Wall clock time and date at job start Tue Mar 31 2020 02:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 H 1.09001 * 110.53587 * 307.61204 * 3 2 1 5 5 C 1.54887 * 110.48548 * 70.22398 * 3 2 1 6 6 C 1.54893 * 102.74533 * 156.62347 * 5 3 2 7 7 C 1.54266 * 104.19500 * 322.05712 * 6 5 3 8 8 C 1.53872 * 106.60044 * 23.61099 * 7 6 5 9 9 H 1.09003 * 110.03622 * 240.71485 * 8 7 6 10 10 C 1.50699 * 110.03502 * 119.28320 * 8 7 6 11 11 O 1.21279 * 120.00093 * 242.83701 * 10 8 7 12 12 N 1.34782 * 119.99944 * 62.83425 * 10 8 7 13 13 C 1.46490 * 120.00015 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46962 * 179.97438 * 13 12 10 15 15 C 1.53949 * 113.74213 * 273.73974 * 14 13 12 16 16 N 1.47812 * 86.03514 * 222.08592 * 15 14 13 17 17 C 1.36935 * 134.45562 * 204.64790 * 16 15 14 18 18 H 1.08000 * 120.00030 * 179.86656 * 17 16 15 19 19 C 1.38814 * 120.00153 * 359.86564 * 17 16 15 20 20 N 1.31623 * 119.99598 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00341 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47197 * 59.99930 * 21 19 17 23 23 H 1.48498 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47131 * 299.99602 * 21 19 17 25 25 C 1.47579 * 91.05278 * 24.54789 * 16 15 14 26 26 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46956 * 300.00366 * 1 2 3 28 28 H 1.08996 * 109.47406 * 59.99900 * 1 2 3 29 29 H 1.09005 * 109.46956 * 239.99634 * 2 1 3 30 30 H 1.08994 * 109.46898 * 120.00078 * 2 1 3 31 31 H 1.09001 * 110.75744 * 274.93249 * 5 3 2 32 32 H 1.09000 * 110.75698 * 38.31067 * 5 3 2 33 33 H 1.09002 * 110.48578 * 203.38190 * 6 5 3 34 34 H 1.08998 * 110.60430 * 80.79077 * 6 5 3 35 35 H 1.09002 * 110.02957 * 264.32709 * 7 6 5 36 36 H 1.09000 * 110.07144 * 142.92082 * 7 6 5 37 37 H 0.96999 * 119.99473 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.47564 * 299.99636 * 13 12 10 39 39 H 1.09003 * 109.47607 * 60.00067 * 13 12 10 40 40 H 1.08998 * 112.94082 * 45.33671 * 14 13 12 41 41 H 1.09001 * 113.76601 * 336.34988 * 15 14 13 42 42 H 1.08996 * 113.76572 * 107.74481 * 15 14 13 43 43 H 0.96998 * 119.99775 * 180.02562 * 20 19 17 44 44 H 1.08996 * 113.77109 * 221.14829 * 25 16 15 45 45 H 1.09005 * 113.76718 * 89.75809 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0107 -0.8086 5 6 1.7579 2.1172 1.3653 6 6 2.8153 3.2481 1.4127 7 6 4.0702 2.6196 0.7722 8 6 3.5773 1.4716 -0.1260 9 1 3.9978 0.5250 0.2134 10 6 3.9731 1.7294 -1.5571 11 8 3.1190 1.8775 -2.4052 12 7 5.2764 1.7953 -1.8943 13 6 5.6612 2.0464 -3.2853 14 6 7.1870 2.0732 -3.3955 15 6 7.8056 3.4521 -3.1018 16 7 8.6901 3.1870 -4.2559 17 6 9.9305 3.6267 -4.6345 18 1 10.3734 3.2688 -5.5522 19 6 10.6185 4.5325 -3.8389 20 7 10.0788 4.9683 -2.7203 21 14 12.3102 5.1329 -4.3556 22 1 12.2132 5.8132 -5.6721 23 1 12.8273 6.0876 -3.3426 24 1 13.2346 3.9758 -4.4633 25 6 7.7014 2.2567 -4.8348 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.7495 2.5301 1.3912 32 1 1.9091 1.4125 2.1831 33 1 3.0179 3.5380 2.4437 34 1 2.4821 4.1093 0.8336 35 1 4.7299 2.2302 1.5476 36 1 4.5965 3.3628 0.1732 37 1 5.9595 1.6773 -1.2159 38 1 5.2646 1.2545 -3.9207 39 1 5.2572 3.0065 -3.6065 40 1 7.6662 1.2540 -2.8593 41 1 7.1183 4.2838 -3.2568 42 1 8.3299 3.5040 -2.1477 43 1 10.5594 5.6016 -2.1645 44 1 8.1428 1.3563 -5.2618 45 1 6.9836 2.7367 -5.5001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031953477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:05 Heat of formation + Delta-G solvation = -33.208848 kcal Electronic energy + Delta-G solvation = -22134.580045 eV Core-core repulsion = 18958.617365 eV Total energy + Delta-G solvation = -3175.962680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29887 -39.84195 -38.44029 -35.74568 -34.26816 -33.92245 -31.16485 -29.83853 -28.44318 -27.39150 -26.55280 -24.23436 -23.47180 -22.34061 -21.27269 -20.88232 -20.11184 -18.77679 -18.11655 -17.13161 -16.98872 -16.53152 -16.18632 -15.71653 -15.53288 -15.31791 -15.06590 -14.57496 -14.33491 -14.09200 -13.97040 -13.79305 -13.30517 -13.12310 -12.86009 -12.80713 -12.61028 -12.54911 -12.25660 -12.13890 -11.86376 -11.85198 -11.64418 -11.61753 -11.47007 -11.38724 -11.27510 -11.22610 -10.87405 -10.65230 -10.02003 -8.93005 -7.91280 -5.24750 1.45011 1.48437 1.54507 1.69309 2.26217 2.47195 3.29195 3.38272 3.50671 3.68267 3.69531 3.83662 4.05999 4.19822 4.27879 4.34965 4.37664 4.48059 4.53660 4.58494 4.69788 4.74163 4.76600 4.77669 4.84511 4.85656 4.88663 5.00119 5.07057 5.08877 5.15285 5.24270 5.26091 5.27080 5.32496 5.43156 5.45411 5.47852 5.53895 5.63011 5.65747 5.93216 6.61877 6.91478 7.29994 7.59880 8.55710 9.25387 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032860 B = 0.003135 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.896295 B = 8930.385099 C = 9575.893660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.062 0.938 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.106 4.106 9 H 0.121 0.879 10 C 0.513 3.487 11 O -0.586 6.586 12 N -0.717 5.717 13 C 0.142 3.858 14 C -0.114 4.114 15 C 0.167 3.833 16 N -0.645 5.645 17 C -0.239 4.239 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.980 3.020 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.274 1.274 25 C 0.125 3.875 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.105 0.895 41 H 0.009 0.991 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.063 0.937 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.141 -10.338 10.964 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.099 4.099 4 H 0.080 0.920 5 C -0.148 4.148 6 C -0.163 4.163 7 C -0.155 4.155 8 C -0.127 4.127 9 H 0.139 0.861 10 C 0.301 3.699 11 O -0.466 6.466 12 N -0.368 5.368 13 C 0.017 3.983 14 C -0.134 4.134 15 C 0.042 3.958 16 N -0.372 5.372 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.200 1.200 25 C 0.000 4.000 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.248 0.752 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.027 0.973 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.428 -10.061 10.357 21.872 hybrid contribution 1.346 0.909 -0.450 1.686 sum -15.082 -9.152 9.907 20.232 Atomic orbital electron populations 1.21747 0.95300 1.01890 1.01724 1.21526 0.96545 0.95097 1.01792 1.21956 0.92153 0.97306 0.98509 0.91985 1.22557 0.98879 0.97227 0.96108 1.22364 0.94819 0.97899 1.01248 1.22179 0.98775 0.96019 0.98544 1.22110 0.98416 1.02193 0.89949 0.86078 1.21237 0.81841 0.75013 0.91836 1.90644 1.50924 1.51885 1.53184 1.46009 1.07647 1.72386 1.10764 1.21142 0.93561 1.00558 0.83030 1.23397 0.92879 0.98901 0.98181 1.22246 0.89112 0.92306 0.92123 1.46405 1.14111 1.51700 1.24969 1.19408 0.91528 1.20573 1.05186 0.89937 1.25639 1.02689 1.00163 0.97569 1.69992 1.39299 1.35962 1.14894 0.85139 0.79375 0.77810 0.76921 1.20626 1.21935 1.19971 1.22693 0.90006 0.93053 0.94259 0.92083 0.91618 0.94093 0.93637 0.90181 0.91043 0.89468 0.89741 0.93034 0.88560 0.92941 0.75164 0.90951 0.93410 0.87701 0.97336 0.93575 0.94236 0.91923 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.79 71.98 0.70 -1.55 16 2 C -0.11 -1.86 5.28 30.60 0.16 -1.70 16 3 C -0.08 -1.55 2.18 -9.72 -0.02 -1.58 16 4 H 0.06 1.62 6.88 -2.39 -0.02 1.61 16 5 C -0.11 -1.60 5.67 31.89 0.18 -1.42 16 6 C -0.13 -2.04 6.83 31.67 0.22 -1.82 16 7 C -0.12 -2.07 6.41 31.32 0.20 -1.87 16 8 C -0.11 -2.06 2.87 -10.82 -0.03 -2.09 16 9 H 0.12 1.81 7.84 -2.39 -0.02 1.79 16 10 C 0.51 14.21 6.91 87.66 0.61 14.81 16 11 O -0.59 -21.02 15.40 -3.03 -0.05 -21.07 16 12 N -0.72 -19.00 5.45 -463.06 -2.52 -21.53 16 13 C 0.14 4.36 5.51 86.38 0.48 4.84 16 14 C -0.11 -3.97 3.93 -10.13 -0.04 -4.01 16 15 C 0.17 7.84 7.08 86.44 0.61 8.45 16 16 N -0.65 -33.30 3.70 -716.12 -2.65 -35.95 16 17 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 20 N -0.95 -57.44 11.39 21.65 0.25 -57.19 16 21 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 25 C 0.13 4.95 8.51 86.49 0.74 5.68 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.83 7.56 -2.38 -0.02 0.81 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.08 1.01 8.02 -2.39 -0.02 0.99 16 31 H 0.07 0.99 8.06 -2.39 -0.02 0.97 16 32 H 0.09 0.96 7.97 -2.39 -0.02 0.95 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.15 7.62 -2.39 -0.02 1.13 16 37 H 0.41 9.19 8.47 -92.71 -0.79 8.41 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.67 7.87 -2.39 -0.02 1.65 16 40 H 0.10 3.38 8.14 -2.39 -0.02 3.37 16 41 H 0.01 0.44 7.92 -2.39 -0.02 0.42 16 42 H 0.05 2.38 7.16 -2.39 -0.02 2.36 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 Total: -1.00 -70.80 356.86 2.39 -68.42 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.16 Total: 17.78 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.17 Total: 1.69 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -4.93 Total: -114.67 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.07 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.80 2.39 -68.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031953477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.208 kcal (2) G-P(sol) polarization free energy of solvation -70.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds