Wall clock time and date at job start Tue Mar 31 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 H 1.09001 * 110.53587 * 307.61204 * 3 2 1 5 5 C 1.54887 * 110.48548 * 70.22398 * 3 2 1 6 6 C 1.54893 * 102.74533 * 156.62347 * 5 3 2 7 7 C 1.54266 * 104.19500 * 322.05712 * 6 5 3 8 8 C 1.53872 * 106.60044 * 23.61099 * 7 6 5 9 9 H 1.09003 * 110.03622 * 240.71485 * 8 7 6 10 10 C 1.50699 * 110.03502 * 119.28320 * 8 7 6 11 11 O 1.21279 * 120.00093 * 242.83701 * 10 8 7 12 12 N 1.34782 * 119.99944 * 62.83425 * 10 8 7 13 13 C 1.46490 * 120.00015 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46962 * 179.97438 * 13 12 10 15 15 C 1.53949 * 113.74213 * 273.73974 * 14 13 12 16 16 N 1.47812 * 86.03514 * 222.08592 * 15 14 13 17 17 C 1.36935 * 134.45562 * 204.64790 * 16 15 14 18 18 H 1.08000 * 120.00030 * 179.86656 * 17 16 15 19 19 C 1.38814 * 120.00153 * 359.86564 * 17 16 15 20 20 N 1.31623 * 119.99598 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00341 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47197 * 59.99930 * 21 19 17 23 23 H 1.48498 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47131 * 299.99602 * 21 19 17 25 25 C 1.47579 * 91.05278 * 24.54789 * 16 15 14 26 26 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46956 * 300.00366 * 1 2 3 28 28 H 1.08996 * 109.47406 * 59.99900 * 1 2 3 29 29 H 1.09005 * 109.46956 * 239.99634 * 2 1 3 30 30 H 1.08994 * 109.46898 * 120.00078 * 2 1 3 31 31 H 1.09001 * 110.75744 * 274.93249 * 5 3 2 32 32 H 1.09000 * 110.75698 * 38.31067 * 5 3 2 33 33 H 1.09002 * 110.48578 * 203.38190 * 6 5 3 34 34 H 1.08998 * 110.60430 * 80.79077 * 6 5 3 35 35 H 1.09002 * 110.02957 * 264.32709 * 7 6 5 36 36 H 1.09000 * 110.07144 * 142.92082 * 7 6 5 37 37 H 0.96999 * 119.99473 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.47564 * 299.99636 * 13 12 10 39 39 H 1.09003 * 109.47607 * 60.00067 * 13 12 10 40 40 H 1.08998 * 112.94082 * 45.33671 * 14 13 12 41 41 H 1.09001 * 113.76601 * 336.34988 * 15 14 13 42 42 H 1.08996 * 113.76572 * 107.74481 * 15 14 13 43 43 H 0.96998 * 119.99775 * 180.02562 * 20 19 17 44 44 H 1.08996 * 113.77109 * 221.14829 * 25 16 15 45 45 H 1.09005 * 113.76718 * 89.75809 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0107 -0.8086 5 6 1.7579 2.1172 1.3653 6 6 2.8153 3.2481 1.4127 7 6 4.0702 2.6196 0.7722 8 6 3.5773 1.4716 -0.1260 9 1 3.9978 0.5250 0.2134 10 6 3.9731 1.7294 -1.5571 11 8 3.1190 1.8775 -2.4052 12 7 5.2764 1.7953 -1.8943 13 6 5.6612 2.0464 -3.2853 14 6 7.1870 2.0732 -3.3955 15 6 7.8056 3.4521 -3.1018 16 7 8.6901 3.1870 -4.2559 17 6 9.9305 3.6267 -4.6345 18 1 10.3734 3.2688 -5.5522 19 6 10.6185 4.5325 -3.8389 20 7 10.0788 4.9683 -2.7203 21 14 12.3102 5.1329 -4.3556 22 1 12.2132 5.8132 -5.6721 23 1 12.8273 6.0876 -3.3426 24 1 13.2346 3.9758 -4.4633 25 6 7.7014 2.2567 -4.8348 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.7495 2.5301 1.3912 32 1 1.9091 1.4125 2.1831 33 1 3.0179 3.5380 2.4437 34 1 2.4821 4.1093 0.8336 35 1 4.7299 2.2302 1.5476 36 1 4.5965 3.3628 0.1732 37 1 5.9595 1.6773 -1.2159 38 1 5.2646 1.2545 -3.9207 39 1 5.2572 3.0065 -3.6065 40 1 7.6662 1.2540 -2.8593 41 1 7.1183 4.2838 -3.2568 42 1 8.3299 3.5040 -2.1477 43 1 10.5594 5.6016 -2.1645 44 1 8.1428 1.3563 -5.2618 45 1 6.9836 2.7367 -5.5001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031953477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:06 Heat of formation + Delta-G solvation = -13.582691 kcal Electronic energy + Delta-G solvation = -22133.728991 eV Core-core repulsion = 18958.617365 eV Total energy + Delta-G solvation = -3175.111626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23310 -38.28693 -37.35880 -34.39351 -33.29373 -32.16494 -29.96852 -28.37976 -27.70534 -25.73503 -24.78463 -23.15823 -22.04408 -21.34672 -20.32724 -19.71352 -18.79607 -17.15128 -16.65371 -15.91009 -15.66736 -15.08978 -14.92657 -14.58391 -14.44350 -13.97411 -13.66510 -13.28007 -13.20589 -13.09911 -12.89239 -12.34281 -12.14365 -11.77083 -11.40864 -11.40745 -11.31697 -11.15649 -10.99142 -10.87570 -10.77199 -10.69210 -10.68013 -10.55909 -10.50307 -9.98386 -9.75337 -9.54753 -9.38162 -8.80393 -8.76105 -6.88280 -5.77345 -3.09391 2.81626 3.38426 3.39852 3.43415 3.44451 4.30823 4.44246 4.45080 4.60829 4.95992 5.02882 5.09507 5.17812 5.20229 5.27542 5.32884 5.37093 5.45183 5.46467 5.49108 5.57838 5.66749 5.70840 5.76525 5.81904 5.85081 5.94632 5.97702 6.03915 6.06791 6.13664 6.17878 6.26382 6.36506 6.39927 6.58149 6.66258 6.78639 7.21156 7.35203 7.54200 7.73113 7.97605 8.42006 9.04257 9.70408 10.59763 11.39819 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032860 B = 0.003135 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.896295 B = 8930.385099 C = 9575.893660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.079 4.079 4 H 0.094 0.906 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.111 4.111 9 H 0.097 0.903 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.722 5.722 13 C 0.130 3.870 14 C -0.153 4.153 15 C 0.169 3.831 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.128 3.872 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 -8.794 9.854 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.112 0.888 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.156 4.156 8 C -0.133 4.133 9 H 0.115 0.885 10 C 0.301 3.699 11 O -0.424 6.424 12 N -0.373 5.373 13 C 0.006 3.994 14 C -0.173 4.173 15 C 0.044 3.956 16 N -0.339 5.339 17 C -0.351 4.351 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.001 3.999 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.339 -8.487 9.251 20.605 hybrid contribution 1.370 0.427 -0.054 1.436 sum -14.968 -8.060 9.197 19.329 Atomic orbital electron populations 1.21753 0.95839 1.01285 1.01873 1.21536 0.96027 0.95982 1.01668 1.21988 0.92636 0.96750 0.98390 0.88751 1.22581 0.98830 0.97350 0.96867 1.22340 0.95011 0.98202 1.00613 1.22151 0.98218 0.96798 0.98445 1.22037 0.97995 1.00741 0.92508 0.88533 1.20568 0.82477 0.76217 0.90589 1.90658 1.49927 1.50138 1.51675 1.46082 1.07145 1.72701 1.11361 1.21429 0.95467 1.01038 0.81488 1.23797 0.91688 1.01805 1.00002 1.22341 0.89531 0.89891 0.93817 1.45977 1.13747 1.50791 1.23395 1.18990 0.90146 1.20777 1.05175 0.90322 1.24782 0.98866 0.99547 0.97318 1.69804 1.37957 1.35343 1.13856 0.86194 0.83711 0.78349 0.77473 1.21198 1.21552 1.21087 1.22487 0.90993 0.93518 0.92854 0.93068 0.92784 0.92600 0.91980 0.92218 0.91495 0.91460 0.91478 0.91469 0.90842 0.90896 0.76449 0.92111 0.91554 0.89279 0.95561 0.91002 0.93631 0.93700 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.79 37.16 0.36 -0.87 16 2 C -0.11 -1.05 5.28 -26.73 -0.14 -1.19 16 3 C -0.08 -0.81 2.18 -88.96 -0.19 -1.00 16 4 H 0.09 1.21 6.88 -51.93 -0.36 0.85 16 5 C -0.12 -1.00 5.67 -24.74 -0.14 -1.14 16 6 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 7 C -0.12 -1.14 6.41 -25.61 -0.16 -1.31 16 8 C -0.11 -1.17 2.87 -90.66 -0.26 -1.43 16 9 H 0.10 0.87 7.84 -51.93 -0.41 0.46 16 10 C 0.52 7.26 6.91 -10.98 -0.08 7.18 16 11 O -0.55 -9.65 15.40 5.56 0.09 -9.57 16 12 N -0.72 -9.89 5.45 -60.30 -0.33 -10.22 16 13 C 0.13 2.05 5.51 -4.04 -0.02 2.02 16 14 C -0.15 -2.74 3.93 -89.69 -0.35 -3.09 16 15 C 0.17 3.89 7.08 -2.84 -0.02 3.87 16 16 N -0.61 -15.76 3.70 -177.70 -0.66 -16.42 16 17 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.25 11.39 55.49 0.63 -26.62 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.13 2.60 8.51 -2.97 -0.03 2.58 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.40 7.56 -51.93 -0.39 0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.47 8.02 -51.93 -0.42 0.06 16 31 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.07 0.50 7.97 -51.93 -0.41 0.09 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.81 7.62 -51.93 -0.40 0.42 16 37 H 0.40 4.76 8.47 -40.82 -0.35 4.42 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 42 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -32.23 356.86 -9.48 -41.71 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.11 Total: 1.06 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.46 Total: -2.47 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.35 Total: -53.26 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.23 -9.48 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031953477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.130 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds