.77291 -14.59615 -14.24473 -13.86261 -13.70249 -13.25320 -13.11437 -12.69137 -12.56321 -12.26835 -11.90405 -11.59681 -11.39056 -11.20448 -11.10467 -11.04694 -10.99048 -10.81607 -10.70646 -10.64728 -10.48148 -10.44216 -10.31713 -9.89069 -9.71162 -9.47560 -9.33080 -8.77663 -8.58767 -6.84912 -5.74129 -3.05817 2.95857 3.40950 3.46607 3.48736 3.51715 4.44740 4.48608 4.55218 4.67772 5.13113 5.19880 5.24352 5.26865 5.37758 5.38824 5.41610 5.43146 5.53288 5.57580 5.64327 5.65580 5.75656 5.83144 5.87988 6.01557 6.03362 6.07709 6.17576 6.19747 6.33145 6.35581 6.36126 6.42420 6.53151 6.57477 6.65805 6.73210 6.87648 7.21214 7.33589 7.59271 7.87190 8.01341 8.57644 9.07864 9.74113 10.62797 11.42966 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.004719 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.299655 B = 5931.603910 C = 6845.061003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.111 4.111 9 H 0.087 0.913 10 C 0.523 3.477 11 O -0.544 6.544 12 N -0.724 5.724 13 C 0.149 3.851 14 C -0.155 4.155 15 C 0.166 3.834 16 N -0.610 5.610 17 C -0.221 4.221 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.126 3.874 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.397 0.603 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.252 0.748 44 H 0.045 0.955 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.815 16.695 -4.906 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.150 4.150 8 C -0.133 4.133 9 H 0.105 0.895 10 C 0.309 3.691 11 O -0.422 6.422 12 N -0.374 5.374 13 C 0.026 3.974 14 C -0.175 4.175 15 C 0.041 3.959 16 N -0.337 5.337 17 C -0.349 4.349 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.001 4.001 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.231 0.769 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.735 15.981 -5.679 17.179 hybrid contribution -0.589 -0.779 0.582 1.137 sum 2.146 15.202 -5.096 16.176 Atomic orbital electron populations 1.21721 0.95694 1.01938 1.01046 1.21848 0.96298 0.95223 1.03540 1.21716 0.92113 0.97186 0.98365 0.90418 1.22449 0.97598 0.98484 0.96961 1.22487 0.94862 0.97912 1.00808 1.22368 0.97477 0.98730 0.96471 1.22042 0.96941 0.93701 1.00588 0.89505 1.20335 0.76906 0.88454 0.83401 1.90668 1.51755 1.64602 1.35177 1.46131 1.66876 1.16450 1.07988 1.21035 0.98950 0.81575 0.95867 1.23448 1.01713 0.97176 0.95161 1.22305 0.94173 0.83759 0.95700 1.45998 1.00246 1.09311 1.78099 1.19070 0.89977 0.87719 1.38139 0.90296 1.24738 0.95938 0.97695 1.01939 1.69813 1.04344 1.29103 1.53548 0.86096 0.79370 0.83073 0.77551 1.20475 1.21816 1.21716 1.22522 0.89576 0.89967 0.97993 0.93143 0.92489 0.92986 0.91080 0.90948 0.91177 0.91682 0.91540 0.91655 0.91687 0.89600 0.76940 0.92504 0.90133 0.91670 0.95738 0.90663 0.93813 0.93708 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.77 37.16 0.36 -1.56 16 2 C -0.13 -1.90 4.12 -26.72 -0.11 -2.01 16 3 C -0.07 -0.86 2.93 -89.50 -0.26 -1.12 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.12 -1.20 5.55 -25.08 -0.14 -1.34 16 6 C -0.12 -1.13 6.91 -24.70 -0.17 -1.30 16 7 C -0.11 -1.23 6.32 -25.03 -0.16 -1.39 16 8 C -0.11 -1.30 3.29 -90.66 -0.30 -1.60 16 9 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 10 C 0.52 8.08 4.68 -10.99 -0.05 8.02 16 11 O -0.54 -10.56 15.03 5.56 0.08 -10.47 16 12 N -0.72 -10.81 5.00 -60.29 -0.30 -11.11 16 13 C 0.15 2.66 5.43 -4.04 -0.02 2.64 16 14 C -0.16 -2.78 3.99 -89.69 -0.36 -3.13 16 15 C 0.17 3.78 7.03 -2.98 -0.02 3.76 16 16 N -0.61 -15.52 3.58 -177.91 -0.64 -16.16 16 17 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.24 11.38 55.49 0.63 -26.61 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.13 2.54 8.51 -2.97 -0.03 2.52 16 26 H 0.05 0.58 7.52 -51.93 -0.39 0.19 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.19 7.12 -51.93 -0.37 0.82 16 30 H 0.07 1.20 6.79 -51.93 -0.35 0.84 16 31 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.14 6.88 -51.93 -0.36 0.79 16 37 H 0.40 4.90 8.47 -40.82 -0.35 4.55 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.80 7.98 -51.93 -0.41 1.38 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.90 7.11 -51.93 -0.37 1.53 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -32.18 352.17 -9.49 -41.67 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.04 Total: 3.13 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.51 Total: -3.22 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.31 Total: -53.88 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.18 -9.49 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031953474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.345 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds