Wall clock time and date at job start Tue Mar 31 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.53002 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.55889 * 29.31331 * 4 3 2 6 6 C 1.52996 * 117.50138 * 243.62296 * 4 3 2 7 7 C 1.53002 * 117.49919 * 174.99472 * 4 3 2 8 8 H 1.08998 * 117.51677 * 0.02562 * 7 4 3 9 9 C 1.50700 * 117.50072 * 214.97997 * 7 4 3 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99675 * 180.26760 * 9 7 4 12 12 C 1.46496 * 120.00345 * 359.72090 * 11 9 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 14 14 H 1.09000 * 110.88922 * 356.11794 * 13 11 9 15 15 C 1.55164 * 111.00424 * 119.99732 * 13 11 9 16 16 C 1.54322 * 102.94194 * 153.57176 * 15 13 11 17 17 N 1.47024 * 107.27238 * 337.81258 * 16 15 13 18 18 C 1.36936 * 125.64553 * 178.96336 * 17 16 15 19 19 H 1.07998 * 120.00046 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00428 * 359.96919 * 18 17 16 21 21 N 1.31625 * 119.99857 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00254 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46987 * 59.99745 * 22 20 18 24 24 H 1.48496 * 109.46911 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46672 * 299.99996 * 22 20 18 26 26 C 1.47420 * 108.70432 * 358.93679 * 17 16 15 27 27 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46836 * 300.00198 * 1 2 3 29 29 H 1.09004 * 109.47037 * 59.99871 * 1 2 3 30 30 H 1.09003 * 109.47217 * 240.00150 * 2 1 3 31 31 H 1.09001 * 109.47521 * 119.99971 * 2 1 3 32 32 H 1.09000 * 109.47498 * 60.00208 * 3 2 1 33 33 H 1.09002 * 109.47008 * 299.99522 * 3 2 1 34 34 H 1.08992 * 117.50251 * 145.02429 * 6 4 3 35 35 H 1.08999 * 117.49564 * 359.97438 * 6 4 3 36 36 H 1.08997 * 109.47115 * 90.00316 * 12 11 9 37 37 H 1.08995 * 109.47364 * 210.00706 * 12 11 9 38 38 H 1.09002 * 109.47090 * 330.00257 * 12 11 9 39 39 H 1.08997 * 110.72047 * 271.93751 * 15 13 11 40 40 H 1.09000 * 110.71492 * 35.03465 * 15 13 11 41 41 H 1.09007 * 109.87971 * 97.22299 * 16 15 13 42 42 H 1.08997 * 109.88371 * 218.38851 * 16 15 13 43 43 H 0.97003 * 119.99949 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.36508 * 265.29838 * 26 17 16 45 45 H 1.08996 * 110.36795 * 142.96855 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2760 2.0456 1.2166 7 6 4.2765 2.7945 -0.1177 8 1 3.6516 3.6841 -0.1955 9 6 5.5697 2.8386 -0.8903 10 8 6.0126 1.8259 -1.3895 11 7 6.2369 4.0023 -1.0214 12 6 5.7020 5.2254 -0.4181 13 6 7.4970 4.0440 -1.7673 14 1 7.7898 3.0454 -2.0917 15 6 7.3970 5.0138 -2.9744 16 6 8.8613 5.4510 -3.1888 17 7 9.5724 5.2321 -1.9207 18 6 10.9014 5.4762 -1.6985 19 1 11.3310 5.2818 -0.7269 20 6 11.6964 5.9733 -2.7220 21 7 11.1728 6.2105 -3.9061 22 14 13.5095 6.3056 -2.4191 23 1 14.1842 5.0440 -2.0212 24 1 14.1314 6.8282 -3.6621 25 1 13.6542 7.3081 -1.3332 26 6 8.6176 4.7068 -0.9278 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2109 1.5850 1.5356 35 1 3.6504 2.4428 2.0160 36 1 6.0877 5.3290 0.5961 37 1 6.0064 6.0869 -1.0124 38 1 4.6137 5.1704 -0.3891 39 1 7.0163 4.4959 -3.8547 40 1 6.7679 5.8698 -2.7301 41 1 9.3158 4.8507 -3.9770 42 1 8.8975 6.5070 -3.4566 43 1 11.7284 6.5576 -4.6214 44 1 8.2104 5.5195 -0.3262 45 1 9.1017 3.9672 -0.2902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033399493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:51 Heat of formation + Delta-G solvation = 5.846355 kcal Electronic energy + Delta-G solvation = -22124.484714 eV Core-core repulsion = 18950.215594 eV Total energy + Delta-G solvation = -3174.269120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15472 -38.00715 -36.76348 -34.75876 -34.06756 -32.08319 -29.27387 -28.00006 -27.44870 -26.59291 -24.80243 -23.55453 -22.17851 -20.83443 -20.12336 -19.98024 -18.61455 -17.30672 -16.94752 -16.09170 -15.42531 -15.20108 -14.67949 -14.51362 -14.27301 -14.00434 -13.52154 -13.10656 -13.02705 -12.76036 -12.49400 -12.45569 -12.29162 -12.18963 -11.87871 -11.69735 -11.54985 -11.26609 -11.06812 -10.94619 -10.83399 -10.75870 -10.36937 -10.28270 -10.13287 -10.10195 -9.81520 -9.70062 -9.50470 -8.61609 -8.31285 -6.84110 -5.70826 -3.05162 2.61729 3.11470 3.41752 3.45756 3.47181 3.73533 4.32604 4.51410 4.59130 4.62910 4.81072 4.90245 4.91628 5.03531 5.25610 5.29924 5.35885 5.42212 5.46611 5.51045 5.55195 5.58166 5.60292 5.65941 5.73944 5.76615 5.78867 5.84244 5.91521 5.97385 6.00712 6.19821 6.22783 6.31838 6.51088 6.59638 6.71605 6.98802 7.54646 7.60042 7.64700 7.82233 8.24787 8.38573 9.21532 9.81489 10.46756 11.40680 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.002941 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.934730 B = 9517.186922 C = 9597.701351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.121 4.121 5 H 0.117 0.883 6 C -0.148 4.148 7 C -0.188 4.188 8 H 0.123 0.877 9 C 0.540 3.460 10 O -0.545 6.545 11 N -0.597 5.597 12 C 0.078 3.922 13 C 0.122 3.878 14 H 0.105 0.895 15 C -0.153 4.153 16 C 0.180 3.820 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.132 3.868 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.022 0.978 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 -6.092 8.953 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.209 4.209 8 H 0.141 0.859 9 C 0.328 3.672 10 O -0.423 6.423 11 N -0.329 5.329 12 C -0.065 4.065 13 C 0.019 3.981 14 H 0.123 0.877 15 C -0.192 4.192 16 C 0.055 3.945 17 N -0.330 5.330 18 C -0.357 4.357 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.005 3.995 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.941 -6.522 8.547 22.655 hybrid contribution 1.000 0.491 0.091 1.118 sum -18.941 -6.031 8.639 21.674 Atomic orbital electron populations 1.21782 0.95941 1.01590 1.01729 1.21505 0.95559 0.96570 1.02392 1.21235 0.92022 0.97305 1.02089 1.22451 0.94521 0.95752 1.01197 0.86481 1.23074 1.03055 1.02127 0.90246 1.22350 0.97976 0.98491 1.02083 0.85945 1.19626 0.84644 0.82977 0.79916 1.90677 1.68743 1.33726 1.49119 1.47730 1.23395 1.08314 1.53442 1.21781 0.98548 0.87652 0.98548 1.22461 0.82270 1.01142 0.92254 0.87668 1.23245 1.00753 0.98171 0.97047 1.21142 0.84838 0.99737 0.88799 1.44382 1.05393 1.75757 1.07468 1.19007 0.82888 1.36914 0.96919 0.90439 1.24820 0.98386 1.01428 0.95790 1.69953 1.34513 1.50467 1.02035 0.86167 0.84574 0.78030 0.76796 1.21124 1.21577 1.21159 1.21733 0.90068 0.95379 0.92339 0.92788 0.92838 0.92747 0.91753 0.91820 0.91714 0.91449 0.88321 0.87965 0.92472 0.90472 0.91416 0.91964 0.92134 0.93309 0.93666 0.93652 0.96017 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.90 5.89 -26.73 -0.16 -1.06 16 3 C -0.09 -0.70 5.50 -26.73 -0.15 -0.85 16 4 C -0.12 -1.24 5.25 -90.62 -0.48 -1.71 16 5 H 0.12 1.44 7.60 -51.92 -0.39 1.04 16 6 C -0.15 -1.42 9.88 -26.73 -0.26 -1.68 16 7 C -0.19 -2.11 5.01 -91.77 -0.46 -2.57 16 8 H 0.12 1.11 6.44 -51.93 -0.33 0.77 16 9 C 0.54 8.54 7.46 -10.98 -0.08 8.46 16 10 O -0.54 -10.74 15.64 5.55 0.09 -10.65 16 11 N -0.60 -9.35 2.91 -171.48 -0.50 -9.85 16 12 C 0.08 0.92 8.87 59.84 0.53 1.45 16 13 C 0.12 2.36 3.45 -65.78 -0.23 2.13 16 14 H 0.11 2.28 7.02 -51.93 -0.36 1.91 16 15 C -0.15 -2.97 6.51 -24.89 -0.16 -3.13 16 16 C 0.18 4.44 5.37 -3.06 -0.02 4.43 16 17 N -0.60 -15.73 3.39 -170.07 -0.58 -16.30 16 18 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -27.35 10.31 55.49 0.57 -26.78 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 C 0.13 2.83 6.79 -2.53 -0.02 2.81 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.08 0.96 6.41 -51.93 -0.33 0.62 16 38 H 0.07 0.60 6.00 -51.93 -0.31 0.29 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.06 6.40 -51.93 -0.33 0.73 16 41 H 0.05 1.34 7.38 -51.92 -0.38 0.96 16 42 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.02 0.45 7.00 -51.93 -0.36 0.08 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -32.36 353.96 -9.27 -41.63 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.80 Total: -1.41 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.36 Total: 0.73 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.50 Total: -52.94 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.36 -9.27 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033399493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.478 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds