Wall clock time and date at job start Tue Mar 31 2020 02:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 H 1.09003 * 110.05301 * 53.28679 * 3 2 1 5 5 C 1.54265 * 110.03049 * 291.86840 * 3 2 1 6 6 C 1.54883 * 104.19614 * 217.10360 * 5 3 2 7 7 C 1.54968 * 102.77600 * 37.91928 * 6 5 3 8 8 C 1.53872 * 110.03037 * 174.70240 * 3 2 1 9 9 H 1.09005 * 110.02597 * 238.61588 * 8 3 2 10 10 C 1.50695 * 110.03556 * 0.02562 * 8 3 2 11 11 O 1.21279 * 120.00141 * 86.40244 * 10 8 3 12 12 N 1.34783 * 119.99833 * 266.41018 * 10 8 3 13 13 C 1.46501 * 119.99473 * 179.97438 * 12 10 8 14 14 C 1.53009 * 109.46705 * 180.02562 * 13 12 10 15 15 C 1.53939 * 113.84117 * 86.35177 * 14 13 12 16 16 N 1.47580 * 86.11903 * 90.74959 * 15 14 13 17 17 C 1.36936 * 134.49734 * 204.64011 * 16 15 14 18 18 H 1.07997 * 119.99985 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99676 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00409 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99935 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46996 * 119.99935 * 21 19 17 24 24 H 1.48500 * 109.47014 * 240.00303 * 21 19 17 25 25 C 1.47588 * 91.01136 * 24.63917 * 16 15 14 26 26 H 1.09001 * 109.46589 * 59.99764 * 1 2 3 27 27 H 1.08992 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46820 * 300.00362 * 1 2 3 29 29 H 1.08994 * 109.47200 * 239.99836 * 2 1 3 30 30 H 1.09004 * 109.46813 * 119.99751 * 2 1 3 31 31 H 1.08998 * 110.48872 * 335.78625 * 5 3 2 32 32 H 1.09001 * 110.48494 * 98.42575 * 5 3 2 33 33 H 1.08996 * 110.75732 * 156.25573 * 6 5 3 34 34 H 1.09004 * 110.75826 * 279.44612 * 6 5 3 35 35 H 1.09000 * 110.53082 * 203.43190 * 7 6 5 36 36 H 1.08996 * 110.47678 * 80.76385 * 7 6 5 37 37 H 0.96993 * 120.00098 * 359.97438 * 12 10 8 38 38 H 1.08996 * 109.47468 * 60.00204 * 13 12 10 39 39 H 1.08998 * 109.47234 * 299.99655 * 13 12 10 40 40 H 1.09004 * 112.94178 * 314.66325 * 14 13 12 41 41 H 1.09001 * 113.77189 * 205.05686 * 15 14 13 42 42 H 1.09002 * 113.76970 * 336.45440 * 15 14 13 43 43 H 0.96996 * 120.00460 * 180.02562 * 20 19 17 44 44 H 1.08992 * 113.77144 * 221.05780 * 25 16 15 45 45 H 1.09004 * 113.86649 * 89.67582 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5876 1.9990 0.8208 5 6 1.7073 2.1207 -1.3450 6 6 2.9370 3.0172 -1.6330 7 6 4.1191 2.1480 -1.1345 8 6 3.5729 1.4596 0.1335 9 1 3.8642 2.0237 1.0196 10 6 4.0992 0.0503 0.2224 11 8 4.3407 -0.5719 -0.7902 12 7 4.3012 -0.5188 1.4274 13 6 4.8123 -1.8891 1.5137 14 6 4.9488 -2.2907 2.9838 15 6 3.6577 -2.8651 3.5945 16 7 4.1600 -4.1842 3.1638 17 6 3.5717 -5.3832 2.8612 18 1 4.1809 -6.2235 2.5627 19 6 2.1924 -5.5184 2.9383 20 7 1.4499 -4.4942 3.3016 21 14 1.3897 -7.1538 2.5249 22 1 2.4361 -8.1370 2.1461 23 1 0.6457 -7.6533 3.7090 24 1 0.4492 -6.9708 1.3903 25 6 5.5513 -3.6922 3.1900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5877 1.3736 -2.1297 32 1 0.8061 2.7270 -1.2539 33 1 3.0278 3.2172 -2.7006 34 1 2.8758 3.9491 -1.0707 35 1 4.9771 2.7739 -0.8892 36 1 4.3896 1.4055 -1.8852 37 1 4.1084 -0.0211 2.2372 38 1 5.7872 -1.9445 1.0295 39 1 4.1198 -2.5672 1.0151 40 1 5.4168 -1.5178 3.5937 41 1 3.5948 -2.7508 4.6766 42 1 2.7503 -2.5509 3.0788 43 1 0.4861 -4.5887 3.3558 44 1 6.1556 -4.0384 2.3516 45 1 6.0463 -3.8204 4.1527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031953474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:57 Heat of formation + Delta-G solvation = -28.609681 kcal Electronic energy + Delta-G solvation = -22989.420126 eV Core-core repulsion = 19813.656881 eV Total energy + Delta-G solvation = -3175.763245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48234 -39.91299 -38.32321 -35.62575 -34.19017 -34.01862 -31.04594 -29.81027 -28.48057 -27.41682 -26.52309 -24.34549 -23.74703 -22.46334 -21.44654 -20.82280 -19.65583 -18.73672 -17.73928 -17.27019 -17.02534 -16.76694 -16.19045 -15.77884 -15.68113 -15.31917 -15.10728 -14.55916 -14.40083 -14.22209 -14.02969 -13.40715 -13.37553 -12.99449 -12.94677 -12.87141 -12.53465 -12.43015 -12.24786 -12.21974 -11.85051 -11.83777 -11.75795 -11.53205 -11.46870 -11.44297 -11.33260 -11.26547 -10.89901 -10.63882 -9.97716 -8.89072 -7.90865 -5.22120 1.41357 1.42758 1.52150 1.72849 2.28241 2.45976 3.30437 3.44076 3.53193 3.65953 3.70089 3.77706 3.98416 4.13708 4.20877 4.39695 4.41738 4.51329 4.55550 4.60786 4.63546 4.69090 4.77572 4.77960 4.81946 4.86751 4.89414 5.00953 5.07080 5.10007 5.16443 5.18123 5.23506 5.26053 5.29883 5.36335 5.44132 5.49713 5.56002 5.58490 5.65659 5.96844 6.67477 6.93747 7.36650 7.61859 8.57776 9.25868 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.004719 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.299655 B = 5931.603910 C = 6845.061003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C -0.071 4.071 4 H 0.104 0.896 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.106 4.106 9 H 0.123 0.877 10 C 0.518 3.482 11 O -0.591 6.591 12 N -0.715 5.715 13 C 0.161 3.839 14 C -0.119 4.119 15 C 0.163 3.837 16 N -0.643 5.643 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.296 1.296 25 C 0.123 3.877 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.413 0.587 38 H 0.064 0.936 39 H 0.026 0.974 40 H 0.114 0.886 41 H 0.022 0.978 42 H 0.041 0.959 43 H 0.246 0.754 44 H 0.051 0.949 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 19.234 -4.216 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.089 4.089 4 H 0.123 0.877 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.128 4.128 9 H 0.141 0.859 10 C 0.307 3.693 11 O -0.472 6.472 12 N -0.366 5.366 13 C 0.037 3.963 14 C -0.139 4.139 15 C 0.038 3.962 16 N -0.370 5.370 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.223 1.223 25 C -0.002 4.002 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.132 0.868 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.581 18.542 -4.962 19.526 hybrid contribution -0.794 -1.598 0.344 1.817 sum 2.788 16.944 -4.618 17.782 Atomic orbital electron populations 1.21696 0.94667 1.00886 1.02763 1.21756 0.97247 0.97158 1.00409 1.21763 0.91936 0.94992 1.00237 0.87747 1.22458 0.99301 0.98395 0.95398 1.22479 0.92887 0.98132 1.01636 1.22379 0.99139 0.98458 0.95224 1.22166 0.96872 0.91068 1.02657 0.85902 1.21135 0.75768 0.89859 0.82546 1.90649 1.53617 1.66134 1.36775 1.46007 1.66491 1.15221 1.08899 1.20673 0.97821 0.82309 0.95507 1.23145 0.98232 0.97486 0.95010 1.22242 0.95126 0.83536 0.95285 1.46380 1.03112 1.09197 1.78333 1.19422 0.90490 0.88946 1.37241 0.90348 1.25509 0.96600 1.00862 1.02805 1.69984 1.04010 1.30772 1.55103 0.85132 0.78366 0.79741 0.76896 1.19121 1.21621 1.22315 1.22767 0.87529 0.90609 0.99262 0.91205 0.94986 0.91356 0.94615 0.93717 0.93333 0.89496 0.90947 0.89046 0.89618 0.92866 0.75047 0.91763 0.95576 0.86793 0.95994 0.94058 0.94470 0.93061 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.77 71.98 0.70 -3.08 16 2 C -0.13 -3.81 4.12 30.60 0.13 -3.69 16 3 C -0.07 -1.48 2.93 -10.07 -0.03 -1.51 16 4 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.12 -2.16 5.55 31.67 0.18 -1.98 16 6 C -0.11 -1.73 6.91 31.91 0.22 -1.51 16 7 C -0.11 -2.27 6.32 31.70 0.20 -2.07 16 8 C -0.11 -2.26 3.29 -10.82 -0.04 -2.30 16 9 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 10 C 0.52 16.03 4.68 87.65 0.41 16.44 16 11 O -0.59 -24.00 15.03 -3.03 -0.05 -24.04 16 12 N -0.71 -20.94 5.00 -463.05 -2.31 -23.25 16 13 C 0.16 5.81 5.43 86.38 0.47 6.28 16 14 C -0.12 -4.10 3.99 -10.13 -0.04 -4.14 16 15 C 0.16 7.53 7.03 86.48 0.61 8.13 16 16 N -0.64 -33.15 3.58 -716.80 -2.57 -35.72 16 17 C -0.23 -13.42 10.70 84.03 0.90 -12.52 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 20 N -0.95 -58.21 11.38 21.65 0.25 -57.96 16 21 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 25 C 0.12 4.81 8.51 86.48 0.74 5.55 16 26 H 0.07 1.55 7.52 -2.39 -0.02 1.53 16 27 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.29 7.12 -2.39 -0.02 1.27 16 30 H 0.04 1.55 6.79 -2.39 -0.02 1.54 16 31 H 0.05 1.09 7.75 -2.39 -0.02 1.08 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.42 6.88 -2.39 -0.02 1.41 16 37 H 0.41 9.35 8.47 -92.71 -0.79 8.57 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.03 1.23 7.98 -2.39 -0.02 1.21 16 40 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 41 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.04 2.17 7.11 -2.39 -0.02 2.16 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 45 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -74.81 352.17 2.43 -72.38 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.17 Total: 18.87 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.91 Total: 0.29 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -4.63 Total: -116.94 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -74.81 2.43 -72.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031953474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.775 kcal (2) G-P(sol) polarization free energy of solvation -74.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds